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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176601 4v8w:F (17.5) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176602 4v8x:AB (3.35) BS01 rna ? GO:0003735 ... P80371 23945936
    176603 4v8x:AC (3.35) BS01 rna ? GO:0003676 ... P80372 23945936
    176604 4v8x:AD (3.35) BS01 rna ? GO:0003723 ... P80373 23945936
    176605 4v8x:AD (3.35) BS02 ZN ? GO:0003723 ... P80373 23945936
    176606 4v8x:AE (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 23945936
    176607 4v8x:AF (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 23945936
    176608 4v8x:AG (3.35) BS01 rna ? GO:0000028 ... P17291 23945936
    176609 4v8x:AG (3.35) BS02 rna ? GO:0000028 ... P17291 23945936
    176610 4v8x:AH (3.35) BS01 rna ? GO:0003735 ... P0DOY9 23945936
    176611 4v8x:AI (3.35) BS01 rna ? GO:0000049 ... P80374 23945936
    176612 4v8x:AJ (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 23945936
    176613 4v8x:AK (3.35) BS01 rna ? GO:0003735 ... P80376 23945936
    176614 4v8x:AL (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 23945936
    176615 4v8x:AL (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 23945936
    176616 4v8x:AM (3.35) BS01 rna ? GO:0000049 ... P80377 23945936
    176617 4v8x:AM (3.35) BS02 rna ? GO:0000049 ... P80377 23945936
    176618 4v8x:AM (3.35) BS03 rna ? GO:0000049 ... P80377 23945936
    176619 4v8x:AN (3.35) BS01 rna ? GO:0003735 ... P0DOY6 23945936
    176620 4v8x:AN (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 23945936
    176621 4v8x:AO (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 23945936
    176622 4v8x:AO (3.35) BS02 rna ? GO:0003735 ... Q5SJ76 23945936
    176623 4v8x:AP (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 23945936
    176624 4v8x:AQ (3.35) BS01 rna ? GO:0003735 ... P0DOY7 23945936
    176625 4v8x:AR (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 23945936
    176626 4v8x:AS (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 23945936
    176627 4v8x:AT (3.35) BS01 rna ? GO:0003723 ... P80380 23945936
    176628 4v8x:AY (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176629 4v8x:AY (3.35) BS02 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176630 4v8x:AY (3.35) BS03 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176631 4v8x:AZ (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176632 4v8x:B0 (3.35) BS01 rna ? GO:0003735 ... P60493 23945936
    176633 4v8x:B0 (3.35) BS02 rna ? GO:0003735 ... P60493 23945936
    176634 4v8x:B0 (3.35) BS03 rna ? GO:0003735 ... P60493 23945936
    176635 4v8x:B1 (3.35) BS01 rna ? GO:0003735 ... P60494 23945936
    176636 4v8x:B1 (3.35) BS02 rna ? GO:0003735 ... P60494 23945936
    176637 4v8x:B2 (3.35) BS01 rna ? GO:0003735 ... Q5SHP6 23945936
    176638 4v8x:B3 (3.35) BS01 rna ? GO:0003735 ... Q5SHQ6 23945936
    176639 4v8x:B3 (3.35) BS02 rna ? GO:0003735 ... Q5SHQ6 23945936
    176640 4v8x:B4 (3.35) BS01 rna ? GO:0003735 ... Q5SJE1 23945936
    176641 4v8x:B5 (3.35) BS01 rna ? GO:0003735 ... P80339 23945936
    176642 4v8x:B6 (3.35) BS01 rna ? GO:0000049 ... P35871 23945936
    176643 4v8x:B7 (3.35) BS01 rna ? GO:0003735 ... P80340 23945936
    176644 4v8x:B8 (3.35) BS01 rna ? GO:0003735 ... Q5SKU1 23945936
    176645 4v8x:B9 (3.35) BS01 rna ? GO:0003735 ... Q5SHR2 23945936
    176646 4v8x:BC (3.35) BS01 rna ? GO:0000049 ... Q5SLP7 23945936
    176647 4v8x:BD (3.35) BS01 rna ? GO:0002181 ... P60405 23945936
    176648 4v8x:BD (3.35) BS02 rna ? GO:0002181 ... P60405 23945936
    176649 4v8x:BE (3.35) BS01 rna ? GO:0003735 ... Q5SHN8 23945936
    176650 4v8x:BF (3.35) BS01 rna ? GO:0003735 ... Q5SHN9 23945936
    176651 4v8x:BG (3.35) BS01 rna ? GO:0000049 ... Q5SHQ0 23945936
    176652 4v8x:BG (3.35) BS02 rna ? GO:0000049 ... Q5SHQ0 23945936
    176653 4v8x:BG (3.35) BS03 rna ? GO:0000049 ... Q5SHQ0 23945936
    176654 4v8x:BH (3.35) BS01 rna ? GO:0002181 ... P0DOY8 23945936
    176655 4v8x:BI (3.35) BS01 rna ? GO:0003735 ... Q5SLQ1 23945936
    176656 4v8x:BN (3.35) BS01 rna ? GO:0003729 ... P60488 23945936
    176657 4v8x:BO (3.35) BS01 rna ? GO:0003735 ... Q5SHP8 23945936
    176658 4v8x:BP (3.35) BS01 rna ? GO:0003735 ... Q5SHQ7 23945936
    176659 4v8x:BQ (3.35) BS01 rna ? GO:0000049 ... P60489 23945936
    176660 4v8x:BQ (3.35) BS02 rna ? GO:0000049 ... P60489 23945936
    176661 4v8x:BR (3.35) BS01 rna ? GO:0003735 ... Q9Z9H5 23945936
    176662 4v8x:BS (3.35) BS01 rna ? GO:0003735 ... Q5SHQ4 23945936
    176663 4v8x:BS (3.35) BS02 rna ? GO:0003735 ... Q5SHQ4 23945936
    176664 4v8x:BT (3.35) BS01 rna ? GO:0003735 ... P60490 23945936
    176665 4v8x:BT (3.35) BS02 rna ? GO:0003735 ... P60490 23945936
    176666 4v8x:BU (3.35) BS01 rna ? GO:0000027 ... P60491 23945936
    176667 4v8x:BV (3.35) BS01 rna ? GO:0003723 ... P60492 23945936
    176668 4v8x:BW (3.35) BS01 rna ? GO:0003735 ... Q5SHP3 23945936
    176669 4v8x:BX (3.35) BS01 rna ? GO:0000027 ... Q5SHP0 23945936
    176670 4v8x:BY (3.35) BS01 rna ? GO:0003723 ... Q5SHP9 23945936
    176671 4v8x:BZ (3.35) BS01 rna ? GO:0003723 ... Q5SHZ1 23945936
    176672 4v8x:BZ (3.35) BS02 rna ? GO:0003723 ... Q5SHZ1 23945936
    176673 4v8x:BZ (3.35) BS03 rna ? GO:0003723 ... Q5SHZ1 23945936
    176674 4v8x:CB (3.35) BS01 rna ? GO:0003735 ... P80371 23945936
    176675 4v8x:CC (3.35) BS01 rna ? GO:0003676 ... P80372 23945936
    176676 4v8x:CD (3.35) BS01 rna ? GO:0003723 ... P80373 23945936
    176677 4v8x:CD (3.35) BS02 ZN ? GO:0003723 ... P80373 23945936
    176678 4v8x:CE (3.35) BS01 rna ? GO:0003723 ... Q5SHQ5 23945936
    176679 4v8x:CF (3.35) BS01 rna ? GO:0003735 ... Q5SLP8 23945936
    176680 4v8x:CG (3.35) BS01 rna ? GO:0000028 ... P17291 23945936
    176681 4v8x:CG (3.35) BS02 rna ? GO:0000028 ... P17291 23945936
    176682 4v8x:CH (3.35) BS01 rna ? GO:0003735 ... P0DOY9 23945936
    176683 4v8x:CI (3.35) BS01 rna ? GO:0000049 ... P80374 23945936
    176684 4v8x:CJ (3.35) BS01 rna ? GO:0000049 ... Q5SHN7 23945936
    176685 4v8x:CK (3.35) BS01 rna ? GO:0003735 ... P80376 23945936
    176686 4v8x:CL (3.35) BS01 rna ? GO:0000049 ... Q5SHN3 23945936
    176687 4v8x:CL (3.35) BS02 MG ? GO:0000049 ... Q5SHN3 23945936
    176688 4v8x:CM (3.35) BS01 rna ? GO:0000049 ... P80377 23945936
    176689 4v8x:CM (3.35) BS02 rna ? GO:0000049 ... P80377 23945936
    176690 4v8x:CM (3.35) BS03 rna ? GO:0000049 ... P80377 23945936
    176691 4v8x:CN (3.35) BS01 rna ? GO:0003735 ... P0DOY6 23945936
    176692 4v8x:CN (3.35) BS02 ZN ? GO:0003735 ... P0DOY6 23945936
    176693 4v8x:CO (3.35) BS01 rna ? GO:0003735 ... Q5SJ76 23945936
    176694 4v8x:CO (3.35) BS02 rna ? GO:0003735 ... Q5SJ76 23945936
    176695 4v8x:CP (3.35) BS01 rna ? GO:0003735 ... Q5SJH3 23945936
    176696 4v8x:CQ (3.35) BS01 rna ? GO:0003735 ... P0DOY7 23945936
    176697 4v8x:CR (3.35) BS01 rna ? GO:0003735 ... Q5SLQ0 23945936
    176698 4v8x:CS (3.35) BS01 rna ? GO:0000028 ... Q5SHP2 23945936
    176699 4v8x:CT (3.35) BS01 rna ? GO:0003723 ... P80380 23945936
    176700 4v8x:CY (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176701 4v8x:CY (3.35) BS02 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176702 4v8x:CY (3.35) BS03 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176703 4v8x:CZ (3.35) BS01 rna 3.1.-.- GO:0003723 ... P69348 23945936
    176704 4v8x:D0 (3.35) BS01 rna ? GO:0003735 ... P60493 23945936
    176705 4v8x:D0 (3.35) BS02 rna ? GO:0003735 ... P60493 23945936
    176706 4v8x:D0 (3.35) BS03 rna ? GO:0003735 ... P60493 23945936
    176707 4v8x:D1 (3.35) BS01 rna ? GO:0003735 ... P60494 23945936
    176708 4v8x:D2 (3.35) BS01 rna ? GO:0003735 ... Q5SHP6 23945936
    176709 4v8x:D3 (3.35) BS01 rna ? GO:0003735 ... Q5SHQ6 23945936
    176710 4v8x:D3 (3.35) BS02 rna ? GO:0003735 ... Q5SHQ6 23945936
    176711 4v8x:D4 (3.35) BS01 rna ? GO:0003735 ... Q5SJE1 23945936
    176712 4v8x:D5 (3.35) BS01 rna ? GO:0003735 ... P80339 23945936
    176713 4v8x:D6 (3.35) BS01 rna ? GO:0000049 ... P35871 23945936
    176714 4v8x:D7 (3.35) BS01 rna ? GO:0003735 ... P80340 23945936
    176715 4v8x:D8 (3.35) BS01 rna ? GO:0003735 ... Q5SKU1 23945936
    176716 4v8x:D9 (3.35) BS01 rna ? GO:0003735 ... Q5SHR2 23945936
    176717 4v8x:DC (3.35) BS01 rna ? GO:0000049 ... Q5SLP7 23945936
    176718 4v8x:DC (3.35) BS02 rna ? GO:0000049 ... Q5SLP7 23945936
    176719 4v8x:DD (3.35) BS01 rna ? GO:0002181 ... P60405 23945936
    176720 4v8x:DE (3.35) BS01 rna ? GO:0003735 ... Q5SHN8 23945936
    176721 4v8x:DF (3.35) BS01 rna ? GO:0003735 ... Q5SHN9 23945936
    176722 4v8x:DF (3.35) BS02 MG ? GO:0003735 ... Q5SHN9 23945936
    176723 4v8x:DG (3.35) BS01 rna ? GO:0000049 ... Q5SHQ0 23945936
    176724 4v8x:DG (3.35) BS02 rna ? GO:0000049 ... Q5SHQ0 23945936
    176725 4v8x:DG (3.35) BS03 rna ? GO:0000049 ... Q5SHQ0 23945936
    176726 4v8x:DH (3.35) BS01 rna ? GO:0002181 ... P0DOY8 23945936
    176727 4v8x:DI (3.35) BS01 rna ? GO:0003735 ... Q5SLQ1 23945936
    176728 4v8x:DI (3.35) BS02 rna ? GO:0003735 ... Q5SLQ1 23945936
    176729 4v8x:DN (3.35) BS01 rna ? GO:0003729 ... P60488 23945936
    176730 4v8x:DO (3.35) BS01 rna ? GO:0003735 ... Q5SHP8 23945936
    176731 4v8x:DO (3.35) BS02 rna ? GO:0003735 ... Q5SHP8 23945936
    176732 4v8x:DP (3.35) BS01 rna ? GO:0003735 ... Q5SHQ7 23945936
    176733 4v8x:DQ (3.35) BS01 rna ? GO:0000049 ... P60489 23945936
    176734 4v8x:DR (3.35) BS01 rna ? GO:0003735 ... Q9Z9H5 23945936
    176735 4v8x:DR (3.35) BS02 MG ? GO:0003735 ... Q9Z9H5 23945936
    176736 4v8x:DS (3.35) BS01 rna ? GO:0003735 ... Q5SHQ4 23945936
    176737 4v8x:DS (3.35) BS02 rna ? GO:0003735 ... Q5SHQ4 23945936
    176738 4v8x:DT (3.35) BS01 rna ? GO:0003735 ... P60490 23945936
    176739 4v8x:DT (3.35) BS02 rna ? GO:0003735 ... P60490 23945936
    176740 4v8x:DU (3.35) BS01 rna ? GO:0000027 ... P60491 23945936
    176741 4v8x:DV (3.35) BS01 rna ? GO:0003723 ... P60492 23945936
    176742 4v8x:DW (3.35) BS01 rna ? GO:0003735 ... Q5SHP3 23945936
    176743 4v8x:DX (3.35) BS01 rna ? GO:0000027 ... Q5SHP0 23945936
    176744 4v8x:DY (3.35) BS01 rna ? GO:0003723 ... Q5SHP9 23945936
    176745 4v8x:DZ (3.35) BS01 rna ? GO:0003723 ... Q5SHZ1 23945936
    176746 4v8x:DZ (3.35) BS02 rna ? GO:0003723 ... Q5SHZ1 23945936
    176747 4v8x:DZ (3.35) BS03 MG ? GO:0003723 ... Q5SHZ1 23945936
    176748 4v8y:A0 (4.3) BS01 rna ? GO:0000054 ... P39938 24200810
    176749 4v8y:A0 (4.3) BS02 ZN ? GO:0000054 ... P39938 24200810
    176750 4v8y:A1 (4.3) BS01 rna ? GO:0000028 ... P35997 24200810
    176751 4v8y:A2 (4.3) BS01 rna ? GO:0000028 ... Q3E7X9 24200810
    176752 4v8y:A3 (4.3) BS01 rna ? GO:0002181 ... P41057 24200810
    176753 4v8y:A3 (4.3) BS02 ZN ? GO:0002181 ... P41057 24200810
    176754 4v8y:A3 (4.3) BS03 OHX ? GO:0002181 ... P41057 24200810
    176755 4v8y:A3 (4.3) BS04 MG ? GO:0002181 ... P41057 24200810
    176756 4v8y:A3 (4.3) BS05 MG ? GO:0002181 ... P41057 24200810
    176757 4v8y:A4 (4.3) BS01 rna ? GO:0002181 ... P0CX33 24200810
    176758 4v8y:A5 (4.3) BS01 rna ? GO:0000028 ... P05759 24200810
    176759 4v8y:A5 (4.3) BS02 ZN ? GO:0000028 ... P05759 24200810
    176760 4v8y:A6 (4.3) BS01 rna ? GO:0001965 ... P38011 24200810
    176761 4v8y:A6 (4.3) BS02 OHX ? GO:0001965 ... P38011 24200810
    176762 4v8y:A7 (4.3) BS01 rna ? GO:0000723 ... P39015 24200810
    176763 4v8y:A7 (4.3) BS02 rna ? GO:0000723 ... P39015 24200810
    176764 4v8y:A7 (4.3) BS03 rna ? GO:0000723 ... P39015 24200810
    176765 4v8y:AA (4.3) BS01 rna ? GO:0000028 ... P32905 24200810
    176766 4v8y:AB (4.3) BS01 rna ? GO:0000462 ... P33442 24200810
    176767 4v8y:AB (4.3) BS02 rna ? GO:0000462 ... P33442 24200810
    176768 4v8y:AB (4.3) BS03 OHX ? GO:0000462 ... P33442 24200810
    176769 4v8y:AC (4.3) BS01 rna ? GO:0000054 ... P25443 24200810
    176770 4v8y:AC (4.3) BS02 OHX ? GO:0000054 ... P25443 24200810
    176771 4v8y:AD (4.3) BS01 rna ? GO:0000054 ... P05750 24200810
    176772 4v8y:AE (4.3) BS01 rna ? GO:0002181 ... P0CX35 24200810
    176773 4v8y:AF (4.3) BS01 rna ? GO:0000028 ... P26783 24200810
    176774 4v8y:AG (4.3) BS01 rna ? GO:0000462 ... P0CX37 24200810
    176775 4v8y:AH (4.3) BS01 rna ? GO:0002181 ... P26786 24200810
    176776 4v8y:AI (4.3) BS01 rna ? GO:0000462 ... P0CX39 24200810
    176777 4v8y:AI (4.3) BS02 rna ? GO:0000462 ... P0CX39 24200810
    176778 4v8y:AI (4.3) BS03 OHX ? GO:0000462 ... P0CX39 24200810
    176779 4v8y:AJ (4.3) BS01 rna ? GO:0000462 ... O13516 24200810
    176780 4v8y:AK (4.3) BS01 rna ? GO:0000054 ... Q08745 24200810
    176781 4v8y:AL (4.3) BS01 rna ? GO:0000028 ... P0CX47 24200810
    176782 4v8y:AL (4.3) BS02 OHX ? GO:0000028 ... P0CX47 24200810
    176783 4v8y:AL (4.3) BS03 MG ? GO:0000028 ... P0CX47 24200810
    176784 4v8y:AM (4.3) BS01 rna ? GO:0000028 ... P48589 24200810
    176785 4v8y:AN (4.3) BS01 rna ? GO:0000462 ... P05756 24200810
    176786 4v8y:AN (4.3) BS02 rna ? GO:0000462 ... P05756 24200810
    176787 4v8y:AN (4.3) BS03 OHX ? GO:0000462 ... P05756 24200810
    176788 4v8y:AO (4.3) BS01 rna ? GO:0000028 ... P06367 24200810
    176789 4v8y:AP (4.3) BS01 rna ? GO:0000028 ... Q01855 24200810
    176790 4v8y:AP (4.3) BS02 OHX ? GO:0000028 ... Q01855 24200810
    176791 4v8y:AQ (4.3) BS01 rna ? GO:0000462 ... P0CX51 24200810
    176792 4v8y:AR (4.3) BS01 rna ? GO:0000028 ... P02407 24200810
    176793 4v8y:AS (4.3) BS01 rna ? GO:0000054 ... P0CX55 24200810
    176794 4v8y:AS (4.3) BS02 MG ? GO:0000054 ... P0CX55 24200810
    176795 4v8y:AT (4.3) BS01 rna ? GO:0000028 ... P07280 24200810
    176796 4v8y:AU (4.3) BS01 rna ? GO:0000462 ... P38701 24200810
    176797 4v8y:AV (4.3) BS01 rna ? GO:0000447 ... P0C0V8 24200810
    176798 4v8y:AW (4.3) BS01 rna ? GO:0002181 ... P0C0W1 24200810
    176799 4v8y:AX (4.3) BS01 rna ? GO:0000462 ... P0CX29 24200810
    176800 4v8y:AY (4.3) BS01 rna ? GO:0000462 ... P0CX31 24200810
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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