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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176401 4v8t:L (8.1) BS02 rna ? GO:0002181 ... Q12690 23142985
    176402 4v8t:M (8.1) BS01 rna ? GO:0000027 ... P36105 23142985
    176403 4v8t:N (8.1) BS01 rna ? GO:0002181 ... P05748 23142985
    176404 4v8t:N (8.1) BS02 rna ? GO:0002181 ... P05748 23142985
    176405 4v8t:O (8.1) BS01 rna ? GO:0000470 ... P26784 23142985
    176406 4v8t:P (8.1) BS01 rna ? GO:0000448 ... P05740 23142985
    176407 4v8t:P (8.1) BS02 rna ? GO:0000448 ... P05740 23142985
    176408 4v8t:Q (8.1) BS01 rna ? GO:0002181 ... P0CX49 23142985
    176409 4v8t:R (8.1) BS01 rna ? GO:0002181 ... P0CX82 23142985
    176410 4v8t:S (8.1) BS01 rna ? GO:0002181 ... P0CX23 23142985
    176411 4v8t:S (8.1) BS02 rna ? GO:0002181 ... P0CX23 23142985
    176412 4v8t:T (8.1) BS01 rna ? GO:0002181 ... Q02753 23142985
    176413 4v8t:T (8.1) BS02 rna ? GO:0002181 ... Q02753 23142985
    176414 4v8t:U (8.1) BS01 rna ? GO:0002181 ... P05749 23142985
    176415 4v8t:V (8.1) BS01 rna ? GO:0002181 ... P0CX41 23142985
    176416 4v8t:W (8.1) BS01 rna ? GO:0002181 ... P04449 23142985
    176417 4v8t:X (8.1) BS01 rna ? GO:0000027 ... P04456 23142985
    176418 4v8t:X (8.1) BS02 rna ? GO:0000027 ... P04456 23142985
    176419 4v8t:Y (8.1) BS01 rna ? GO:0002181 ... P05743 23142985
    176420 4v8t:Y (8.1) BS02 rna ? GO:0002181 ... P05743 23142985
    176421 4v8t:Z (8.1) BS01 rna ? GO:0002181 ... P0C2H6 23142985
    176422 4v8t:a (8.1) BS01 rna ? GO:0002181 ... P02406 23142985
    176423 4v8t:b (8.1) BS01 rna ? GO:0002181 ... P05747 23142985
    176424 4v8t:c (8.1) BS01 rna ? GO:0002181 ... P14120 23142985
    176425 4v8t:d (8.1) BS01 rna ? GO:0002181 ... P0C2H8 23142985
    176426 4v8t:e (8.1) BS01 rna ? GO:0002181 ... P38061 23142985
    176427 4v8t:f (8.1) BS01 rna ? GO:0000027 ... P05744 23142985
    176428 4v8t:g (8.1) BS01 rna ? GO:0002181 ... P87262 23142985
    176429 4v8t:h (8.1) BS01 rna ? GO:0000463 ... P0CX84 23142985
    176430 4v8t:h (8.1) BS02 rna ? GO:0000463 ... P0CX84 23142985
    176431 4v8t:i (8.1) BS01 rna ? GO:0002181 ... P05745 23142985
    176432 4v8t:j (8.1) BS01 rna ? GO:0000448 ... P49166 23142985
    176433 4v8t:j (8.1) BS02 rna ? GO:0000448 ... P49166 23142985
    176434 4v8t:j (8.1) BS03 ZN ? GO:0000448 ... P49166 23142985
    176435 4v8t:k (8.1) BS01 rna ? GO:0002181 ... P49167 23142985
    176436 4v8t:l (8.1) BS01 rna ? GO:0002181 ... P04650 23142985
    176437 4v8t:l (8.1) BS02 rna ? GO:0002181 ... P04650 23142985
    176438 4v8t:m (8.1) BS01 rna ? GO:0000027 ... P0CH08 23142985
    176439 4v8t:m (8.1) BS02 ZN ? GO:0000027 ... P0CH08 23142985
    176440 4v8t:o (8.1) BS01 rna ? GO:0002181 ... P0CX27 23142985
    176441 4v8t:o (8.1) BS02 ZN ? GO:0002181 ... P0CX27 23142985
    176442 4v8t:p (8.1) BS01 rna ? GO:0002181 ... P0CX25 23142985
    176443 4v8t:p (8.1) BS02 ZN ? GO:0002181 ... P0CX25 23142985
    176444 4v8t:q (8.1) BS01 rna ? GO:0000027 ... P05317 23142985
    176445 4v8t:t (8.1) BS01 rna 3.-.-.- GO:0000055 ... Q03862 23142985
    176446 4v8u:AB (3.7) BS01 rna ? GO:0003735 ... P80371 23527033
    176447 4v8u:AC (3.7) BS01 rna ? GO:0003676 ... P80372 23527033
    176448 4v8u:AD (3.7) BS01 rna ? GO:0003723 ... P80373 23527033
    176449 4v8u:AD (3.7) BS02 ZN ? GO:0003723 ... P80373 23527033
    176450 4v8u:AE (3.7) BS01 rna ? GO:0003723 ... Q5SHQ5 23527033
    176451 4v8u:AF (3.7) BS01 rna ? GO:0003735 ... Q5SLP8 23527033
    176452 4v8u:AG (3.7) BS01 rna ? GO:0000028 ... P17291 23527033
    176453 4v8u:AG (3.7) BS02 rna ? GO:0000028 ... P17291 23527033
    176454 4v8u:AG (3.7) BS03 rna ? GO:0000028 ... P17291 23527033
    176455 4v8u:AH (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176456 4v8u:AI (3.7) BS01 rna ? GO:0000049 ... P80374 23527033
    176457 4v8u:AJ (3.7) BS01 rna ? GO:0000049 ... Q5SHN7 23527033
    176458 4v8u:AK (3.7) BS01 rna ? GO:0003735 ... P80376 23527033
    176459 4v8u:AL (3.7) BS01 rna ? GO:0000049 ... Q5SHN3 23527033
    176460 4v8u:AM (3.7) BS01 rna ? GO:0000049 ... P80377 23527033
    176461 4v8u:AM (3.7) BS02 rna ? GO:0000049 ... P80377 23527033
    176462 4v8u:AN (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176463 4v8u:AN (3.7) BS02 ZN N/A GO:0003735 ... N/A 23527033
    176464 4v8u:AO (3.7) BS01 rna ? GO:0003735 ... Q5SJ76 23527033
    176465 4v8u:AO (3.7) BS02 rna ? GO:0003735 ... Q5SJ76 23527033
    176466 4v8u:AP (3.7) BS01 rna ? GO:0003735 ... Q5SJH3 23527033
    176467 4v8u:AQ (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176468 4v8u:AR (3.7) BS01 rna ? GO:0003735 ... Q5SLQ0 23527033
    176469 4v8u:AS (3.7) BS01 rna ? GO:0000028 ... Q5SHP2 23527033
    176470 4v8u:AT (3.7) BS01 rna ? GO:0003723 ... P80380 23527033
    176471 4v8u:AY (3.7) BS01 rna ? GO:0003746 ... Q5SHN5 23527033
    176472 4v8u:AY (3.7) BS02 rna ? GO:0003746 ... Q5SHN5 23527033
    176473 4v8u:AY (3.7) BS03 rna ? GO:0003746 ... Q5SHN5 23527033
    176474 4v8u:AY (3.7) BS04 FUA ? GO:0003746 ... Q5SHN5 23527033
    176475 4v8u:AY (3.7) BS05 GDP ? GO:0003746 ... Q5SHN5 23527033
    176476 4v8u:B0 (3.7) BS01 rna ? GO:0003735 ... P60493 23527033
    176477 4v8u:B0 (3.7) BS02 rna ? GO:0003735 ... P60493 23527033
    176478 4v8u:B0 (3.7) BS03 rna ? GO:0003735 ... P60493 23527033
    176479 4v8u:B1 (3.7) BS01 rna ? GO:0003735 ... P60494 23527033
    176480 4v8u:B2 (3.7) BS01 rna ? GO:0003735 ... Q5SHP6 23527033
    176481 4v8u:B3 (3.7) BS01 rna ? GO:0003735 ... Q5SHQ6 23527033
    176482 4v8u:B3 (3.7) BS02 rna ? GO:0003735 ... Q5SHQ6 23527033
    176483 4v8u:B4 (3.7) BS01 rna ? GO:0003735 ... Q5SJE1 23527033
    176484 4v8u:B5 (3.7) BS01 rna ? GO:0003735 ... P80339 23527033
    176485 4v8u:B6 (3.7) BS01 rna ? GO:0000049 ... P35871 23527033
    176486 4v8u:B7 (3.7) BS01 rna ? GO:0003735 ... P80340 23527033
    176487 4v8u:B8 (3.7) BS01 rna ? GO:0003735 ... Q5SKU1 23527033
    176488 4v8u:B9 (3.7) BS01 rna ? GO:0003735 ... Q5SHR2 23527033
    176489 4v8u:B9 (3.7) BS02 ZN ? GO:0003735 ... Q5SHR2 23527033
    176490 4v8u:BC (3.7) BS01 rna ? GO:0000049 ... Q5SLP7 23527033
    176491 4v8u:BC (3.7) BS02 rna ? GO:0000049 ... Q5SLP7 23527033
    176492 4v8u:BD (3.7) BS01 rna ? GO:0002181 ... P60405 23527033
    176493 4v8u:BE (3.7) BS01 rna ? GO:0003735 ... Q5SHN8 23527033
    176494 4v8u:BF (3.7) BS01 rna ? GO:0003735 ... Q5SHN9 23527033
    176495 4v8u:BG (3.7) BS01 rna ? GO:0000049 ... Q5SHQ0 23527033
    176496 4v8u:BG (3.7) BS02 rna ? GO:0000049 ... Q5SHQ0 23527033
    176497 4v8u:BG (3.7) BS03 rna ? GO:0000049 ... Q5SHQ0 23527033
    176498 4v8u:BH (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176499 4v8u:BN (3.7) BS01 rna ? GO:0003729 ... P60488 23527033
    176500 4v8u:BO (3.7) BS01 rna ? GO:0003735 ... Q5SHP8 23527033
    176501 4v8u:BO (3.7) BS02 rna ? GO:0003735 ... Q5SHP8 23527033
    176502 4v8u:BP (3.7) BS01 rna ? GO:0003735 ... Q5SHQ7 23527033
    176503 4v8u:BQ (3.7) BS01 rna ? GO:0000049 ... P60489 23527033
    176504 4v8u:BQ (3.7) BS02 rna ? GO:0000049 ... P60489 23527033
    176505 4v8u:BR (3.7) BS01 rna ? GO:0003735 ... Q9Z9H5 23527033
    176506 4v8u:BS (3.7) BS01 rna ? GO:0003735 ... Q5SHQ4 23527033
    176507 4v8u:BS (3.7) BS02 rna ? GO:0003735 ... Q5SHQ4 23527033
    176508 4v8u:BT (3.7) BS01 rna ? GO:0003735 ... P60490 23527033
    176509 4v8u:BT (3.7) BS02 rna ? GO:0003735 ... P60490 23527033
    176510 4v8u:BU (3.7) BS01 rna ? GO:0000027 ... P60491 23527033
    176511 4v8u:BV (3.7) BS01 rna ? GO:0003723 ... P60492 23527033
    176512 4v8u:BW (3.7) BS01 rna ? GO:0003735 ... Q5SHP3 23527033
    176513 4v8u:BX (3.7) BS01 rna ? GO:0000027 ... Q5SHP0 23527033
    176514 4v8u:BY (3.7) BS01 rna ? GO:0003723 ... Q5SHP9 23527033
    176515 4v8u:BZ (3.7) BS01 rna ? GO:0003723 ... Q5SHZ1 23527033
    176516 4v8u:BZ (3.7) BS02 rna ? GO:0003723 ... Q5SHZ1 23527033
    176517 4v8u:BZ (3.7) BS03 rna ? GO:0003723 ... Q5SHZ1 23527033
    176518 4v8u:CB (3.7) BS01 rna ? GO:0003735 ... P80371 23527033
    176519 4v8u:CC (3.7) BS01 rna ? GO:0003676 ... P80372 23527033
    176520 4v8u:CD (3.7) BS01 rna ? GO:0003723 ... P80373 23527033
    176521 4v8u:CE (3.7) BS01 rna ? GO:0003723 ... Q5SHQ5 23527033
    176522 4v8u:CF (3.7) BS01 rna ? GO:0003735 ... Q5SLP8 23527033
    176523 4v8u:CG (3.7) BS01 rna ? GO:0000028 ... P17291 23527033
    176524 4v8u:CG (3.7) BS02 rna ? GO:0000028 ... P17291 23527033
    176525 4v8u:CH (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176526 4v8u:CI (3.7) BS01 rna ? GO:0000049 ... P80374 23527033
    176527 4v8u:CI (3.7) BS02 rna ? GO:0000049 ... P80374 23527033
    176528 4v8u:CJ (3.7) BS01 rna ? GO:0000049 ... Q5SHN7 23527033
    176529 4v8u:CK (3.7) BS01 rna ? GO:0003735 ... P80376 23527033
    176530 4v8u:CL (3.7) BS01 rna ? GO:0000049 ... Q5SHN3 23527033
    176531 4v8u:CM (3.7) BS01 rna ? GO:0000049 ... P80377 23527033
    176532 4v8u:CM (3.7) BS02 rna ? GO:0000049 ... P80377 23527033
    176533 4v8u:CN (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176534 4v8u:CN (3.7) BS02 ZN N/A GO:0003735 ... N/A 23527033
    176535 4v8u:CO (3.7) BS01 rna ? GO:0003735 ... Q5SJ76 23527033
    176536 4v8u:CO (3.7) BS02 rna ? GO:0003735 ... Q5SJ76 23527033
    176537 4v8u:CP (3.7) BS01 rna ? GO:0003735 ... Q5SJH3 23527033
    176538 4v8u:CQ (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176539 4v8u:CR (3.7) BS01 rna ? GO:0003735 ... Q5SLQ0 23527033
    176540 4v8u:CS (3.7) BS01 rna ? GO:0000028 ... Q5SHP2 23527033
    176541 4v8u:CT (3.7) BS01 rna ? GO:0003723 ... P80380 23527033
    176542 4v8u:CY (3.7) BS01 rna ? GO:0003746 ... Q5SHN5 23527033
    176543 4v8u:CY (3.7) BS02 rna ? GO:0003746 ... Q5SHN5 23527033
    176544 4v8u:CY (3.7) BS03 rna ? GO:0003746 ... Q5SHN5 23527033
    176545 4v8u:CY (3.7) BS04 rna ? GO:0003746 ... Q5SHN5 23527033
    176546 4v8u:CY (3.7) BS05 FUA ? GO:0003746 ... Q5SHN5 23527033
    176547 4v8u:CY (3.7) BS06 GDP ? GO:0003746 ... Q5SHN5 23527033
    176548 4v8u:D0 (3.7) BS01 rna ? GO:0003735 ... P60493 23527033
    176549 4v8u:D0 (3.7) BS02 rna ? GO:0003735 ... P60493 23527033
    176550 4v8u:D0 (3.7) BS03 rna ? GO:0003735 ... P60493 23527033
    176551 4v8u:D1 (3.7) BS01 rna ? GO:0003735 ... P60494 23527033
    176552 4v8u:D2 (3.7) BS01 rna ? GO:0003735 ... Q5SHP6 23527033
    176553 4v8u:D3 (3.7) BS01 rna ? GO:0003735 ... Q5SHQ6 23527033
    176554 4v8u:D3 (3.7) BS02 rna ? GO:0003735 ... Q5SHQ6 23527033
    176555 4v8u:D4 (3.7) BS01 rna ? GO:0003735 ... Q5SJE1 23527033
    176556 4v8u:D5 (3.7) BS01 rna ? GO:0003735 ... P80339 23527033
    176557 4v8u:D6 (3.7) BS01 rna ? GO:0000049 ... P35871 23527033
    176558 4v8u:D7 (3.7) BS01 rna ? GO:0003735 ... P80340 23527033
    176559 4v8u:D8 (3.7) BS01 rna ? GO:0003735 ... Q5SKU1 23527033
    176560 4v8u:D9 (3.7) BS01 rna ? GO:0003735 ... Q5SHR2 23527033
    176561 4v8u:D9 (3.7) BS02 ZN ? GO:0003735 ... Q5SHR2 23527033
    176562 4v8u:DC (3.7) BS01 rna ? GO:0000049 ... Q5SLP7 23527033
    176563 4v8u:DC (3.7) BS02 rna ? GO:0000049 ... Q5SLP7 23527033
    176564 4v8u:DD (3.7) BS01 rna ? GO:0002181 ... P60405 23527033
    176565 4v8u:DE (3.7) BS01 rna ? GO:0003735 ... Q5SHN8 23527033
    176566 4v8u:DF (3.7) BS01 rna ? GO:0003735 ... Q5SHN9 23527033
    176567 4v8u:DG (3.7) BS01 rna ? GO:0000049 ... Q5SHQ0 23527033
    176568 4v8u:DG (3.7) BS02 rna ? GO:0000049 ... Q5SHQ0 23527033
    176569 4v8u:DG (3.7) BS03 rna ? GO:0000049 ... Q5SHQ0 23527033
    176570 4v8u:DH (3.7) BS01 rna N/A GO:0003735 ... N/A 23527033
    176571 4v8u:DN (3.7) BS01 rna ? GO:0003729 ... P60488 23527033
    176572 4v8u:DO (3.7) BS01 rna ? GO:0003735 ... Q5SHP8 23527033
    176573 4v8u:DO (3.7) BS02 rna ? GO:0003735 ... Q5SHP8 23527033
    176574 4v8u:DP (3.7) BS01 rna ? GO:0003735 ... Q5SHQ7 23527033
    176575 4v8u:DQ (3.7) BS01 rna ? GO:0000049 ... P60489 23527033
    176576 4v8u:DQ (3.7) BS02 rna ? GO:0000049 ... P60489 23527033
    176577 4v8u:DR (3.7) BS01 rna ? GO:0003735 ... Q9Z9H5 23527033
    176578 4v8u:DS (3.7) BS01 rna ? GO:0003735 ... Q5SHQ4 23527033
    176579 4v8u:DS (3.7) BS02 rna ? GO:0003735 ... Q5SHQ4 23527033
    176580 4v8u:DT (3.7) BS01 rna ? GO:0003735 ... P60490 23527033
    176581 4v8u:DT (3.7) BS02 rna ? GO:0003735 ... P60490 23527033
    176582 4v8u:DU (3.7) BS01 rna ? GO:0000027 ... P60491 23527033
    176583 4v8u:DV (3.7) BS01 rna ? GO:0003723 ... P60492 23527033
    176584 4v8u:DW (3.7) BS01 rna ? GO:0003735 ... Q5SHP3 23527033
    176585 4v8u:DX (3.7) BS01 rna ? GO:0000027 ... Q5SHP0 23527033
    176586 4v8u:DY (3.7) BS01 rna ? GO:0003723 ... Q5SHP9 23527033
    176587 4v8u:DZ (3.7) BS01 rna ? GO:0003723 ... Q5SHZ1 23527033
    176588 4v8u:DZ (3.7) BS02 rna ? GO:0003723 ... Q5SHZ1 23527033
    176589 4v8u:DZ (3.7) BS03 ZN ? GO:0003723 ... Q5SHZ1 23527033
    176590 4v8v:A (20.0) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176591 4v8v:B (20.0) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176592 4v8v:C (20.0) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176593 4v8v:D (20.0) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176594 4v8v:E (20.0) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176595 4v8v:F (20.0) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176596 4v8w:A (17.5) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176597 4v8w:B (17.5) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176598 4v8w:C (17.5) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176599 4v8w:D (17.5) BS01 FMN N/A GO:0004312 ... N/A 23746808
    176600 4v8w:E (17.5) BS01 FMN N/A GO:0004312 ... N/A 23746808
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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