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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177601 4v99:Ct (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177602 4v99:Cu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177603 4v99:Cy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177604 4v99:Cz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177605 4v99:D4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177606 4v99:D5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177607 4v99:DA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177608 4v99:DB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177609 4v99:DF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177610 4v99:DG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177611 4v99:DK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177612 4v99:DL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177613 4v99:DP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177614 4v99:DP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177615 4v99:DQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177616 4v99:DU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177617 4v99:DV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177618 4v99:DZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177619 4v99:Da (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177620 4v99:De (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177621 4v99:Df (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177622 4v99:Dj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177623 4v99:Dj (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177624 4v99:Dk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177625 4v99:Do (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177626 4v99:Dp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177627 4v99:Dt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177628 4v99:Du (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177629 4v99:Dy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177630 4v99:Dz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177631 4v99:E4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177632 4v99:E5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177633 4v99:EA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177634 4v99:EB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177635 4v99:EF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177636 4v99:EG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177637 4v99:EK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177638 4v99:EL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177639 4v99:EP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177640 4v99:EQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177641 4v99:EU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177642 4v99:EV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177643 4v99:EZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177644 4v99:Ea (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177645 4v99:Ee (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177646 4v99:Ef (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177647 4v99:Ej (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177648 4v99:Ek (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177649 4v99:Eo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177650 4v99:Ep (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177651 4v99:Et (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177652 4v99:Eu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177653 4v99:Ey (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177654 4v99:Ez (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177655 4v99:F4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177656 4v99:F5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177657 4v99:FA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177658 4v99:FB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177659 4v99:FF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177660 4v99:FG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177661 4v99:FK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177662 4v99:FL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177663 4v99:FP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177664 4v99:FQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177665 4v99:FU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177666 4v99:FU (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177667 4v99:FV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177668 4v99:FZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177669 4v99:Fa (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177670 4v99:Fe (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177671 4v99:Ff (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177672 4v99:Fj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177673 4v99:Fk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177674 4v99:Fk (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177675 4v99:Fo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177676 4v99:Fo (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177677 4v99:Fp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177678 4v99:Ft (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177679 4v99:Fu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177680 4v99:Fy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177681 4v99:Fz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177682 4v99:G4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177683 4v99:G5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177684 4v99:GA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177685 4v99:GB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177686 4v99:GF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177687 4v99:GG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177688 4v99:GK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177689 4v99:GL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177690 4v99:GL (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177691 4v99:GP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177692 4v99:GQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177693 4v99:GU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177694 4v99:GU (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177695 4v99:GV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177696 4v99:GW (2.9) BS01 CA ? GO:0005198 ... P89036 23123270
    177697 4v99:GZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177698 4v99:Ga (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177699 4v99:Ge (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177700 4v99:Ge (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177701 4v99:Gf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177702 4v99:Gj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177703 4v99:Gk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177704 4v99:Go (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177705 4v99:Gp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177706 4v99:Gt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177707 4v99:Gu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177708 4v99:Gy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177709 4v99:Gz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177710 4v99:H4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177711 4v99:H5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177712 4v99:HA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177713 4v99:HB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177714 4v99:HF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177715 4v99:HG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177716 4v99:HK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177717 4v99:HL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177718 4v99:HP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177719 4v99:HP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177720 4v99:HQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177721 4v99:HU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177722 4v99:HV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177723 4v99:HZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177724 4v99:HZ (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177725 4v99:Ha (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177726 4v99:He (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177727 4v99:Hf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177728 4v99:Hg (2.9) BS01 CA ? GO:0005198 ... P89036 23123270
    177729 4v99:Hj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177730 4v99:Hk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177731 4v99:Ho (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177732 4v99:Ht (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177733 4v99:Ht (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177734 4v99:Hu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177735 4v99:Hy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177736 4v99:Hz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177737 4v99:I4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177738 4v99:I5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177739 4v99:IA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177740 4v99:IB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177741 4v99:IF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177742 4v99:IG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177743 4v99:IK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177744 4v99:IL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177745 4v99:IP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177746 4v99:IQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177747 4v99:IU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177748 4v99:IV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177749 4v99:IZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177750 4v99:Ia (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177751 4v99:Ie (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177752 4v99:If (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177753 4v99:Ij (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177754 4v99:Ik (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177755 4v99:Io (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177756 4v99:Ip (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177757 4v99:It (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177758 4v99:Iu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177759 4v99:Iy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177760 4v99:Iz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177761 4v99:J4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177762 4v99:J5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177763 4v99:JA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177764 4v99:JB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177765 4v99:JF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177766 4v99:JG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177767 4v99:JK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177768 4v99:JL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177769 4v99:JL (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177770 4v99:JP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177771 4v99:JQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177772 4v99:JU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177773 4v99:JV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177774 4v99:JZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177775 4v99:Ja (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177776 4v99:Je (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177777 4v99:Jf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177778 4v99:Jj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177779 4v99:Jj (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177780 4v99:Jk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177781 4v99:Jo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177782 4v99:Jp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177783 4v99:Jt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177784 4v99:Ju (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177785 4v99:Jy (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177786 4v99:Jy (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177787 4v99:Jz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177788 4v9a:AE (3.2999) BS01 rna ? GO:0003735 ... P80371 23431179
    177789 4v9a:AF (3.2999) BS01 rna ? GO:0003676 ... P80372 23431179
    177790 4v9a:AG (3.2999) BS01 rna ? GO:0003723 ... P80373 23431179
    177791 4v9a:AG (3.2999) BS02 ZN ? GO:0003723 ... P80373 23431179
    177792 4v9a:AH (3.2999) BS01 rna ? GO:0003723 ... Q5SHQ5 23431179
    177793 4v9a:AI (3.2999) BS01 rna ? GO:0003735 ... Q5SLP8 23431179
    177794 4v9a:AJ (3.2999) BS01 rna ? GO:0000028 ... P17291 23431179
    177795 4v9a:AK (3.2999) BS01 rna N/A GO:0003735 ... N/A 23431179
    177796 4v9a:AL (3.2999) BS01 rna ? GO:0000049 ... P80374 23431179
    177797 4v9a:AL (3.2999) BS02 rna ? GO:0000049 ... P80374 23431179
    177798 4v9a:AM (3.2999) BS01 rna ? GO:0000049 ... Q5SHN7 23431179
    177799 4v9a:AN (3.2999) BS01 rna ? GO:0003735 ... P80376 23431179
    177800 4v9a:AO (3.2999) BS01 rna ? GO:0000049 ... Q5SHN3 23431179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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