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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177801 4v9a:AP (3.2999) BS01 rna ? GO:0000049 ... P80377 23431179
    177802 4v9a:AQ (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177803 4v9a:AQ (3.2999) BS02 ZN N/A GO:0003735 ... N/A 23431179
    177804 4v9a:AR (3.2999) BS01 rna ? GO:0003735 ... Q5SJ76 23431179
    177805 4v9a:AR (3.2999) BS02 rna ? GO:0003735 ... Q5SJ76 23431179
    177806 4v9a:AS (3.2999) BS01 rna ? GO:0003735 ... Q5SJH3 23431179
    177807 4v9a:AT (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177808 4v9a:AU (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ0 23431179
    177809 4v9a:AV (3.2999) BS01 rna ? GO:0000028 ... Q5SHP2 23431179
    177810 4v9a:AW (3.2999) BS01 rna ? GO:0003723 ... P80380 23431179
    177811 4v9a:B0 (3.2999) BS01 rna ? GO:0003735 ... Q9Z9H5 23431179
    177812 4v9a:B1 (3.2999) BS01 rna ? GO:0000027 ... P60491 23431179
    177813 4v9a:B2 (3.2999) BS01 rna ? GO:0003723 ... P60492 23431179
    177814 4v9a:B3 (3.2999) BS01 rna ? GO:0003735 ... P60493 23431179
    177815 4v9a:B3 (3.2999) BS02 rna ? GO:0003735 ... P60493 23431179
    177816 4v9a:B4 (3.2999) BS01 rna ? GO:0003735 ... Q5SJE1 23431179
    177817 4v9a:B4 (3.2999) BS02 rna ? GO:0003735 ... Q5SJE1 23431179
    177818 4v9a:B5 (3.2999) BS01 rna ? GO:0003735 ... P80339 23431179
    177819 4v9a:B6 (3.2999) BS01 rna ? GO:0000049 ... P35871 23431179
    177820 4v9a:B7 (3.2999) BS01 rna ? GO:0003735 ... P80340 23431179
    177821 4v9a:B8 (3.2999) BS01 rna ? GO:0003735 ... Q5SKU1 23431179
    177822 4v9a:BD (3.2999) BS01 rna ? GO:0002181 ... P60405 23431179
    177823 4v9a:BD (3.2999) BS02 MG ? GO:0002181 ... P60405 23431179
    177824 4v9a:BE (3.2999) BS01 rna ? GO:0003735 ... Q5SHN8 23431179
    177825 4v9a:BE (3.2999) BS02 MG ? GO:0003735 ... Q5SHN8 23431179
    177826 4v9a:BF (3.2999) BS01 rna ? GO:0003735 ... Q5SHN9 23431179
    177827 4v9a:BF (3.2999) BS02 MG ? GO:0003735 ... Q5SHN9 23431179
    177828 4v9a:BF (3.2999) BS03 MG ? GO:0003735 ... Q5SHN9 23431179
    177829 4v9a:BG (3.2999) BS01 rna ? GO:0000049 ... Q5SHQ0 23431179
    177830 4v9a:BG (3.2999) BS02 rna ? GO:0000049 ... Q5SHQ0 23431179
    177831 4v9a:BG (3.2999) BS03 rna ? GO:0000049 ... Q5SHQ0 23431179
    177832 4v9a:BH (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177833 4v9a:BK (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ1 23431179
    177834 4v9a:BM (3.2999) BS01 rna ? GO:0003729 ... P60488 23431179
    177835 4v9a:BN (3.2999) BS01 rna ? GO:0003735 ... Q5SHP8 23431179
    177836 4v9a:BN (3.2999) BS02 rna ? GO:0003735 ... Q5SHP8 23431179
    177837 4v9a:BO (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ7 23431179
    177838 4v9a:BP (3.2999) BS01 rna ? GO:0000049 ... P60489 23431179
    177839 4v9a:BP (3.2999) BS02 rna ? GO:0000049 ... P60489 23431179
    177840 4v9a:BQ (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ4 23431179
    177841 4v9a:BQ (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ4 23431179
    177842 4v9a:BR (3.2999) BS01 rna ? GO:0003735 ... P60490 23431179
    177843 4v9a:BR (3.2999) BS02 rna ? GO:0003735 ... P60490 23431179
    177844 4v9a:BS (3.2999) BS01 rna ? GO:0003735 ... Q5SHP3 23431179
    177845 4v9a:BT (3.2999) BS01 rna ? GO:0000027 ... Q5SHP0 23431179
    177846 4v9a:BU (3.2999) BS01 rna ? GO:0003723 ... Q5SHP9 23431179
    177847 4v9a:BV (3.2999) BS01 rna ? GO:0003723 ... Q5SHZ1 23431179
    177848 4v9a:BV (3.2999) BS02 rna ? GO:0003723 ... Q5SHZ1 23431179
    177849 4v9a:BW (3.2999) BS01 rna ? GO:0003735 ... Q5SHP6 23431179
    177850 4v9a:BX (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ6 23431179
    177851 4v9a:BX (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ6 23431179
    177852 4v9a:BZ (3.2999) BS01 rna ? GO:0003735 ... P60494 23431179
    177853 4v9a:CE (3.2999) BS01 rna ? GO:0003735 ... P80371 23431179
    177854 4v9a:CF (3.2999) BS01 rna ? GO:0003676 ... P80372 23431179
    177855 4v9a:CG (3.2999) BS01 rna ? GO:0003723 ... P80373 23431179
    177856 4v9a:CG (3.2999) BS02 MG ? GO:0003723 ... P80373 23431179
    177857 4v9a:CG (3.2999) BS03 ZN ? GO:0003723 ... P80373 23431179
    177858 4v9a:CH (3.2999) BS01 rna ? GO:0003723 ... Q5SHQ5 23431179
    177859 4v9a:CI (3.2999) BS01 rna ? GO:0003735 ... Q5SLP8 23431179
    177860 4v9a:CJ (3.2999) BS01 rna ? GO:0000028 ... P17291 23431179
    177861 4v9a:CK (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177862 4v9a:CL (3.2999) BS01 rna ? GO:0000049 ... P80374 23431179
    177863 4v9a:CL (3.2999) BS02 rna ? GO:0000049 ... P80374 23431179
    177864 4v9a:CM (3.2999) BS01 rna ? GO:0000049 ... Q5SHN7 23431179
    177865 4v9a:CN (3.2999) BS01 rna ? GO:0003735 ... P80376 23431179
    177866 4v9a:CN (3.2999) BS02 MG ? GO:0003735 ... P80376 23431179
    177867 4v9a:CO (3.2999) BS01 rna ? GO:0000049 ... Q5SHN3 23431179
    177868 4v9a:CP (3.2999) BS01 rna ? GO:0000049 ... P80377 23431179
    177869 4v9a:CQ (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177870 4v9a:CQ (3.2999) BS02 ZN N/A GO:0003735 ... N/A 23431179
    177871 4v9a:CR (3.2999) BS01 rna ? GO:0003735 ... Q5SJ76 23431179
    177872 4v9a:CR (3.2999) BS02 rna ? GO:0003735 ... Q5SJ76 23431179
    177873 4v9a:CS (3.2999) BS01 rna ? GO:0003735 ... Q5SJH3 23431179
    177874 4v9a:CT (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177875 4v9a:CU (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ0 23431179
    177876 4v9a:CV (3.2999) BS01 rna ? GO:0000028 ... Q5SHP2 23431179
    177877 4v9a:CW (3.2999) BS01 rna ? GO:0003723 ... P80380 23431179
    177878 4v9a:D0 (3.2999) BS01 rna ? GO:0003735 ... Q9Z9H5 23431179
    177879 4v9a:D1 (3.2999) BS01 rna ? GO:0000027 ... P60491 23431179
    177880 4v9a:D2 (3.2999) BS01 rna ? GO:0003723 ... P60492 23431179
    177881 4v9a:D3 (3.2999) BS01 rna ? GO:0003735 ... P60493 23431179
    177882 4v9a:D4 (3.2999) BS01 rna ? GO:0003735 ... Q5SJE1 23431179
    177883 4v9a:D5 (3.2999) BS01 rna ? GO:0003735 ... P80339 23431179
    177884 4v9a:D6 (3.2999) BS01 rna ? GO:0000049 ... P35871 23431179
    177885 4v9a:D7 (3.2999) BS01 rna ? GO:0003735 ... P80340 23431179
    177886 4v9a:D8 (3.2999) BS01 rna ? GO:0003735 ... Q5SKU1 23431179
    177887 4v9a:DD (3.2999) BS01 rna ? GO:0002181 ... P60405 23431179
    177888 4v9a:DD (3.2999) BS02 rna ? GO:0002181 ... P60405 23431179
    177889 4v9a:DE (3.2999) BS01 rna ? GO:0003735 ... Q5SHN8 23431179
    177890 4v9a:DF (3.2999) BS01 rna ? GO:0003735 ... Q5SHN9 23431179
    177891 4v9a:DG (3.2999) BS01 rna ? GO:0000049 ... Q5SHQ0 23431179
    177892 4v9a:DG (3.2999) BS02 rna ? GO:0000049 ... Q5SHQ0 23431179
    177893 4v9a:DG (3.2999) BS03 rna ? GO:0000049 ... Q5SHQ0 23431179
    177894 4v9a:DH (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177895 4v9a:DK (3.2999) BS01 rna ? GO:0003735 ... Q5SLQ1 23431179
    177896 4v9a:DK (3.2999) BS02 rna ? GO:0003735 ... Q5SLQ1 23431179
    177897 4v9a:DM (3.2999) BS01 rna ? GO:0003729 ... P60488 23431179
    177898 4v9a:DN (3.2999) BS01 rna ? GO:0003735 ... Q5SHP8 23431179
    177899 4v9a:DN (3.2999) BS02 rna ? GO:0003735 ... Q5SHP8 23431179
    177900 4v9a:DO (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ7 23431179
    177901 4v9a:DP (3.2999) BS01 rna ? GO:0000049 ... P60489 23431179
    177902 4v9a:DP (3.2999) BS02 rna ? GO:0000049 ... P60489 23431179
    177903 4v9a:DQ (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ4 23431179
    177904 4v9a:DQ (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ4 23431179
    177905 4v9a:DR (3.2999) BS01 rna ? GO:0003735 ... P60490 23431179
    177906 4v9a:DR (3.2999) BS02 rna ? GO:0003735 ... P60490 23431179
    177907 4v9a:DS (3.2999) BS01 rna ? GO:0003735 ... Q5SHP3 23431179
    177908 4v9a:DT (3.2999) BS01 rna ? GO:0000027 ... Q5SHP0 23431179
    177909 4v9a:DU (3.2999) BS01 rna ? GO:0003723 ... Q5SHP9 23431179
    177910 4v9a:DV (3.2999) BS01 rna ? GO:0003723 ... Q5SHZ1 23431179
    177911 4v9a:DV (3.2999) BS02 rna ? GO:0003723 ... Q5SHZ1 23431179
    177912 4v9a:DW (3.2999) BS01 rna ? GO:0003735 ... Q5SHP6 23431179
    177913 4v9a:DX (3.2999) BS01 rna ? GO:0003735 ... Q5SHQ6 23431179
    177914 4v9a:DX (3.2999) BS02 rna ? GO:0003735 ... Q5SHQ6 23431179
    177915 4v9a:DZ (3.2999) BS01 rna ? GO:0003735 ... P60494 23431179
    177916 4v9b:AE (3.1) BS01 rna ? GO:0003735 ... P80371 23431179
    177917 4v9b:AF (3.1) BS01 rna ? GO:0003676 ... P80372 23431179
    177918 4v9b:AG (3.1) BS01 rna ? GO:0003723 ... P80373 23431179
    177919 4v9b:AG (3.1) BS02 MG ? GO:0003723 ... P80373 23431179
    177920 4v9b:AG (3.1) BS03 ZN ? GO:0003723 ... P80373 23431179
    177921 4v9b:AH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 23431179
    177922 4v9b:AI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 23431179
    177923 4v9b:AJ (3.1) BS01 rna ? GO:0000028 ... P17291 23431179
    177924 4v9b:AJ (3.1) BS02 rna ? GO:0000028 ... P17291 23431179
    177925 4v9b:AK (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    177926 4v9b:AL (3.1) BS01 rna ? GO:0000049 ... P80374 23431179
    177927 4v9b:AL (3.1) BS02 rna ? GO:0000049 ... P80374 23431179
    177928 4v9b:AM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 23431179
    177929 4v9b:AN (3.1) BS01 rna ? GO:0003735 ... P80376 23431179
    177930 4v9b:AN (3.1) BS02 MG ? GO:0003735 ... P80376 23431179
    177931 4v9b:AO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 23431179
    177932 4v9b:AP (3.1) BS01 rna ? GO:0000049 ... P80377 23431179
    177933 4v9b:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    177934 4v9b:AQ (3.1) BS02 ZN N/A GO:0003735 ... N/A 23431179
    177935 4v9b:AR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 23431179
    177936 4v9b:AR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 23431179
    177937 4v9b:AS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 23431179
    177938 4v9b:AT (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    177939 4v9b:AU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 23431179
    177940 4v9b:AV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 23431179
    177941 4v9b:AW (3.1) BS01 rna ? GO:0003723 ... P80380 23431179
    177942 4v9b:B0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 23431179
    177943 4v9b:B1 (3.1) BS01 rna ? GO:0000027 ... P60491 23431179
    177944 4v9b:B2 (3.1) BS01 rna ? GO:0003723 ... P60492 23431179
    177945 4v9b:B3 (3.1) BS01 rna ? GO:0003735 ... P60493 23431179
    177946 4v9b:B3 (3.1) BS02 rna ? GO:0003735 ... P60493 23431179
    177947 4v9b:B4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 23431179
    177948 4v9b:B4 (3.1) BS02 rna ? GO:0003735 ... Q5SJE1 23431179
    177949 4v9b:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 23431179
    177950 4v9b:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 23431179
    177951 4v9b:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 23431179
    177952 4v9b:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 23431179
    177953 4v9b:BD (3.1) BS01 rna ? GO:0002181 ... P60405 23431179
    177954 4v9b:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 23431179
    177955 4v9b:BE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 23431179
    177956 4v9b:BE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 23431179
    177957 4v9b:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 23431179
    177958 4v9b:BF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 23431179
    177959 4v9b:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 23431179
    177960 4v9b:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 23431179
    177961 4v9b:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    177962 4v9b:BK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 23431179
    177963 4v9b:BM (3.1) BS01 rna ? GO:0003729 ... P60488 23431179
    177964 4v9b:BN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 23431179
    177965 4v9b:BN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 23431179
    177966 4v9b:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 23431179
    177967 4v9b:BP (3.1) BS01 rna ? GO:0000049 ... P60489 23431179
    177968 4v9b:BP (3.1) BS02 rna ? GO:0000049 ... P60489 23431179
    177969 4v9b:BQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 23431179
    177970 4v9b:BQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 23431179
    177971 4v9b:BR (3.1) BS01 rna ? GO:0003735 ... P60490 23431179
    177972 4v9b:BR (3.1) BS02 rna ? GO:0003735 ... P60490 23431179
    177973 4v9b:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 23431179
    177974 4v9b:BT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 23431179
    177975 4v9b:BU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 23431179
    177976 4v9b:BV (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 23431179
    177977 4v9b:BV (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 23431179
    177978 4v9b:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 23431179
    177979 4v9b:BX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 23431179
    177980 4v9b:BX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 23431179
    177981 4v9b:BZ (3.1) BS01 rna ? GO:0003735 ... P60494 23431179
    177982 4v9b:BZ (3.1) BS02 rna ? GO:0003735 ... P60494 23431179
    177983 4v9b:CE (3.1) BS01 rna ? GO:0003735 ... P80371 23431179
    177984 4v9b:CF (3.1) BS01 rna ? GO:0003676 ... P80372 23431179
    177985 4v9b:CG (3.1) BS01 rna ? GO:0003723 ... P80373 23431179
    177986 4v9b:CG (3.1) BS02 MG ? GO:0003723 ... P80373 23431179
    177987 4v9b:CG (3.1) BS03 ZN ? GO:0003723 ... P80373 23431179
    177988 4v9b:CH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 23431179
    177989 4v9b:CI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 23431179
    177990 4v9b:CJ (3.1) BS01 rna ? GO:0000028 ... P17291 23431179
    177991 4v9b:CJ (3.1) BS02 rna ? GO:0000028 ... P17291 23431179
    177992 4v9b:CK (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    177993 4v9b:CL (3.1) BS01 rna ? GO:0000049 ... P80374 23431179
    177994 4v9b:CM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 23431179
    177995 4v9b:CN (3.1) BS01 rna ? GO:0003735 ... P80376 23431179
    177996 4v9b:CN (3.1) BS02 MG ? GO:0003735 ... P80376 23431179
    177997 4v9b:CO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 23431179
    177998 4v9b:CP (3.1) BS01 rna ? GO:0000049 ... P80377 23431179
    177999 4v9b:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 23431179
    178000 4v9b:CQ (3.1) BS02 ZN N/A GO:0003735 ... N/A 23431179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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