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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    177001 4v90:AL (2.95) BS01 rna ? GO:0000049 ... Q5SHN3 23912278
    177002 4v90:AM (2.95) BS01 rna ? GO:0000049 ... P80377 23912278
    177003 4v90:AN (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    177004 4v90:AN (2.95) BS02 ZN N/A GO:0003735 ... N/A 23912278
    177005 4v90:AO (2.95) BS01 rna ? GO:0003735 ... Q5SJ76 23912278
    177006 4v90:AO (2.95) BS02 rna ? GO:0003735 ... Q5SJ76 23912278
    177007 4v90:AP (2.95) BS01 rna ? GO:0003735 ... Q5SJH3 23912278
    177008 4v90:AQ (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    177009 4v90:AR (2.95) BS01 rna ? GO:0003735 ... Q5SLQ0 23912278
    177010 4v90:AS (2.95) BS01 rna ? GO:0000028 ... Q5SHP2 23912278
    177011 4v90:AT (2.95) BS01 rna ? GO:0003723 ... P80380 23912278
    177012 4v90:AY (2.95) BS01 rna ? GO:0003746 ... Q5SHN5 23912278
    177013 4v90:AY (2.95) BS02 rna ? GO:0003746 ... Q5SHN5 23912278
    177014 4v90:AY (2.95) BS03 MG ? GO:0003746 ... Q5SHN5 23912278
    177015 4v90:B0 (2.95) BS01 rna ? GO:0003735 ... P60493 23912278
    177016 4v90:B0 (2.95) BS02 rna ? GO:0003735 ... P60493 23912278
    177017 4v90:B1 (2.95) BS01 rna ? GO:0003735 ... P60494 23912278
    177018 4v90:B2 (2.95) BS01 rna ? GO:0003735 ... Q5SHP6 23912278
    177019 4v90:B3 (2.95) BS01 rna ? GO:0003735 ... Q5SHQ6 23912278
    177020 4v90:B3 (2.95) BS02 rna ? GO:0003735 ... Q5SHQ6 23912278
    177021 4v90:B4 (2.95) BS01 rna ? GO:0003735 ... Q5SJE1 23912278
    177022 4v90:B5 (2.95) BS01 rna ? GO:0003735 ... P80339 23912278
    177023 4v90:B6 (2.95) BS01 rna ? GO:0000049 ... P35871 23912278
    177024 4v90:B7 (2.95) BS01 rna ? GO:0003735 ... P80340 23912278
    177025 4v90:B8 (2.95) BS01 rna ? GO:0003735 ... Q5SKU1 23912278
    177026 4v90:B9 (2.95) BS01 rna ? GO:0003735 ... Q5SHR2 23912278
    177027 4v90:B9 (2.95) BS02 ZN ? GO:0003735 ... Q5SHR2 23912278
    177028 4v90:BC (2.95) BS01 rna ? GO:0000049 ... Q5SLP7 23912278
    177029 4v90:BC (2.95) BS02 rna ? GO:0000049 ... Q5SLP7 23912278
    177030 4v90:BD (2.95) BS01 rna ? GO:0002181 ... P60405 23912278
    177031 4v90:BD (2.95) BS02 rna ? GO:0002181 ... P60405 23912278
    177032 4v90:BD (2.95) BS03 MG ? GO:0002181 ... P60405 23912278
    177033 4v90:BE (2.95) BS01 rna ? GO:0003735 ... Q5SHN8 23912278
    177034 4v90:BF (2.95) BS01 rna ? GO:0003735 ... Q5SHN9 23912278
    177035 4v90:BG (2.95) BS01 rna ? GO:0000049 ... Q5SHQ0 23912278
    177036 4v90:BG (2.95) BS02 rna ? GO:0000049 ... Q5SHQ0 23912278
    177037 4v90:BH (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    177038 4v90:BN (2.95) BS01 rna ? GO:0003729 ... P60488 23912278
    177039 4v90:BO (2.95) BS01 rna ? GO:0003735 ... Q5SHP8 23912278
    177040 4v90:BO (2.95) BS02 rna ? GO:0003735 ... Q5SHP8 23912278
    177041 4v90:BP (2.95) BS01 rna ? GO:0003735 ... Q5SHQ7 23912278
    177042 4v90:BQ (2.95) BS01 rna ? GO:0000049 ... P60489 23912278
    177043 4v90:BQ (2.95) BS02 rna ? GO:0000049 ... P60489 23912278
    177044 4v90:BR (2.95) BS01 rna ? GO:0003735 ... Q9Z9H5 23912278
    177045 4v90:BS (2.95) BS01 rna ? GO:0003735 ... Q5SHQ4 23912278
    177046 4v90:BS (2.95) BS02 rna ? GO:0003735 ... Q5SHQ4 23912278
    177047 4v90:BT (2.95) BS01 rna ? GO:0003735 ... P60490 23912278
    177048 4v90:BT (2.95) BS02 rna ? GO:0003735 ... P60490 23912278
    177049 4v90:BU (2.95) BS01 rna ? GO:0000027 ... P60491 23912278
    177050 4v90:BV (2.95) BS01 rna ? GO:0003723 ... P60492 23912278
    177051 4v90:BW (2.95) BS01 rna ? GO:0003735 ... Q5SHP3 23912278
    177052 4v90:BX (2.95) BS01 rna ? GO:0000027 ... Q5SHP0 23912278
    177053 4v90:BY (2.95) BS01 rna ? GO:0003723 ... Q5SHP9 23912278
    177054 4v90:BZ (2.95) BS01 rna ? GO:0003723 ... Q5SHZ1 23912278
    177055 4v90:BZ (2.95) BS02 rna ? GO:0003723 ... Q5SHZ1 23912278
    177056 4v90:BZ (2.95) BS03 MG ? GO:0003723 ... Q5SHZ1 23912278
    177057 4v91:A (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177058 4v91:B (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177059 4v91:C (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177060 4v91:C (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177061 4v91:D (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177062 4v91:D (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177063 4v91:E (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177064 4v91:G (3.7) BS01 rna N/A GO:0042254 ... N/A 24792965
    177065 4v91:G (3.7) BS02 rna N/A GO:0042254 ... N/A 24792965
    177066 4v91:H (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177067 4v91:I (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177068 4v91:I (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177069 4v91:J (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177070 4v91:J (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177071 4v91:L (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177072 4v91:L (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177073 4v91:M (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177074 4v91:N (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177075 4v91:N (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177076 4v91:O (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177077 4v91:P (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177078 4v91:P (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177079 4v91:Q (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177080 4v91:R (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177081 4v91:S (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177082 4v91:S (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177083 4v91:T (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177084 4v91:T (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177085 4v91:U (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177086 4v91:V (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177087 4v91:X (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177088 4v91:X (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177089 4v91:Y (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177090 4v91:Y (3.7) BS02 rna N/A GO:0003723 ... N/A 24792965
    177091 4v91:Z (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177092 4v91:a (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177093 4v91:b (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177094 4v91:d (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177095 4v91:e (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177096 4v91:f (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177097 4v91:g (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177098 4v91:h (3.7) BS01 rna N/A GO:0000463 ... N/A 24792965
    177099 4v91:h (3.7) BS02 rna N/A GO:0000463 ... N/A 24792965
    177100 4v91:i (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177101 4v91:j (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177102 4v91:j (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177103 4v91:k (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177104 4v91:l (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177105 4v91:l (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177106 4v91:m (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177107 4v91:o (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177108 4v91:p (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177109 4v91:t (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177110 4v92:BA (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177111 4v92:BB (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177112 4v92:BC (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177113 4v92:BD (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177114 4v92:BD (3.7) BS02 rna N/A GO:0003723 ... N/A 24792965
    177115 4v92:BE (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177116 4v92:BF (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177117 4v92:BF (3.7) BS02 rna N/A GO:0003723 ... N/A 24792965
    177118 4v92:BG (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177119 4v92:BH (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177120 4v92:BI (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177121 4v92:BJ (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177122 4v92:BL (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177123 4v92:BN (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177124 4v92:BO (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177125 4v92:BP (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177126 4v92:BQ (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177127 4v92:BR (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177128 4v92:BS (3.7) BS01 rna N/A GO:0003676 ... N/A 24792965
    177129 4v92:BT (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177130 4v92:BU (3.7) BS01 rna N/A GO:0003723 ... N/A 24792965
    177131 4v92:BV (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177132 4v92:BW (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177133 4v92:BX (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177134 4v92:BY (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177135 4v92:Ba (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177136 4v92:Bb (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177137 4v92:Bc (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177138 4v92:Bd (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177139 4v92:Be (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177140 4v92:Be (3.7) BS02 rna N/A GO:0003735 ... N/A 24792965
    177141 4v92:Bf (3.7) BS01 rna N/A GO:0003735 ... N/A 24792965
    177142 4v94:A (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    177143 4v94:A (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    177144 4v94:B (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    177145 4v94:B (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    177146 4v94:D (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    177147 4v94:D (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    177148 4v94:E (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    177149 4v94:E (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    177150 4v94:E (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    177151 4v94:F (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    177152 4v94:F (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    177153 4v94:F (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    177154 4v94:G (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    177155 4v94:G (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    177156 4v94:H (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    177157 4v94:H (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    177158 4v94:I (3.8) BS01 MG ? GO:0005515 ... P12612 22503819
    177159 4v94:I (3.8) BS02 ADP ? GO:0005515 ... P12612 22503819
    177160 4v94:I (3.8) BS03 BEF ? GO:0005515 ... P12612 22503819
    177161 4v94:J (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    177162 4v94:J (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    177163 4v94:L (3.8) BS01 MG ? GO:0005524 ... P39078 22503819
    177164 4v94:L (3.8) BS02 ADP ? GO:0005524 ... P39078 22503819
    177165 4v94:L (3.8) BS03 BEF ? GO:0005524 ... P39078 22503819
    177166 4v94:M (3.8) BS01 ADP ? GO:0005524 ... P40413 22503819
    177167 4v94:M (3.8) BS02 BEF ? GO:0005524 ... P40413 22503819
    177168 4v94:N (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    177169 4v94:N (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    177170 4v94:N (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    177171 4v94:O (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    177172 4v94:O (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    177173 4v94:P (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    177174 4v94:P (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    177175 4v94:a (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    177176 4v94:a (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    177177 4v94:b (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    177178 4v94:b (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    177179 4v94:d (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    177180 4v94:d (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    177181 4v94:e (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    177182 4v94:e (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    177183 4v94:e (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    177184 4v94:f (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    177185 4v94:f (3.8) BS02 ADP ? GO:0005524 ... P39079 22503819
    177186 4v94:f (3.8) BS03 BEF ? GO:0005524 ... P39079 22503819
    177187 4v94:g (3.8) BS01 ADP ? GO:0005524 ... P42943 22503819
    177188 4v94:g (3.8) BS02 BEF ? GO:0005524 ... P42943 22503819
    177189 4v94:h (3.8) BS01 ADP ? GO:0005524 ... P47079 22503819
    177190 4v94:h (3.8) BS02 BEF ? GO:0005524 ... P47079 22503819
    177191 4v94:i (3.8) BS01 ADP ? GO:0005515 ... P12612 22503819
    177192 4v94:i (3.8) BS02 BEF ? GO:0005515 ... P12612 22503819
    177193 4v94:j (3.8) BS01 ADP ? GO:0005515 ... P39076 22503819
    177194 4v94:j (3.8) BS02 BEF ? GO:0005515 ... P39076 22503819
    177195 4v94:l (3.8) BS01 ADP ? GO:0005524 ... P39078 22503819
    177196 4v94:l (3.8) BS02 BEF ? GO:0005524 ... P39078 22503819
    177197 4v94:m (3.8) BS01 MG ? GO:0005524 ... P40413 22503819
    177198 4v94:m (3.8) BS02 ADP ? GO:0005524 ... P40413 22503819
    177199 4v94:m (3.8) BS03 BEF ? GO:0005524 ... P40413 22503819
    177200 4v94:n (3.8) BS01 MG ? GO:0005524 ... P39079 22503819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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