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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177401 4v97:B7 (3.516) BS01 rna ? GO:0003735 ... P80340 23630274
    177402 4v97:B8 (3.516) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    177403 4v97:B9 (3.516) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    177404 4v97:BC (3.516) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    177405 4v97:BC (3.516) BS02 rna ? GO:0000049 ... Q5SLP7 23630274
    177406 4v97:BD (3.516) BS01 rna ? GO:0002181 ... P60405 23630274
    177407 4v97:BD (3.516) BS02 rna ? GO:0002181 ... P60405 23630274
    177408 4v97:BD (3.516) BS03 MG ? GO:0002181 ... P60405 23630274
    177409 4v97:BD (3.516) BS04 MG ? GO:0002181 ... P60405 23630274
    177410 4v97:BE (3.516) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    177411 4v97:BE (3.516) BS02 MG ? GO:0003735 ... Q5SHN8 23630274
    177412 4v97:BF (3.516) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    177413 4v97:BF (3.516) BS02 MG ? GO:0003735 ... Q5SHN9 23630274
    177414 4v97:BG (3.516) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    177415 4v97:BG (3.516) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    177416 4v97:BG (3.516) BS03 rna ? GO:0000049 ... Q5SHQ0 23630274
    177417 4v97:BH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177418 4v97:BI (3.516) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    177419 4v97:BN (3.516) BS01 rna ? GO:0003729 ... P60488 23630274
    177420 4v97:BN (3.516) BS02 MG ? GO:0003729 ... P60488 23630274
    177421 4v97:BO (3.516) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    177422 4v97:BO (3.516) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    177423 4v97:BP (3.516) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    177424 4v97:BQ (3.516) BS01 rna ? GO:0000049 ... P60489 23630274
    177425 4v97:BQ (3.516) BS02 rna ? GO:0000049 ... P60489 23630274
    177426 4v97:BR (3.516) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    177427 4v97:BS (3.516) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    177428 4v97:BS (3.516) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    177429 4v97:BT (3.516) BS01 rna ? GO:0003735 ... P60490 23630274
    177430 4v97:BT (3.516) BS02 rna ? GO:0003735 ... P60490 23630274
    177431 4v97:BU (3.516) BS01 rna ? GO:0000027 ... P60491 23630274
    177432 4v97:BU (3.516) BS02 MG ? GO:0000027 ... P60491 23630274
    177433 4v97:BV (3.516) BS01 rna ? GO:0003723 ... P60492 23630274
    177434 4v97:BW (3.516) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    177435 4v97:BX (3.516) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    177436 4v97:BY (3.516) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    177437 4v97:BZ (3.516) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    177438 4v97:BZ (3.516) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    177439 4v97:CB (3.516) BS01 rna ? GO:0003735 ... P80371 23630274
    177440 4v97:CC (3.516) BS01 rna ? GO:0003676 ... P80372 23630274
    177441 4v97:CD (3.516) BS01 rna ? GO:0003723 ... P80373 23630274
    177442 4v97:CD (3.516) BS02 ZN ? GO:0003723 ... P80373 23630274
    177443 4v97:CE (3.516) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    177444 4v97:CF (3.516) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    177445 4v97:CG (3.516) BS01 rna ? GO:0000028 ... P17291 23630274
    177446 4v97:CG (3.516) BS02 rna ? GO:0000028 ... P17291 23630274
    177447 4v97:CH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177448 4v97:CI (3.516) BS01 rna ? GO:0000049 ... P80374 23630274
    177449 4v97:CI (3.516) BS02 rna ? GO:0000049 ... P80374 23630274
    177450 4v97:CJ (3.516) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    177451 4v97:CK (3.516) BS01 rna ? GO:0003735 ... P80376 23630274
    177452 4v97:CL (3.516) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    177453 4v97:CM (3.516) BS01 rna ? GO:0000049 ... P80377 23630274
    177454 4v97:CM (3.516) BS02 rna ? GO:0000049 ... P80377 23630274
    177455 4v97:CM (3.516) BS03 rna ? GO:0000049 ... P80377 23630274
    177456 4v97:CN (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177457 4v97:CN (3.516) BS02 ZN N/A GO:0003735 ... N/A 23630274
    177458 4v97:CO (3.516) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    177459 4v97:CO (3.516) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    177460 4v97:CP (3.516) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    177461 4v97:CQ (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177462 4v97:CR (3.516) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    177463 4v97:CS (3.516) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    177464 4v97:CT (3.516) BS01 rna ? GO:0003723 ... P80380 23630274
    177465 4v97:D0 (3.516) BS01 rna ? GO:0003735 ... P60493 23630274
    177466 4v97:D0 (3.516) BS02 rna ? GO:0003735 ... P60493 23630274
    177467 4v97:D0 (3.516) BS03 rna ? GO:0003735 ... P60493 23630274
    177468 4v97:D1 (3.516) BS01 rna ? GO:0003735 ... P60494 23630274
    177469 4v97:D2 (3.516) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    177470 4v97:D3 (3.516) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    177471 4v97:D3 (3.516) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    177472 4v97:D4 (3.516) BS01 rna ? GO:0003735 ... Q5SJE1 23630274
    177473 4v97:D5 (3.516) BS01 rna ? GO:0003735 ... P80339 23630274
    177474 4v97:D6 (3.516) BS01 rna ? GO:0000049 ... P35871 23630274
    177475 4v97:D7 (3.516) BS01 rna ? GO:0003735 ... P80340 23630274
    177476 4v97:D8 (3.516) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    177477 4v97:D9 (3.516) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    177478 4v97:DC (3.516) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    177479 4v97:DD (3.516) BS01 rna ? GO:0002181 ... P60405 23630274
    177480 4v97:DD (3.516) BS02 rna ? GO:0002181 ... P60405 23630274
    177481 4v97:DD (3.516) BS03 MG ? GO:0002181 ... P60405 23630274
    177482 4v97:DE (3.516) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    177483 4v97:DF (3.516) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    177484 4v97:DF (3.516) BS02 MG ? GO:0003735 ... Q5SHN9 23630274
    177485 4v97:DG (3.516) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    177486 4v97:DG (3.516) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    177487 4v97:DH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177488 4v97:DI (3.516) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    177489 4v97:DI (3.516) BS02 rna ? GO:0003735 ... Q5SLQ1 23630274
    177490 4v97:DN (3.516) BS01 rna ? GO:0003729 ... P60488 23630274
    177491 4v97:DO (3.516) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    177492 4v97:DO (3.516) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    177493 4v97:DP (3.516) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    177494 4v97:DQ (3.516) BS01 rna ? GO:0000049 ... P60489 23630274
    177495 4v97:DQ (3.516) BS02 rna ? GO:0000049 ... P60489 23630274
    177496 4v97:DQ (3.516) BS03 MG ? GO:0000049 ... P60489 23630274
    177497 4v97:DR (3.516) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    177498 4v97:DS (3.516) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    177499 4v97:DS (3.516) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    177500 4v97:DT (3.516) BS01 rna ? GO:0003735 ... P60490 23630274
    177501 4v97:DT (3.516) BS02 rna ? GO:0003735 ... P60490 23630274
    177502 4v97:DU (3.516) BS01 rna ? GO:0000027 ... P60491 23630274
    177503 4v97:DU (3.516) BS02 MG ? GO:0000027 ... P60491 23630274
    177504 4v97:DV (3.516) BS01 rna ? GO:0003723 ... P60492 23630274
    177505 4v97:DW (3.516) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    177506 4v97:DX (3.516) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    177507 4v97:DY (3.516) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    177508 4v97:DZ (3.516) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    177509 4v97:DZ (3.516) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    177510 4v98:A2 (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177511 4v98:AF (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177512 4v98:AN (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177513 4v98:AV (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177514 4v98:Ad (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177515 4v98:Al (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177516 4v98:At (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177517 4v98:B2 (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177518 4v98:BF (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177519 4v98:BN (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177520 4v98:BV (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177521 4v98:Bd (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177522 4v98:Bl (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177523 4v98:Bt (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177524 4v98:CF (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177525 4v98:CN (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177526 4v98:CV (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177527 4v98:Cd (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177528 4v98:Cl (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177529 4v98:Ct (3.1) BS01 peptide ? GO:0000245 ... Q9VVX0 23333303
    177530 4v99:A4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177531 4v99:A5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177532 4v99:AA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177533 4v99:AB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177534 4v99:AF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177535 4v99:AG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177536 4v99:AK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177537 4v99:AL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177538 4v99:AP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177539 4v99:AP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177540 4v99:AQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177541 4v99:AU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177542 4v99:AV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177543 4v99:AZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177544 4v99:Aa (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177545 4v99:Ae (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177546 4v99:Af (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177547 4v99:Aj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177548 4v99:Ak (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177549 4v99:Ao (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177550 4v99:Ap (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177551 4v99:At (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177552 4v99:Au (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177553 4v99:Au (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177554 4v99:Ay (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177555 4v99:Az (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177556 4v99:B4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177557 4v99:B5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177558 4v99:BA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177559 4v99:BB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177560 4v99:BF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177561 4v99:BG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177562 4v99:BK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177563 4v99:BL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177564 4v99:BP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177565 4v99:BQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177566 4v99:BU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177567 4v99:BV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177568 4v99:BZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177569 4v99:Ba (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177570 4v99:Be (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177571 4v99:Bf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177572 4v99:Bj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177573 4v99:Bk (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177574 4v99:Bo (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177575 4v99:Bp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177576 4v99:Bt (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177577 4v99:Bu (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177578 4v99:By (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177579 4v99:Bz (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177580 4v99:C4 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177581 4v99:C5 (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177582 4v99:CA (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177583 4v99:CB (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177584 4v99:CF (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177585 4v99:CG (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177586 4v99:CK (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177587 4v99:CL (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177588 4v99:CP (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177589 4v99:CP (2.9) BS02 CA ? GO:0005198 ... P89036 23123270
    177590 4v99:CQ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177591 4v99:CU (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177592 4v99:CV (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177593 4v99:CZ (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177594 4v99:Ca (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177595 4v99:Ce (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177596 4v99:Cf (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177597 4v99:Cj (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177598 4v99:Ck (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177599 4v99:Co (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    177600 4v99:Cp (2.9) BS01 rna ? GO:0005198 ... P89036 23123270
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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