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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177201 4v94:n (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    177202 4v94:n (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    177203 4v94:o (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    177204 4v94:o (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    177205 4v94:p (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    177206 4v94:p (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    177207 4v95:AB (3.2) BS01 rna ? GO:0003735 ... P80371 22422986
    177208 4v95:AC (3.2) BS01 rna ? GO:0003676 ... P80372 22422986
    177209 4v95:AD (3.2) BS01 rna ? GO:0003723 ... P80373 22422986
    177210 4v95:AD (3.2) BS02 ZN ? GO:0003723 ... P80373 22422986
    177211 4v95:AE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 22422986
    177212 4v95:AF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 22422986
    177213 4v95:AG (3.2) BS01 rna ? GO:0000028 ... P17291 22422986
    177214 4v95:AH (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177215 4v95:AI (3.2) BS01 rna ? GO:0000049 ... P80374 22422986
    177216 4v95:AJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 22422986
    177217 4v95:AK (3.2) BS01 rna ? GO:0003735 ... P80376 22422986
    177218 4v95:AK (3.2) BS02 MG ? GO:0003735 ... P80376 22422986
    177219 4v95:AL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 22422986
    177220 4v95:AM (3.2) BS01 rna ? GO:0000049 ... P80377 22422986
    177221 4v95:AM (3.2) BS02 rna ? GO:0000049 ... P80377 22422986
    177222 4v95:AN (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177223 4v95:AN (3.2) BS02 ZN N/A GO:0003735 ... N/A 22422986
    177224 4v95:AO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 22422986
    177225 4v95:AO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 22422986
    177226 4v95:AP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 22422986
    177227 4v95:AQ (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177228 4v95:AQ (3.2) BS02 MG N/A GO:0003735 ... N/A 22422986
    177229 4v95:AR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 22422986
    177230 4v95:AS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 22422986
    177231 4v95:AT (3.2) BS01 rna ? GO:0003723 ... P80380 22422986
    177232 4v95:AY (3.2) BS01 rna 3.1.1.29 GO:0003747 ... P40711 22422986
    177233 4v95:AY (3.2) BS02 rna 3.1.1.29 GO:0003747 ... P40711 22422986
    177234 4v95:AY (3.2) BS03 rna 3.1.1.29 GO:0003747 ... P40711 22422986
    177235 4v95:B0 (3.2) BS01 rna ? GO:0003735 ... P60493 22422986
    177236 4v95:B0 (3.2) BS02 rna ? GO:0003735 ... P60493 22422986
    177237 4v95:B0 (3.2) BS03 MG ? GO:0003735 ... P60493 22422986
    177238 4v95:B1 (3.2) BS01 rna ? GO:0003735 ... P60494 22422986
    177239 4v95:B2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 22422986
    177240 4v95:B3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 22422986
    177241 4v95:B3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 22422986
    177242 4v95:B3 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 22422986
    177243 4v95:B4 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 22422986
    177244 4v95:B4 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 22422986
    177245 4v95:B5 (3.2) BS01 rna ? GO:0003735 ... P80339 22422986
    177246 4v95:B5 (3.2) BS02 ZN ? GO:0003735 ... P80339 22422986
    177247 4v95:B6 (3.2) BS01 rna ? GO:0000049 ... P35871 22422986
    177248 4v95:B6 (3.2) BS02 ZN ? GO:0000049 ... P35871 22422986
    177249 4v95:B7 (3.2) BS01 rna ? GO:0003735 ... P80340 22422986
    177250 4v95:B8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 22422986
    177251 4v95:B9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 22422986
    177252 4v95:B9 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 22422986
    177253 4v95:BD (3.2) BS01 rna ? GO:0002181 ... P60405 22422986
    177254 4v95:BD (3.2) BS02 rna ? GO:0002181 ... P60405 22422986
    177255 4v95:BD (3.2) BS03 MG ? GO:0002181 ... P60405 22422986
    177256 4v95:BE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 22422986
    177257 4v95:BE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 22422986
    177258 4v95:BF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 22422986
    177259 4v95:BF (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 22422986
    177260 4v95:BF (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 22422986
    177261 4v95:BF (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 22422986
    177262 4v95:BG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 22422986
    177263 4v95:BG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 22422986
    177264 4v95:BG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 22422986
    177265 4v95:BG (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 22422986
    177266 4v95:BH (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177267 4v95:BI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 22422986
    177268 4v95:BN (3.2) BS01 rna ? GO:0003729 ... P60488 22422986
    177269 4v95:BO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 22422986
    177270 4v95:BO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 22422986
    177271 4v95:BO (3.2) BS03 MG ? GO:0003735 ... Q5SHP8 22422986
    177272 4v95:BP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 22422986
    177273 4v95:BQ (3.2) BS01 rna ? GO:0000049 ... P60489 22422986
    177274 4v95:BQ (3.2) BS02 rna ? GO:0000049 ... P60489 22422986
    177275 4v95:BR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 22422986
    177276 4v95:BS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 22422986
    177277 4v95:BS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 22422986
    177278 4v95:BT (3.2) BS01 rna ? GO:0003735 ... P60490 22422986
    177279 4v95:BT (3.2) BS02 rna ? GO:0003735 ... P60490 22422986
    177280 4v95:BU (3.2) BS01 rna ? GO:0000027 ... P60491 22422986
    177281 4v95:BU (3.2) BS02 MG ? GO:0000027 ... P60491 22422986
    177282 4v95:BV (3.2) BS01 rna ? GO:0003723 ... P60492 22422986
    177283 4v95:BV (3.2) BS02 MG ? GO:0003723 ... P60492 22422986
    177284 4v95:BW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 22422986
    177285 4v95:BX (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 22422986
    177286 4v95:BY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 22422986
    177287 4v95:BY (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 22422986
    177288 4v95:BZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 22422986
    177289 4v95:BZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 22422986
    177290 4v95:CB (3.2) BS01 rna ? GO:0003735 ... P80371 22422986
    177291 4v95:CC (3.2) BS01 rna ? GO:0003676 ... P80372 22422986
    177292 4v95:CD (3.2) BS01 rna ? GO:0003723 ... P80373 22422986
    177293 4v95:CE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 22422986
    177294 4v95:CF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 22422986
    177295 4v95:CG (3.2) BS01 rna ? GO:0000028 ... P17291 22422986
    177296 4v95:CG (3.2) BS02 rna ? GO:0000028 ... P17291 22422986
    177297 4v95:CH (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177298 4v95:CI (3.2) BS01 rna ? GO:0000049 ... P80374 22422986
    177299 4v95:CJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 22422986
    177300 4v95:CK (3.2) BS01 rna ? GO:0003735 ... P80376 22422986
    177301 4v95:CK (3.2) BS02 MG ? GO:0003735 ... P80376 22422986
    177302 4v95:CL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 22422986
    177303 4v95:CM (3.2) BS01 rna ? GO:0000049 ... P80377 22422986
    177304 4v95:CN (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177305 4v95:CN (3.2) BS02 ZN N/A GO:0003735 ... N/A 22422986
    177306 4v95:CO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 22422986
    177307 4v95:CO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 22422986
    177308 4v95:CP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 22422986
    177309 4v95:CQ (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177310 4v95:CR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 22422986
    177311 4v95:CS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 22422986
    177312 4v95:CT (3.2) BS01 rna ? GO:0003723 ... P80380 22422986
    177313 4v95:D0 (3.2) BS01 rna ? GO:0003735 ... P60493 22422986
    177314 4v95:D0 (3.2) BS02 rna ? GO:0003735 ... P60493 22422986
    177315 4v95:D1 (3.2) BS01 rna ? GO:0003735 ... P60494 22422986
    177316 4v95:D2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 22422986
    177317 4v95:D3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 22422986
    177318 4v95:D3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 22422986
    177319 4v95:D4 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 22422986
    177320 4v95:D4 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 22422986
    177321 4v95:D5 (3.2) BS01 rna ? GO:0003735 ... P80339 22422986
    177322 4v95:D5 (3.2) BS02 ZN ? GO:0003735 ... P80339 22422986
    177323 4v95:D6 (3.2) BS01 rna ? GO:0000049 ... P35871 22422986
    177324 4v95:D6 (3.2) BS02 ZN ? GO:0000049 ... P35871 22422986
    177325 4v95:D6 (3.2) BS03 MG ? GO:0000049 ... P35871 22422986
    177326 4v95:D7 (3.2) BS01 rna ? GO:0003735 ... P80340 22422986
    177327 4v95:D7 (3.2) BS02 MG ? GO:0003735 ... P80340 22422986
    177328 4v95:D8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 22422986
    177329 4v95:D9 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 22422986
    177330 4v95:D9 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 22422986
    177331 4v95:DD (3.2) BS01 rna ? GO:0002181 ... P60405 22422986
    177332 4v95:DD (3.2) BS02 rna ? GO:0002181 ... P60405 22422986
    177333 4v95:DD (3.2) BS03 MG ? GO:0002181 ... P60405 22422986
    177334 4v95:DD (3.2) BS04 MG ? GO:0002181 ... P60405 22422986
    177335 4v95:DD (3.2) BS05 MG ? GO:0002181 ... P60405 22422986
    177336 4v95:DE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 22422986
    177337 4v95:DE (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 22422986
    177338 4v95:DF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 22422986
    177339 4v95:DG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 22422986
    177340 4v95:DG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 22422986
    177341 4v95:DG (3.2) BS03 rna ? GO:0000049 ... Q5SHQ0 22422986
    177342 4v95:DH (3.2) BS01 rna N/A GO:0003735 ... N/A 22422986
    177343 4v95:DI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 22422986
    177344 4v95:DN (3.2) BS01 rna ? GO:0003729 ... P60488 22422986
    177345 4v95:DO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 22422986
    177346 4v95:DO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 22422986
    177347 4v95:DP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 22422986
    177348 4v95:DP (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 22422986
    177349 4v95:DQ (3.2) BS01 rna ? GO:0000049 ... P60489 22422986
    177350 4v95:DQ (3.2) BS02 rna ? GO:0000049 ... P60489 22422986
    177351 4v95:DR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 22422986
    177352 4v95:DS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 22422986
    177353 4v95:DS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 22422986
    177354 4v95:DT (3.2) BS01 rna ? GO:0003735 ... P60490 22422986
    177355 4v95:DT (3.2) BS02 rna ? GO:0003735 ... P60490 22422986
    177356 4v95:DU (3.2) BS01 rna ? GO:0000027 ... P60491 22422986
    177357 4v95:DV (3.2) BS01 rna ? GO:0003723 ... P60492 22422986
    177358 4v95:DV (3.2) BS02 MG ? GO:0003723 ... P60492 22422986
    177359 4v95:DW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 22422986
    177360 4v95:DX (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 22422986
    177361 4v95:DY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 22422986
    177362 4v95:DY (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 22422986
    177363 4v95:DZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 22422986
    177364 4v95:DZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 22422986
    177365 4v97:AB (3.516) BS01 rna ? GO:0003735 ... P80371 23630274
    177366 4v97:AC (3.516) BS01 rna ? GO:0003676 ... P80372 23630274
    177367 4v97:AD (3.516) BS01 rna ? GO:0003723 ... P80373 23630274
    177368 4v97:AD (3.516) BS02 ZN ? GO:0003723 ... P80373 23630274
    177369 4v97:AE (3.516) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    177370 4v97:AF (3.516) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    177371 4v97:AG (3.516) BS01 rna ? GO:0000028 ... P17291 23630274
    177372 4v97:AG (3.516) BS02 rna ? GO:0000028 ... P17291 23630274
    177373 4v97:AG (3.516) BS03 rna ? GO:0000028 ... P17291 23630274
    177374 4v97:AH (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177375 4v97:AI (3.516) BS01 rna ? GO:0000049 ... P80374 23630274
    177376 4v97:AJ (3.516) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    177377 4v97:AJ (3.516) BS02 rna ? GO:0000049 ... Q5SHN7 23630274
    177378 4v97:AK (3.516) BS01 rna ? GO:0003735 ... P80376 23630274
    177379 4v97:AL (3.516) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    177380 4v97:AM (3.516) BS01 rna ? GO:0000049 ... P80377 23630274
    177381 4v97:AM (3.516) BS02 rna ? GO:0000049 ... P80377 23630274
    177382 4v97:AM (3.516) BS03 rna ? GO:0000049 ... P80377 23630274
    177383 4v97:AN (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177384 4v97:AN (3.516) BS02 ZN N/A GO:0003735 ... N/A 23630274
    177385 4v97:AO (3.516) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    177386 4v97:AO (3.516) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    177387 4v97:AP (3.516) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    177388 4v97:AQ (3.516) BS01 rna N/A GO:0003735 ... N/A 23630274
    177389 4v97:AR (3.516) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    177390 4v97:AS (3.516) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    177391 4v97:AT (3.516) BS01 rna ? GO:0003723 ... P80380 23630274
    177392 4v97:B0 (3.516) BS01 rna ? GO:0003735 ... P60493 23630274
    177393 4v97:B0 (3.516) BS02 rna ? GO:0003735 ... P60493 23630274
    177394 4v97:B0 (3.516) BS03 rna ? GO:0003735 ... P60493 23630274
    177395 4v97:B1 (3.516) BS01 rna ? GO:0003735 ... P60494 23630274
    177396 4v97:B2 (3.516) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    177397 4v97:B3 (3.516) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    177398 4v97:B3 (3.516) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    177399 4v97:B5 (3.516) BS01 rna ? GO:0003735 ... P80339 23630274
    177400 4v97:B6 (3.516) BS01 rna ? GO:0000049 ... P35871 23630274
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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