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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178401 4v9g:AK (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178402 4v9g:AL (7.78) BS01 BCL ? GO:0009772 ... P0C0Y8 24131108
    178403 4v9g:AL (7.78) BS02 BCL ? GO:0009772 ... P0C0Y8 24131108
    178404 4v9g:AL (7.78) BS03 BPH ? GO:0009772 ... P0C0Y8 24131108
    178405 4v9g:AL (7.78) BS04 U10 ? GO:0009772 ... P0C0Y8 24131108
    178406 4v9g:AL (7.78) BS05 BCL ? GO:0009772 ... P0C0Y8 24131108
    178407 4v9g:AL (7.78) BS06 BPH ? GO:0009772 ... P0C0Y8 24131108
    178408 4v9g:AL (7.78) BS07 FE2 ? GO:0009772 ... P0C0Y8 24131108
    178409 4v9g:AL (7.78) BS08 U10 ? GO:0009772 ... P0C0Y8 24131108
    178410 4v9g:AM (7.78) BS01 BCL ? GO:0009772 ... P0C0Y9 24131108
    178411 4v9g:AM (7.78) BS02 BPH ? GO:0009772 ... P0C0Y9 24131108
    178412 4v9g:AM (7.78) BS03 BCL ? GO:0009772 ... P0C0Y9 24131108
    178413 4v9g:AM (7.78) BS04 BCL ? GO:0009772 ... P0C0Y9 24131108
    178414 4v9g:AM (7.78) BS05 BPH ? GO:0009772 ... P0C0Y9 24131108
    178415 4v9g:AM (7.78) BS06 FE2 ? GO:0009772 ... P0C0Y9 24131108
    178416 4v9g:AM (7.78) BS07 U10 ? GO:0009772 ... P0C0Y9 24131108
    178417 4v9g:AM (7.78) BS08 SPO ? GO:0009772 ... P0C0Y9 24131108
    178418 4v9g:AN (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178419 4v9g:AN (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178420 4v9g:AO (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178421 4v9g:AO (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178422 4v9g:AP (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178423 4v9g:AP (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178424 4v9g:AQ (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178425 4v9g:AQ (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178426 4v9g:AS (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178427 4v9g:AT (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178428 4v9g:AT (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178429 4v9g:AT (7.78) BS03 BCL ? GO:0005886 ... P0C0X9 24131108
    178430 4v9g:AU (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178431 4v9g:AU (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178432 4v9g:AV (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178433 4v9g:AV (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178434 4v9g:AW (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178435 4v9g:AX (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178436 4v9g:AY (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178437 4v9g:AZ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178438 4v9g:AZ (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178439 4v9g:B1 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178440 4v9g:B1 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178441 4v9g:B2 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178442 4v9g:B3 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178443 4v9g:B4 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178444 4v9g:B4 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178445 4v9g:B5 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178446 4v9g:B6 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178447 4v9g:B6 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178448 4v9g:B7 (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178449 4v9g:B7 (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178450 4v9g:B8 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178451 4v9g:B8 (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178452 4v9g:B9 (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178453 4v9g:BD (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178454 4v9g:BD (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178455 4v9g:BE (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178456 4v9g:BF (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178457 4v9g:BF (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178458 4v9g:BG (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178459 4v9g:BI (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178460 4v9g:BI (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178461 4v9g:BJ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178462 4v9g:BK (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178463 4v9g:BK (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178464 4v9g:BL (7.78) BS01 BCL ? GO:0009772 ... P0C0Y8 24131108
    178465 4v9g:BL (7.78) BS02 BCL ? GO:0009772 ... P0C0Y8 24131108
    178466 4v9g:BL (7.78) BS03 BCL ? GO:0009772 ... P0C0Y8 24131108
    178467 4v9g:BL (7.78) BS04 BPH ? GO:0009772 ... P0C0Y8 24131108
    178468 4v9g:BL (7.78) BS05 FE2 ? GO:0009772 ... P0C0Y8 24131108
    178469 4v9g:BL (7.78) BS06 U10 ? GO:0009772 ... P0C0Y8 24131108
    178470 4v9g:BL (7.78) BS07 BPH ? GO:0009772 ... P0C0Y8 24131108
    178471 4v9g:BM (7.78) BS01 BCL ? GO:0009772 ... P0C0Y9 24131108
    178472 4v9g:BM (7.78) BS02 BCL ? GO:0009772 ... P0C0Y9 24131108
    178473 4v9g:BM (7.78) BS03 BPH ? GO:0009772 ... P0C0Y9 24131108
    178474 4v9g:BM (7.78) BS04 BCL ? GO:0009772 ... P0C0Y9 24131108
    178475 4v9g:BM (7.78) BS05 BPH ? GO:0009772 ... P0C0Y9 24131108
    178476 4v9g:BN (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178477 4v9g:BN (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178478 4v9g:BO (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178479 4v9g:BO (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178480 4v9g:BP (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178481 4v9g:BP (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178482 4v9g:BQ (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178483 4v9g:BQ (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178484 4v9g:BS (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178485 4v9g:BT (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178486 4v9g:BT (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178487 4v9g:BU (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178488 4v9g:BU (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178489 4v9g:BV (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178490 4v9g:BV (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178491 4v9g:BW (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178492 4v9g:BW (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178493 4v9g:BX (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178494 4v9g:BX (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178495 4v9g:BY (7.78) BS01 BCL ? GO:0005886 ... Q3J1A3 24131108
    178496 4v9g:BY (7.78) BS02 BCL ? GO:0005886 ... Q3J1A3 24131108
    178497 4v9g:BZ (7.78) BS01 BCL ? GO:0005886 ... P0C0X9 24131108
    178498 4v9g:BZ (7.78) BS02 BCL ? GO:0005886 ... P0C0X9 24131108
    178499 4v9h:AB (2.857) BS01 rna ? GO:0003735 ... P80371 23812720
    178500 4v9h:AD (2.857) BS01 rna ? GO:0003723 ... P80373 23812720
    178501 4v9h:AE (2.857) BS01 rna ? GO:0003723 ... Q5SHQ5 23812720
    178502 4v9h:AF (2.857) BS01 rna ? GO:0003735 ... Q5SLP8 23812720
    178503 4v9h:AG (2.857) BS01 rna ? GO:0000028 ... P17291 23812720
    178504 4v9h:AG (2.857) BS02 rna ? GO:0000028 ... P17291 23812720
    178505 4v9h:AH (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    178506 4v9h:AI (2.857) BS01 rna ? GO:0000049 ... P80374 23812720
    178507 4v9h:AI (2.857) BS02 rna ? GO:0000049 ... P80374 23812720
    178508 4v9h:AJ (2.857) BS01 rna ? GO:0000049 ... Q5SHN7 23812720
    178509 4v9h:AK (2.857) BS01 rna ? GO:0003735 ... P80376 23812720
    178510 4v9h:AL (2.857) BS01 rna ? GO:0000049 ... Q5SHN3 23812720
    178511 4v9h:AM (2.857) BS01 rna ? GO:0000049 ... P80377 23812720
    178512 4v9h:AN (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    178513 4v9h:AO (2.857) BS01 rna ? GO:0003735 ... Q5SJ76 23812720
    178514 4v9h:AO (2.857) BS02 rna ? GO:0003735 ... Q5SJ76 23812720
    178515 4v9h:AP (2.857) BS01 rna ? GO:0003735 ... Q5SJH3 23812720
    178516 4v9h:AQ (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    178517 4v9h:AR (2.857) BS01 rna ? GO:0003735 ... Q5SLQ0 23812720
    178518 4v9h:AS (2.857) BS01 rna ? GO:0003723 ... Q5SHP2 23812720
    178519 4v9h:AT (2.857) BS01 rna ? GO:0003723 ... P80380 23812720
    178520 4v9h:AY (2.857) BS01 rna ? GO:0003746 ... Q5SHN5 23812720
    178521 4v9h:AY (2.857) BS02 rna ? GO:0003746 ... Q5SHN5 23812720
    178522 4v9h:AY (2.857) BS03 MG ? GO:0003746 ... Q5SHN5 23812720
    178523 4v9h:B0 (2.857) BS01 rna ? GO:0003735 ... P60493 23812720
    178524 4v9h:B0 (2.857) BS02 rna ? GO:0003735 ... P60493 23812720
    178525 4v9h:B1 (2.857) BS01 rna ? GO:0003735 ... P60494 23812720
    178526 4v9h:B2 (2.857) BS01 rna ? GO:0003735 ... Q5SHP6 23812720
    178527 4v9h:B3 (2.857) BS01 rna ? GO:0003735 ... Q5SHQ6 23812720
    178528 4v9h:B3 (2.857) BS02 rna ? GO:0003735 ... Q5SHQ6 23812720
    178529 4v9h:B5 (2.857) BS01 rna ? GO:0003735 ... P80339 23812720
    178530 4v9h:B6 (2.857) BS01 rna ? GO:0000049 ... P35871 23812720
    178531 4v9h:B7 (2.857) BS01 rna ? GO:0003735 ... P80340 23812720
    178532 4v9h:B8 (2.857) BS01 rna ? GO:0003735 ... Q5SKU1 23812720
    178533 4v9h:B8 (2.857) BS02 MG ? GO:0003735 ... Q5SKU1 23812720
    178534 4v9h:B9 (2.857) BS01 rna ? GO:0003735 ... Q5SHR2 23812720
    178535 4v9h:BC (2.857) BS01 rna ? GO:0000049 ... Q5SLP7 23812720
    178536 4v9h:BC (2.857) BS02 rna ? GO:0000049 ... Q5SLP7 23812720
    178537 4v9h:BD (2.857) BS01 rna ? GO:0002181 ... P60405 23812720
    178538 4v9h:BD (2.857) BS02 rna ? GO:0002181 ... P60405 23812720
    178539 4v9h:BE (2.857) BS01 rna ? GO:0003735 ... Q5SHN8 23812720
    178540 4v9h:BF (2.857) BS01 rna ? GO:0003735 ... Q5SHN9 23812720
    178541 4v9h:BF (2.857) BS02 MG ? GO:0003735 ... Q5SHN9 23812720
    178542 4v9h:BG (2.857) BS01 rna ? GO:0000049 ... Q5SHQ0 23812720
    178543 4v9h:BG (2.857) BS02 rna ? GO:0000049 ... Q5SHQ0 23812720
    178544 4v9h:BH (2.857) BS01 rna N/A GO:0003735 ... N/A 23812720
    178545 4v9h:BK (2.857) BS01 rna ? GO:0003735 ... Q5SLP6 23812720
    178546 4v9h:BN (2.857) BS01 rna ? GO:0003729 ... P60488 23812720
    178547 4v9h:BO (2.857) BS01 rna ? GO:0003735 ... Q5SHP8 23812720
    178548 4v9h:BO (2.857) BS02 rna ? GO:0003735 ... Q5SHP8 23812720
    178549 4v9h:BP (2.857) BS01 rna ? GO:0003735 ... Q5SHQ7 23812720
    178550 4v9h:BQ (2.857) BS01 rna ? GO:0000049 ... P60489 23812720
    178551 4v9h:BQ (2.857) BS02 rna ? GO:0000049 ... P60489 23812720
    178552 4v9h:BR (2.857) BS01 rna ? GO:0003735 ... Q9Z9H5 23812720
    178553 4v9h:BS (2.857) BS01 rna ? GO:0003735 ... Q5SHQ4 23812720
    178554 4v9h:BS (2.857) BS02 rna ? GO:0003735 ... Q5SHQ4 23812720
    178555 4v9h:BT (2.857) BS01 rna ? GO:0003735 ... P60490 23812720
    178556 4v9h:BT (2.857) BS02 rna ? GO:0003735 ... P60490 23812720
    178557 4v9h:BU (2.857) BS01 rna ? GO:0000027 ... P60491 23812720
    178558 4v9h:BV (2.857) BS01 rna ? GO:0003723 ... P60492 23812720
    178559 4v9h:BW (2.857) BS01 rna ? GO:0003735 ... Q5SHP3 23812720
    178560 4v9h:BX (2.857) BS01 rna ? GO:0000027 ... Q5SHP0 23812720
    178561 4v9h:BY (2.857) BS01 rna ? GO:0003723 ... Q5SHP9 23812720
    178562 4v9h:BZ (2.857) BS01 rna ? GO:0003723 ... Q5SHZ1 23812720
    178563 4v9h:BZ (2.857) BS02 rna ? GO:0003723 ... Q5SHZ1 23812720
    178564 4v9i:AB (3.3) BS01 rna ? GO:0003735 ... P80371 23812587
    178565 4v9i:AD (3.3) BS01 rna ? GO:0003723 ... P80373 23812587
    178566 4v9i:AE (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 23812587
    178567 4v9i:AF (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 23812587
    178568 4v9i:AG (3.3) BS01 rna ? GO:0000028 ... P17291 23812587
    178569 4v9i:AG (3.3) BS02 rna ? GO:0000028 ... P17291 23812587
    178570 4v9i:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178571 4v9i:AI (3.3) BS01 rna ? GO:0000049 ... P80374 23812587
    178572 4v9i:AJ (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 23812587
    178573 4v9i:AK (3.3) BS01 rna ? GO:0003735 ... P80376 23812587
    178574 4v9i:AL (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 23812587
    178575 4v9i:AM (3.3) BS01 rna ? GO:0000049 ... P80377 23812587
    178576 4v9i:AM (3.3) BS02 rna ? GO:0000049 ... P80377 23812587
    178577 4v9i:AM (3.3) BS03 rna ? GO:0000049 ... P80377 23812587
    178578 4v9i:AN (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178579 4v9i:AO (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 23812587
    178580 4v9i:AO (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 23812587
    178581 4v9i:AP (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 23812587
    178582 4v9i:AQ (3.3) BS01 rna N/A GO:0003735 ... N/A 23812587
    178583 4v9i:AR (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 23812587
    178584 4v9i:AS (3.3) BS01 rna ? GO:0003723 ... Q5SHP2 23812587
    178585 4v9i:AT (3.3) BS01 rna ? GO:0003723 ... P80380 23812587
    178586 4v9i:B0 (3.3) BS01 rna ? GO:0003735 ... P60493 23812587
    178587 4v9i:B0 (3.3) BS02 rna ? GO:0003735 ... P60493 23812587
    178588 4v9i:B0 (3.3) BS03 rna ? GO:0003735 ... P60493 23812587
    178589 4v9i:B1 (3.3) BS01 rna ? GO:0003735 ... P60494 23812587
    178590 4v9i:B2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 23812587
    178591 4v9i:B3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 23812587
    178592 4v9i:B3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 23812587
    178593 4v9i:B5 (3.3) BS01 rna ? GO:0003735 ... P80339 23812587
    178594 4v9i:B6 (3.3) BS01 rna ? GO:0003735 ... P35871 23812587
    178595 4v9i:B7 (3.3) BS01 rna ? GO:0003735 ... P80340 23812587
    178596 4v9i:B8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 23812587
    178597 4v9i:B9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 23812587
    178598 4v9i:BD (3.3) BS01 rna ? GO:0002181 ... P60405 23812587
    178599 4v9i:BE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 23812587
    178600 4v9i:BF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 23812587
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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