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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176801 4v8y:AZ (4.3) BS01 rna ? GO:0002181 ... Q3E792 24200810
    176802 4v8y:BA (4.3) BS01 rna ? GO:0002181 ... P0CX46 24200810
    176803 4v8y:BA (4.3) BS02 rna ? GO:0002181 ... P0CX46 24200810
    176804 4v8y:BB (4.3) BS01 rna ? GO:0000027 ... P14126 24200810
    176805 4v8y:BC (4.3) BS01 rna ? GO:0002181 ... P10664 24200810
    176806 4v8y:BC (4.3) BS02 rna ? GO:0002181 ... P10664 24200810
    176807 4v8y:BD (4.3) BS01 rna ? GO:0000027 ... P26321 24200810
    176808 4v8y:BD (4.3) BS02 rna ? GO:0000027 ... P26321 24200810
    176809 4v8y:BE (4.3) BS01 rna ? GO:0000027 ... Q02326 24200810
    176810 4v8y:BF (4.3) BS01 rna ? GO:0000463 ... P05737 24200810
    176811 4v8y:BF (4.3) BS02 rna ? GO:0000463 ... P05737 24200810
    176812 4v8y:BG (4.3) BS01 rna ? GO:0000470 ... P17076 24200810
    176813 4v8y:BG (4.3) BS02 rna ? GO:0000470 ... P17076 24200810
    176814 4v8y:BH (4.3) BS01 rna ? GO:0002181 ... P05738 24200810
    176815 4v8y:BI (4.3) BS01 rna ? GO:0000027 ... P41805 24200810
    176816 4v8y:BI (4.3) BS02 rna ? GO:0000027 ... P41805 24200810
    176817 4v8y:BJ (4.3) BS01 rna ? GO:0000027 ... P0C0W9 24200810
    176818 4v8y:BJ (4.3) BS02 rna ? GO:0000027 ... P0C0W9 24200810
    176819 4v8y:BL (4.3) BS01 rna ? GO:0002181 ... Q12690 24200810
    176820 4v8y:BL (4.3) BS02 rna ? GO:0002181 ... Q12690 24200810
    176821 4v8y:BM (4.3) BS01 rna ? GO:0000027 ... P38754 24200810
    176822 4v8y:BN (4.3) BS01 rna ? GO:0002181 ... P05748 24200810
    176823 4v8y:BN (4.3) BS02 rna ? GO:0002181 ... P05748 24200810
    176824 4v8y:BO (4.3) BS01 rna ? GO:0000470 ... P26784 24200810
    176825 4v8y:BP (4.3) BS01 rna ? GO:0000448 ... P05740 24200810
    176826 4v8y:BP (4.3) BS02 rna ? GO:0000448 ... P05740 24200810
    176827 4v8y:BQ (4.3) BS01 rna ? GO:0002181 ... P0CX49 24200810
    176828 4v8y:BR (4.3) BS01 rna ? GO:0002181 ... P0CX83 24200810
    176829 4v8y:BR (4.3) BS02 rna ? GO:0002181 ... P0CX83 24200810
    176830 4v8y:BR (4.3) BS03 OHX ? GO:0002181 ... P0CX83 24200810
    176831 4v8y:BS (4.3) BS01 rna ? GO:0002181 ... P0CX24 24200810
    176832 4v8y:BS (4.3) BS02 rna ? GO:0002181 ... P0CX24 24200810
    176833 4v8y:BT (4.3) BS01 rna ? GO:0002181 ... Q02753 24200810
    176834 4v8y:BU (4.3) BS01 rna ? GO:0002181 ... P05749 24200810
    176835 4v8y:BV (4.3) BS01 rna ? GO:0002181 ... P0CX41 24200810
    176836 4v8y:BV (4.3) BS02 rna ? GO:0002181 ... P0CX41 24200810
    176837 4v8y:BW (4.3) BS01 rna ? GO:0002181 ... P04449 24200810
    176838 4v8y:BX (4.3) BS01 rna ? GO:0000027 ... P04456 24200810
    176839 4v8y:BX (4.3) BS02 rna ? GO:0000027 ... P04456 24200810
    176840 4v8y:BY (4.3) BS01 rna ? GO:0002181 ... P05743 24200810
    176841 4v8y:BY (4.3) BS02 rna ? GO:0002181 ... P05743 24200810
    176842 4v8y:BZ (4.3) BS01 rna ? GO:0002181 ... P0C2H6 24200810
    176843 4v8y:Ba (4.3) BS01 rna ? GO:0002181 ... P02406 24200810
    176844 4v8y:Bb (4.3) BS01 rna ? GO:0002181 ... P05747 24200810
    176845 4v8y:Bc (4.3) BS01 rna ? GO:0002181 ... P14120 24200810
    176846 4v8y:Bd (4.3) BS01 rna ? GO:0002181 ... P0C2H8 24200810
    176847 4v8y:Be (4.3) BS01 rna ? GO:0002181 ... P38061 24200810
    176848 4v8y:Bf (4.3) BS01 rna ? GO:0000027 ... P05744 24200810
    176849 4v8y:Bg (4.3) BS01 rna ? GO:0002181 ... P87262 24200810
    176850 4v8y:Bh (4.3) BS01 rna ? GO:0000463 ... P0CX85 24200810
    176851 4v8y:Bh (4.3) BS02 rna ? GO:0000463 ... P0CX85 24200810
    176852 4v8y:Bi (4.3) BS01 rna ? GO:0002181 ... P05745 24200810
    176853 4v8y:Bj (4.3) BS01 rna ? GO:0000448 ... P49166 24200810
    176854 4v8y:Bj (4.3) BS02 rna ? GO:0000448 ... P49166 24200810
    176855 4v8y:Bj (4.3) BS03 ZN ? GO:0000448 ... P49166 24200810
    176856 4v8y:Bk (4.3) BS01 rna ? GO:0002181 ... P49167 24200810
    176857 4v8y:Bl (4.3) BS01 rna ? GO:0002181 ... P04650 24200810
    176858 4v8y:Bl (4.3) BS02 rna ? GO:0002181 ... P04650 24200810
    176859 4v8y:Bm (4.3) BS01 rna ? GO:0000027 ... P0CH08 24200810
    176860 4v8y:Bm (4.3) BS02 ZN ? GO:0000027 ... P0CH08 24200810
    176861 4v8y:Bo (4.3) BS01 rna ? GO:0002181 ... P0CX27 24200810
    176862 4v8y:Bo (4.3) BS02 rna ? GO:0002181 ... P0CX27 24200810
    176863 4v8y:Bq (4.3) BS01 rna ? GO:0000027 ... P05317 24200810
    176864 4v8y:By (4.3) BS01 rna N/A GO:0003723 ... N/A 24200810
    176865 4v8y:By (4.3) BS02 rna N/A GO:0003723 ... N/A 24200810
    176866 4v8y:CL (4.3) BS01 rna N/A GO:0003723 ... N/A 24200810
    176867 4v8z:A0 (6.6) BS01 rna ? GO:0000054 ... P39938 24200810
    176868 4v8z:A0 (6.6) BS02 ZN ? GO:0000054 ... P39938 24200810
    176869 4v8z:A1 (6.6) BS01 rna ? GO:0000028 ... P35997 24200810
    176870 4v8z:A2 (6.6) BS01 rna ? GO:0000028 ... Q3E7X9 24200810
    176871 4v8z:A3 (6.6) BS01 rna ? GO:0002181 ... P41057 24200810
    176872 4v8z:A3 (6.6) BS02 ZN ? GO:0002181 ... P41057 24200810
    176873 4v8z:A3 (6.6) BS03 OHX ? GO:0002181 ... P41057 24200810
    176874 4v8z:A3 (6.6) BS04 MG ? GO:0002181 ... P41057 24200810
    176875 4v8z:A3 (6.6) BS05 MG ? GO:0002181 ... P41057 24200810
    176876 4v8z:A4 (6.6) BS01 rna ? GO:0002181 ... P0CX33 24200810
    176877 4v8z:A5 (6.6) BS01 rna ? GO:0000028 ... P05759 24200810
    176878 4v8z:A5 (6.6) BS02 ZN ? GO:0000028 ... P05759 24200810
    176879 4v8z:A6 (6.6) BS01 rna ? GO:0001965 ... P38011 24200810
    176880 4v8z:A6 (6.6) BS02 OHX ? GO:0001965 ... P38011 24200810
    176881 4v8z:A7 (6.6) BS01 rna ? GO:0000723 ... P39015 24200810
    176882 4v8z:A7 (6.6) BS02 rna ? GO:0000723 ... P39015 24200810
    176883 4v8z:A7 (6.6) BS03 rna ? GO:0000723 ... P39015 24200810
    176884 4v8z:A7 (6.6) BS04 rna ? GO:0000723 ... P39015 24200810
    176885 4v8z:AA (6.6) BS01 rna ? GO:0000028 ... P32905 24200810
    176886 4v8z:AB (6.6) BS01 rna ? GO:0000462 ... P33442 24200810
    176887 4v8z:AB (6.6) BS02 rna ? GO:0000462 ... P33442 24200810
    176888 4v8z:AB (6.6) BS03 OHX ? GO:0000462 ... P33442 24200810
    176889 4v8z:AC (6.6) BS01 rna ? GO:0000054 ... P25443 24200810
    176890 4v8z:AC (6.6) BS02 OHX ? GO:0000054 ... P25443 24200810
    176891 4v8z:AD (6.6) BS01 rna ? GO:0000054 ... P05750 24200810
    176892 4v8z:AE (6.6) BS01 rna ? GO:0002181 ... P0CX35 24200810
    176893 4v8z:AF (6.6) BS01 rna ? GO:0000028 ... P26783 24200810
    176894 4v8z:AG (6.6) BS01 rna ? GO:0000462 ... P0CX37 24200810
    176895 4v8z:AH (6.6) BS01 rna ? GO:0002181 ... P26786 24200810
    176896 4v8z:AI (6.6) BS01 rna ? GO:0000462 ... P0CX39 24200810
    176897 4v8z:AI (6.6) BS02 rna ? GO:0000462 ... P0CX39 24200810
    176898 4v8z:AI (6.6) BS03 OHX ? GO:0000462 ... P0CX39 24200810
    176899 4v8z:AJ (6.6) BS01 rna ? GO:0000462 ... O13516 24200810
    176900 4v8z:AK (6.6) BS01 rna ? GO:0000054 ... Q08745 24200810
    176901 4v8z:AL (6.6) BS01 rna ? GO:0000028 ... P0CX47 24200810
    176902 4v8z:AL (6.6) BS02 OHX ? GO:0000028 ... P0CX47 24200810
    176903 4v8z:AL (6.6) BS03 MG ? GO:0000028 ... P0CX47 24200810
    176904 4v8z:AM (6.6) BS01 rna ? GO:0000028 ... P48589 24200810
    176905 4v8z:AN (6.6) BS01 rna ? GO:0000462 ... P05756 24200810
    176906 4v8z:AN (6.6) BS02 rna ? GO:0000462 ... P05756 24200810
    176907 4v8z:AN (6.6) BS03 OHX ? GO:0000462 ... P05756 24200810
    176908 4v8z:AO (6.6) BS01 rna ? GO:0000028 ... P06367 24200810
    176909 4v8z:AP (6.6) BS01 rna ? GO:0000028 ... Q01855 24200810
    176910 4v8z:AP (6.6) BS02 rna ? GO:0000028 ... Q01855 24200810
    176911 4v8z:AP (6.6) BS03 OHX ? GO:0000028 ... Q01855 24200810
    176912 4v8z:AQ (6.6) BS01 rna ? GO:0000462 ... P0CX51 24200810
    176913 4v8z:AR (6.6) BS01 rna ? GO:0000028 ... P02407 24200810
    176914 4v8z:AS (6.6) BS01 rna ? GO:0000054 ... P0CX55 24200810
    176915 4v8z:AS (6.6) BS02 MG ? GO:0000054 ... P0CX55 24200810
    176916 4v8z:AT (6.6) BS01 rna ? GO:0000028 ... P07280 24200810
    176917 4v8z:AU (6.6) BS01 rna ? GO:0000462 ... P38701 24200810
    176918 4v8z:AV (6.6) BS01 rna ? GO:0000447 ... P0C0V8 24200810
    176919 4v8z:AW (6.6) BS01 rna ? GO:0002181 ... P0C0W1 24200810
    176920 4v8z:AX (6.6) BS01 rna ? GO:0000462 ... P0CX29 24200810
    176921 4v8z:AY (6.6) BS01 rna ? GO:0000462 ... P0CX31 24200810
    176922 4v8z:AZ (6.6) BS01 rna ? GO:0002181 ... Q3E792 24200810
    176923 4v8z:BA (6.6) BS01 rna ? GO:0002181 ... P0CX46 24200810
    176924 4v8z:BA (6.6) BS02 rna ? GO:0002181 ... P0CX46 24200810
    176925 4v8z:BB (6.6) BS01 rna ? GO:0000027 ... P14126 24200810
    176926 4v8z:BC (6.6) BS01 rna ? GO:0002181 ... P10664 24200810
    176927 4v8z:BC (6.6) BS02 rna ? GO:0002181 ... P10664 24200810
    176928 4v8z:BD (6.6) BS01 rna ? GO:0000027 ... P26321 24200810
    176929 4v8z:BD (6.6) BS02 rna ? GO:0000027 ... P26321 24200810
    176930 4v8z:BD (6.6) BS03 MG ? GO:0000027 ... P26321 24200810
    176931 4v8z:BD (6.6) BS04 MG ? GO:0000027 ... P26321 24200810
    176932 4v8z:BE (6.6) BS01 rna ? GO:0000027 ... Q02326 24200810
    176933 4v8z:BF (6.6) BS01 rna ? GO:0000463 ... P05737 24200810
    176934 4v8z:BF (6.6) BS02 rna ? GO:0000463 ... P05737 24200810
    176935 4v8z:BF (6.6) BS03 MG ? GO:0000463 ... P05737 24200810
    176936 4v8z:BG (6.6) BS01 rna ? GO:0000470 ... P17076 24200810
    176937 4v8z:BG (6.6) BS02 rna ? GO:0000470 ... P17076 24200810
    176938 4v8z:BH (6.6) BS01 rna ? GO:0002181 ... P05738 24200810
    176939 4v8z:BI (6.6) BS01 rna ? GO:0000027 ... P41805 24200810
    176940 4v8z:BI (6.6) BS02 rna ? GO:0000027 ... P41805 24200810
    176941 4v8z:BJ (6.6) BS01 rna ? GO:0000027 ... P0C0W9 24200810
    176942 4v8z:BJ (6.6) BS02 rna ? GO:0000027 ... P0C0W9 24200810
    176943 4v8z:BL (6.6) BS01 rna ? GO:0002181 ... Q12690 24200810
    176944 4v8z:BL (6.6) BS02 rna ? GO:0002181 ... Q12690 24200810
    176945 4v8z:BM (6.6) BS01 rna ? GO:0000027 ... P38754 24200810
    176946 4v8z:BN (6.6) BS01 rna ? GO:0002181 ... P05748 24200810
    176947 4v8z:BN (6.6) BS02 rna ? GO:0002181 ... P05748 24200810
    176948 4v8z:BO (6.6) BS01 rna ? GO:0000470 ... P26784 24200810
    176949 4v8z:BP (6.6) BS01 rna ? GO:0000448 ... P05740 24200810
    176950 4v8z:BP (6.6) BS02 rna ? GO:0000448 ... P05740 24200810
    176951 4v8z:BQ (6.6) BS01 rna ? GO:0002181 ... P0CX49 24200810
    176952 4v8z:BR (6.6) BS01 rna ? GO:0002181 ... P0CX83 24200810
    176953 4v8z:BR (6.6) BS02 rna ? GO:0002181 ... P0CX83 24200810
    176954 4v8z:BR (6.6) BS03 OHX ? GO:0002181 ... P0CX83 24200810
    176955 4v8z:BS (6.6) BS01 rna ? GO:0002181 ... P0CX24 24200810
    176956 4v8z:BS (6.6) BS02 rna ? GO:0002181 ... P0CX24 24200810
    176957 4v8z:BS (6.6) BS03 MG ? GO:0002181 ... P0CX24 24200810
    176958 4v8z:BT (6.6) BS01 rna ? GO:0002181 ... Q02753 24200810
    176959 4v8z:BU (6.6) BS01 rna ? GO:0002181 ... P05749 24200810
    176960 4v8z:BV (6.6) BS01 rna ? GO:0002181 ... P0CX41 24200810
    176961 4v8z:BV (6.6) BS02 rna ? GO:0002181 ... P0CX41 24200810
    176962 4v8z:BW (6.6) BS01 rna ? GO:0002181 ... P04449 24200810
    176963 4v8z:BX (6.6) BS01 rna ? GO:0000027 ... P04456 24200810
    176964 4v8z:BX (6.6) BS02 rna ? GO:0000027 ... P04456 24200810
    176965 4v8z:BY (6.6) BS01 rna ? GO:0002181 ... P05743 24200810
    176966 4v8z:BY (6.6) BS02 rna ? GO:0002181 ... P05743 24200810
    176967 4v8z:BZ (6.6) BS01 rna ? GO:0002181 ... P0C2H6 24200810
    176968 4v8z:Ba (6.6) BS01 rna ? GO:0002181 ... P02406 24200810
    176969 4v8z:Bb (6.6) BS01 rna ? GO:0002181 ... P05747 24200810
    176970 4v8z:Bc (6.6) BS01 rna ? GO:0002181 ... P14120 24200810
    176971 4v8z:Bd (6.6) BS01 rna ? GO:0002181 ... P0C2H8 24200810
    176972 4v8z:Be (6.6) BS01 rna ? GO:0002181 ... P38061 24200810
    176973 4v8z:Bf (6.6) BS01 rna ? GO:0000027 ... P05744 24200810
    176974 4v8z:Bg (6.6) BS01 rna ? GO:0002181 ... P87262 24200810
    176975 4v8z:Bh (6.6) BS01 rna ? GO:0000463 ... P0CX85 24200810
    176976 4v8z:Bh (6.6) BS02 rna ? GO:0000463 ... P0CX85 24200810
    176977 4v8z:Bi (6.6) BS01 rna ? GO:0002181 ... P05745 24200810
    176978 4v8z:Bj (6.6) BS01 rna ? GO:0000448 ... P49166 24200810
    176979 4v8z:Bj (6.6) BS02 rna ? GO:0000448 ... P49166 24200810
    176980 4v8z:Bj (6.6) BS03 ZN ? GO:0000448 ... P49166 24200810
    176981 4v8z:Bk (6.6) BS01 rna ? GO:0002181 ... P49167 24200810
    176982 4v8z:Bl (6.6) BS01 rna ? GO:0002181 ... P04650 24200810
    176983 4v8z:Bl (6.6) BS02 rna ? GO:0002181 ... P04650 24200810
    176984 4v8z:Bm (6.6) BS01 rna ? GO:0000027 ... P0CH08 24200810
    176985 4v8z:Bm (6.6) BS02 ZN ? GO:0000027 ... P0CH08 24200810
    176986 4v8z:Bo (6.6) BS01 rna ? GO:0002181 ... P0CX27 24200810
    176987 4v8z:Bo (6.6) BS02 rna ? GO:0002181 ... P0CX27 24200810
    176988 4v8z:Bq (6.6) BS01 rna ? GO:0000027 ... P05317 24200810
    176989 4v90:AB (2.95) BS01 rna ? GO:0003735 ... P80371 23912278
    176990 4v90:AC (2.95) BS01 rna ? GO:0003676 ... P80372 23912278
    176991 4v90:AD (2.95) BS01 rna ? GO:0003723 ... P80373 23912278
    176992 4v90:AE (2.95) BS01 rna ? GO:0003723 ... Q5SHQ5 23912278
    176993 4v90:AF (2.95) BS01 rna ? GO:0003735 ... Q5SLP8 23912278
    176994 4v90:AG (2.95) BS01 rna ? GO:0000028 ... P17291 23912278
    176995 4v90:AG (2.95) BS02 rna ? GO:0000028 ... P17291 23912278
    176996 4v90:AG (2.95) BS03 rna ? GO:0000028 ... P17291 23912278
    176997 4v90:AH (2.95) BS01 rna N/A GO:0003735 ... N/A 23912278
    176998 4v90:AI (2.95) BS01 rna ? GO:0000049 ... P80374 23912278
    176999 4v90:AJ (2.95) BS01 rna ? GO:0000049 ... Q5SHN7 23912278
    177000 4v90:AK (2.95) BS01 rna ? GO:0003735 ... P80376 23912278
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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