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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    178001 4v9b:CR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 23431179
    178002 4v9b:CR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 23431179
    178003 4v9b:CS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 23431179
    178004 4v9b:CT (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    178005 4v9b:CU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 23431179
    178006 4v9b:CV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 23431179
    178007 4v9b:CW (3.1) BS01 rna ? GO:0003723 ... P80380 23431179
    178008 4v9b:D0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 23431179
    178009 4v9b:D1 (3.1) BS01 rna ? GO:0000027 ... P60491 23431179
    178010 4v9b:D2 (3.1) BS01 rna ? GO:0003723 ... P60492 23431179
    178011 4v9b:D3 (3.1) BS01 rna ? GO:0003735 ... P60493 23431179
    178012 4v9b:D3 (3.1) BS02 rna ? GO:0003735 ... P60493 23431179
    178013 4v9b:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 23431179
    178014 4v9b:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 23431179
    178015 4v9b:D5 (3.1) BS02 MG ? GO:0003735 ... P80339 23431179
    178016 4v9b:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 23431179
    178017 4v9b:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 23431179
    178018 4v9b:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 23431179
    178019 4v9b:DD (3.1) BS01 rna ? GO:0002181 ... P60405 23431179
    178020 4v9b:DD (3.1) BS02 rna ? GO:0002181 ... P60405 23431179
    178021 4v9b:DD (3.1) BS03 MG ? GO:0002181 ... P60405 23431179
    178022 4v9b:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 23431179
    178023 4v9b:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 23431179
    178024 4v9b:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 23431179
    178025 4v9b:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 23431179
    178026 4v9b:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 23431179
    178027 4v9b:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    178028 4v9b:DK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 23431179
    178029 4v9b:DK (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 23431179
    178030 4v9b:DM (3.1) BS01 rna ? GO:0003729 ... P60488 23431179
    178031 4v9b:DN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 23431179
    178032 4v9b:DN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 23431179
    178033 4v9b:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 23431179
    178034 4v9b:DP (3.1) BS01 rna ? GO:0000049 ... P60489 23431179
    178035 4v9b:DP (3.1) BS02 rna ? GO:0000049 ... P60489 23431179
    178036 4v9b:DQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 23431179
    178037 4v9b:DQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 23431179
    178038 4v9b:DR (3.1) BS01 rna ? GO:0003735 ... P60490 23431179
    178039 4v9b:DR (3.1) BS02 rna ? GO:0003735 ... P60490 23431179
    178040 4v9b:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 23431179
    178041 4v9b:DT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 23431179
    178042 4v9b:DU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 23431179
    178043 4v9b:DV (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 23431179
    178044 4v9b:DV (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 23431179
    178045 4v9b:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 23431179
    178046 4v9b:DX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 23431179
    178047 4v9b:DX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 23431179
    178048 4v9b:DZ (3.1) BS01 rna ? GO:0003735 ... P60494 23431179
    178049 4v9c:AB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 22902368
    178050 4v9c:AB (3.3) BS02 rna ? GO:0000028 ... P0A7V0 22902368
    178051 4v9c:AC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 22902368
    178052 4v9c:AC (3.3) BS02 rna ? GO:0000028 ... P0A7V3 22902368
    178053 4v9c:AD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 22902368
    178054 4v9c:AE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 22902368
    178055 4v9c:AF (3.3) BS01 rna ? GO:0002181 ... P02358 22902368
    178056 4v9c:AG (3.3) BS01 rna ? GO:0000028 ... P02359 22902368
    178057 4v9c:AH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 22902368
    178058 4v9c:AI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 22902368
    178059 4v9c:AI (3.3) BS02 rna ? GO:0000049 ... P0A7X3 22902368
    178060 4v9c:AJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 22902368
    178061 4v9c:AK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 22902368
    178062 4v9c:AL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 22902368
    178063 4v9c:AM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 22902368
    178064 4v9c:AN (3.3) BS01 rna ? GO:0000028 ... P0AG59 22902368
    178065 4v9c:AO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 22902368
    178066 4v9c:AP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 22902368
    178067 4v9c:AQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 22902368
    178068 4v9c:AR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 22902368
    178069 4v9c:AS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 22902368
    178070 4v9c:AT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 22902368
    178071 4v9c:AU (3.3) BS01 rna ? GO:0000028 ... P68679 22902368
    178072 4v9c:AU (3.3) BS02 rna ? GO:0000028 ... P68679 22902368
    178073 4v9c:B0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 22902368
    178074 4v9c:B1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 22902368
    178075 4v9c:B2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 22902368
    178076 4v9c:B3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 22902368
    178077 4v9c:B4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 22902368
    178078 4v9c:B4 (3.3) BS02 ZN ? GO:0002181 ... P0A7Q6 22902368
    178079 4v9c:BC (3.3) BS01 rna ? GO:0000027 ... P60422 22902368
    178080 4v9c:BD (3.3) BS01 rna ? GO:0000027 ... P60438 22902368
    178081 4v9c:BE (3.3) BS01 rna ? GO:0001070 ... P60723 22902368
    178082 4v9c:BF (3.3) BS01 rna ? GO:0000027 ... P62399 22902368
    178083 4v9c:BF (3.3) BS02 rna ? GO:0000027 ... P62399 22902368
    178084 4v9c:BF (3.3) BS03 rna ? GO:0000027 ... P62399 22902368
    178085 4v9c:BG (3.3) BS01 rna ? GO:0000027 ... P0AG55 22902368
    178086 4v9c:BH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 22902368
    178087 4v9c:BI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 22902368
    178088 4v9c:BJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 22902368
    178089 4v9c:BK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 22902368
    178090 4v9c:BK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 22902368
    178091 4v9c:BL (3.3) BS01 rna ? GO:0002181 ... P02413 22902368
    178092 4v9c:BM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 22902368
    178093 4v9c:BM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 22902368
    178094 4v9c:BN (3.3) BS01 rna ? GO:0000027 ... P0AG44 22902368
    178095 4v9c:BO (3.3) BS01 rna ? GO:0002181 ... P0C018 22902368
    178096 4v9c:BO (3.3) BS02 rna ? GO:0002181 ... P0C018 22902368
    178097 4v9c:BP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 22902368
    178098 4v9c:BP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 22902368
    178099 4v9c:BQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 22902368
    178100 4v9c:BR (3.3) BS01 rna ? GO:0002181 ... P0AG48 22902368
    178101 4v9c:BS (3.3) BS01 rna ? GO:0002181 ... P61175 22902368
    178102 4v9c:BT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 22902368
    178103 4v9c:BU (3.3) BS01 rna ? GO:0000027 ... P60624 22902368
    178104 4v9c:BV (3.3) BS01 rna ? GO:0000027 ... P68919 22902368
    178105 4v9c:BV (3.3) BS02 rna ? GO:0000027 ... P68919 22902368
    178106 4v9c:BW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 22902368
    178107 4v9c:BW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 22902368
    178108 4v9c:BX (3.3) BS01 rna ? GO:0000027 ... P0A7M2 22902368
    178109 4v9c:BY (3.3) BS01 rna ? GO:0000027 ... P0A7M6 22902368
    178110 4v9c:BZ (3.3) BS01 rna ? GO:0000027 ... P0AG51 22902368
    178111 4v9c:BZ (3.3) BS02 rna ? GO:0000027 ... P0AG51 22902368
    178112 4v9c:CB (3.3) BS01 rna ? GO:0000028 ... P0A7V0 22902368
    178113 4v9c:CC (3.3) BS01 rna ? GO:0000028 ... P0A7V3 22902368
    178114 4v9c:CD (3.3) BS01 rna ? GO:0000028 ... P0A7V8 22902368
    178115 4v9c:CE (3.3) BS01 rna ? GO:0000028 ... P0A7W1 22902368
    178116 4v9c:CF (3.3) BS01 rna ? GO:0002181 ... P02358 22902368
    178117 4v9c:CG (3.3) BS01 rna ? GO:0000028 ... P02359 22902368
    178118 4v9c:CH (3.3) BS01 rna ? GO:0000028 ... P0A7W7 22902368
    178119 4v9c:CI (3.3) BS01 rna ? GO:0000049 ... P0A7X3 22902368
    178120 4v9c:CJ (3.3) BS01 rna ? GO:0000049 ... P0A7R5 22902368
    178121 4v9c:CK (3.3) BS01 rna ? GO:0002181 ... P0A7R9 22902368
    178122 4v9c:CK (3.3) BS02 rna ? GO:0002181 ... P0A7R9 22902368
    178123 4v9c:CK (3.3) BS03 rna ? GO:0002181 ... P0A7R9 22902368
    178124 4v9c:CK (3.3) BS04 rna ? GO:0002181 ... P0A7R9 22902368
    178125 4v9c:CL (3.3) BS01 rna ? GO:0000049 ... P0A7S3 22902368
    178126 4v9c:CM (3.3) BS01 rna ? GO:0000049 ... P0A7S9 22902368
    178127 4v9c:CN (3.3) BS01 rna ? GO:0000028 ... P0AG59 22902368
    178128 4v9c:CO (3.3) BS01 rna ? GO:0000028 ... P0ADZ4 22902368
    178129 4v9c:CP (3.3) BS01 rna ? GO:0000028 ... P0A7T3 22902368
    178130 4v9c:CQ (3.3) BS01 rna ? GO:0000028 ... P0AG63 22902368
    178131 4v9c:CR (3.3) BS01 rna ? GO:0002181 ... P0A7T7 22902368
    178132 4v9c:CS (3.3) BS01 rna ? GO:0000028 ... P0A7U3 22902368
    178133 4v9c:CT (3.3) BS01 rna ? GO:0000028 ... P0A7U7 22902368
    178134 4v9c:CU (3.3) BS01 rna ? GO:0000028 ... P68679 22902368
    178135 4v9c:CU (3.3) BS02 rna ? GO:0000028 ... P68679 22902368
    178136 4v9c:CY (3.3) BS01 rna ? GO:0002184 ... P0A805 22902368
    178137 4v9c:D0 (3.3) BS01 rna ? GO:0000027 ... P0A7N4 22902368
    178138 4v9c:D1 (3.3) BS01 rna ? GO:0000027 ... P0A7N9 22902368
    178139 4v9c:D1 (3.3) BS02 rna ? GO:0000027 ... P0A7N9 22902368
    178140 4v9c:D2 (3.3) BS01 rna ? GO:0002181 ... P0A7P5 22902368
    178141 4v9c:D3 (3.3) BS01 rna ? GO:0002181 ... P0A7Q1 22902368
    178142 4v9c:D4 (3.3) BS01 rna ? GO:0002181 ... P0A7Q6 22902368
    178143 4v9c:DC (3.3) BS01 rna ? GO:0000027 ... P60422 22902368
    178144 4v9c:DD (3.3) BS01 rna ? GO:0000027 ... P60438 22902368
    178145 4v9c:DE (3.3) BS01 rna ? GO:0001070 ... P60723 22902368
    178146 4v9c:DF (3.3) BS01 rna ? GO:0000027 ... P62399 22902368
    178147 4v9c:DF (3.3) BS02 rna ? GO:0000027 ... P62399 22902368
    178148 4v9c:DG (3.3) BS01 rna ? GO:0000027 ... P0AG55 22902368
    178149 4v9c:DH (3.3) BS01 rna ? GO:0002181 ... P0A7R1 22902368
    178150 4v9c:DH (3.3) BS02 rna ? GO:0002181 ... P0A7R1 22902368
    178151 4v9c:DI (3.3) BS01 rna ? GO:0000027 ... P0A7J7 22902368
    178152 4v9c:DJ (3.3) BS01 rna ? GO:0002181 ... P0AA10 22902368
    178153 4v9c:DK (3.3) BS01 rna ? GO:0002181 ... P0ADY3 22902368
    178154 4v9c:DK (3.3) BS02 rna ? GO:0002181 ... P0ADY3 22902368
    178155 4v9c:DL (3.3) BS01 rna ? GO:0002181 ... P02413 22902368
    178156 4v9c:DM (3.3) BS01 rna ? GO:0000027 ... P0ADY7 22902368
    178157 4v9c:DM (3.3) BS02 rna ? GO:0000027 ... P0ADY7 22902368
    178158 4v9c:DN (3.3) BS01 rna ? GO:0000027 ... P0AG44 22902368
    178159 4v9c:DO (3.3) BS01 rna ? GO:0002181 ... P0C018 22902368
    178160 4v9c:DO (3.3) BS02 rna ? GO:0002181 ... P0C018 22902368
    178161 4v9c:DP (3.3) BS01 rna ? GO:0000027 ... P0A7K6 22902368
    178162 4v9c:DP (3.3) BS02 rna ? GO:0000027 ... P0A7K6 22902368
    178163 4v9c:DQ (3.3) BS01 rna ? GO:0000027 ... P0A7L3 22902368
    178164 4v9c:DR (3.3) BS01 rna ? GO:0002181 ... P0AG48 22902368
    178165 4v9c:DS (3.3) BS01 rna ? GO:0002181 ... P61175 22902368
    178166 4v9c:DT (3.3) BS01 rna ? GO:0000027 ... P0ADZ0 22902368
    178167 4v9c:DU (3.3) BS01 rna ? GO:0000027 ... P60624 22902368
    178168 4v9c:DV (3.3) BS01 rna ? GO:0000027 ... P68919 22902368
    178169 4v9c:DV (3.3) BS02 rna ? GO:0000027 ... P68919 22902368
    178170 4v9c:DW (3.3) BS01 rna ? GO:0000027 ... P0A7L8 22902368
    178171 4v9c:DW (3.3) BS02 rna ? GO:0000027 ... P0A7L8 22902368
    178172 4v9c:DX (3.3) BS01 rna ? GO:0000027 ... P0A7M2 22902368
    178173 4v9c:DY (3.3) BS01 rna ? GO:0000027 ... P0A7M6 22902368
    178174 4v9c:DZ (3.3) BS01 rna ? GO:0000027 ... P0AG51 22902368
    178175 4v9d:AB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 21596992
    178176 4v9d:AD (3.0) BS01 rna ? GO:0000028 ... P0A7V8 21596992
    178177 4v9d:AE (3.0) BS01 rna ? GO:0000028 ... P0A7W1 21596992
    178178 4v9d:AF (3.0) BS01 rna ? GO:0003735 ... P02358 21596992
    178179 4v9d:AG (3.0) BS01 rna ? GO:0003723 ... P02359 21596992
    178180 4v9d:AG (3.0) BS02 rna ? GO:0003723 ... P02359 21596992
    178181 4v9d:AG (3.0) BS03 rna ? GO:0003723 ... P02359 21596992
    178182 4v9d:AH (3.0) BS01 rna ? GO:0000028 ... P0A7W7 21596992
    178183 4v9d:AI (3.0) BS01 rna ? GO:0000049 ... P0A7X3 21596992
    178184 4v9d:AI (3.0) BS02 rna ? GO:0000049 ... P0A7X3 21596992
    178185 4v9d:AJ (3.0) BS01 rna ? GO:0000049 ... P0A7R5 21596992
    178186 4v9d:AK (3.0) BS01 rna ? GO:0002181 ... P0A7R9 21596992
    178187 4v9d:AK (3.0) BS02 rna ? GO:0002181 ... P0A7R9 21596992
    178188 4v9d:AL (3.0) BS01 rna ? GO:0000049 ... P0A7S3 21596992
    178189 4v9d:AM (3.0) BS01 rna ? GO:0000049 ... P0A7S9 21596992
    178190 4v9d:AN (3.0) BS01 rna ? GO:0000028 ... P0AG59 21596992
    178191 4v9d:AO (3.0) BS01 rna ? GO:0000028 ... P0ADZ4 21596992
    178192 4v9d:AO (3.0) BS02 rna ? GO:0000028 ... P0ADZ4 21596992
    178193 4v9d:AP (3.0) BS01 rna ? GO:0000028 ... P0A7T3 21596992
    178194 4v9d:AQ (3.0) BS01 rna ? GO:0000028 ... P0AG63 21596992
    178195 4v9d:AR (3.0) BS01 rna ? GO:0003735 ... P0A7T7 21596992
    178196 4v9d:AS (3.0) BS01 rna ? GO:0003723 ... P0A7U3 21596992
    178197 4v9d:AT (3.0) BS01 rna ? GO:0000028 ... P0A7U7 21596992
    178198 4v9d:AU (3.0) BS01 rna ? GO:0003735 ... P68679 21596992
    178199 4v9d:AY (3.0) BS01 rna ? GO:0002184 ... P0A805 21596992
    178200 4v9d:BB (3.0) BS01 rna ? GO:0000028 ... P0A7V0 21596992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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