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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176201 4v8p:GV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    176202 4v8p:GV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    176203 4v8p:GW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    176204 4v8p:GX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    176205 4v8p:GY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    176206 4v8p:GY (3.52) BS02 ZN ? GO:0003735 ... Q23G98 22052974
    176207 4v8p:HA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    176208 4v8p:HA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    176209 4v8p:HA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    176210 4v8p:HB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    176211 4v8p:HB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    176212 4v8p:HC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    176213 4v8p:HC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    176214 4v8p:HE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    176215 4v8p:HF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    176216 4v8p:HG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    176217 4v8p:HH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    176218 4v8p:HK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    176219 4v8p:HK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    176220 4v8p:HL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    176221 4v8p:HL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    176222 4v8p:HM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    176223 4v8p:HN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    176224 4v8p:HO (3.52) BS01 rna ? GO:0005840 ... P0DJ20 22052974
    176225 4v8p:HP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    176226 4v8p:HQ (3.52) BS01 rna ? GO:0002181 ... Q24F59 22052974
    176227 4v8p:HT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    176228 4v8p:HU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    176229 4v8p:HU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    176230 4v8p:HX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    176231 4v8p:HX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    176232 4v8q:A0 (3.1) BS01 rna ? GO:0003735 ... P60493 22422985
    176233 4v8q:A0 (3.1) BS02 rna ? GO:0003735 ... P60493 22422985
    176234 4v8q:A0 (3.1) BS03 rna ? GO:0003735 ... P60493 22422985
    176235 4v8q:A1 (3.1) BS01 rna ? GO:0003735 ... P60494 22422985
    176236 4v8q:A2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22422985
    176237 4v8q:A3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22422985
    176238 4v8q:A3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22422985
    176239 4v8q:A5 (3.1) BS01 rna ? GO:0003735 ... P80339 22422985
    176240 4v8q:A6 (3.1) BS01 rna ? GO:0000049 ... P35871 22422985
    176241 4v8q:A6 (3.1) BS02 rna ? GO:0000049 ... P35871 22422985
    176242 4v8q:A7 (3.1) BS01 rna ? GO:0003735 ... P80340 22422985
    176243 4v8q:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22422985
    176244 4v8q:A9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 22422985
    176245 4v8q:A9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 22422985
    176246 4v8q:AC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 22422985
    176247 4v8q:AC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 22422985
    176248 4v8q:AD (3.1) BS01 rna ? GO:0002181 ... P60405 22422985
    176249 4v8q:AE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22422985
    176250 4v8q:AF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22422985
    176251 4v8q:AG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22422985
    176252 4v8q:AG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22422985
    176253 4v8q:AG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 22422985
    176254 4v8q:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    176255 4v8q:AN (3.1) BS01 rna ? GO:0003729 ... P60488 22422985
    176256 4v8q:AO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22422985
    176257 4v8q:AO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22422985
    176258 4v8q:AP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22422985
    176259 4v8q:AQ (3.1) BS01 rna ? GO:0000049 ... P60489 22422985
    176260 4v8q:AQ (3.1) BS02 rna ? GO:0000049 ... P60489 22422985
    176261 4v8q:AR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22422985
    176262 4v8q:AS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22422985
    176263 4v8q:AS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22422985
    176264 4v8q:AT (3.1) BS01 rna ? GO:0003735 ... P60490 22422985
    176265 4v8q:AT (3.1) BS02 rna ? GO:0003735 ... P60490 22422985
    176266 4v8q:AU (3.1) BS01 rna ? GO:0000027 ... P60491 22422985
    176267 4v8q:AV (3.1) BS01 rna ? GO:0003723 ... P60492 22422985
    176268 4v8q:AW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22422985
    176269 4v8q:AX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22422985
    176270 4v8q:AY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22422985
    176271 4v8q:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 22422985
    176272 4v8q:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 22422985
    176273 4v8q:B2 (3.1) BS01 rna ? GO:0003723 ... Q8RR57 22422985
    176274 4v8q:B2 (3.1) BS02 rna ? GO:0003723 ... Q8RR57 22422985
    176275 4v8q:BB (3.1) BS01 rna ? GO:0003735 ... P80371 22422985
    176276 4v8q:BC (3.1) BS01 rna ? GO:0003676 ... P80372 22422985
    176277 4v8q:BD (3.1) BS01 rna ? GO:0003723 ... P80373 22422985
    176278 4v8q:BD (3.1) BS02 ZN ? GO:0003723 ... P80373 22422985
    176279 4v8q:BE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22422985
    176280 4v8q:BF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22422985
    176281 4v8q:BG (3.1) BS01 rna ? GO:0000028 ... P17291 22422985
    176282 4v8q:BG (3.1) BS02 rna ? GO:0000028 ... P17291 22422985
    176283 4v8q:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    176284 4v8q:BI (3.1) BS01 rna ? GO:0000049 ... P80374 22422985
    176285 4v8q:BJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22422985
    176286 4v8q:BK (3.1) BS01 rna ? GO:0003735 ... P80376 22422985
    176287 4v8q:BL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22422985
    176288 4v8q:BL (3.1) BS02 rna ? GO:0000049 ... Q5SHN3 22422985
    176289 4v8q:BM (3.1) BS01 rna ? GO:0000049 ... P80377 22422985
    176290 4v8q:BM (3.1) BS02 rna ? GO:0000049 ... P80377 22422985
    176291 4v8q:BM (3.1) BS03 rna ? GO:0000049 ... P80377 22422985
    176292 4v8q:BN (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    176293 4v8q:BN (3.1) BS02 ZN N/A GO:0003735 ... N/A 22422985
    176294 4v8q:BO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22422985
    176295 4v8q:BO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22422985
    176296 4v8q:BP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22422985
    176297 4v8q:BQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22422985
    176298 4v8q:BR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22422985
    176299 4v8q:BS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22422985
    176300 4v8q:BT (3.1) BS01 rna ? GO:0003723 ... P80380 22422985
    176301 4v8q:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 22422985
    176302 4v8q:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 22422985
    176303 4v8q:BZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 22422985
    176304 4v8q:BZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 22422985
    176305 4v8q:BZ (3.1) BS05 GDP ? GO:0003723 ... Q5SHN6 22422985
    176306 4v8r:AA (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    176307 4v8r:AA (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    176308 4v8r:AB (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    176309 4v8r:AB (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    176310 4v8r:AB (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    176311 4v8r:AD (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    176312 4v8r:AD (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    176313 4v8r:AE (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    176314 4v8r:AE (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    176315 4v8r:AH (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    176316 4v8r:AH (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    176317 4v8r:AQ (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    176318 4v8r:AQ (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    176319 4v8r:AZ (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    176320 4v8r:AZ (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    176321 4v8r:Aa (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    176322 4v8r:Aa (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    176323 4v8r:Ab (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    176324 4v8r:Ab (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    176325 4v8r:Ab (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    176326 4v8r:Ad (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    176327 4v8r:Ad (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    176328 4v8r:Ae (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    176329 4v8r:Ae (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    176330 4v8r:Ah (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    176331 4v8r:Ah (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    176332 4v8r:Aq (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    176333 4v8r:Aq (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    176334 4v8r:Az (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    176335 4v8r:Az (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    176336 4v8r:BA (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    176337 4v8r:BA (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    176338 4v8r:BB (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    176339 4v8r:BB (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    176340 4v8r:BB (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    176341 4v8r:BD (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    176342 4v8r:BD (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    176343 4v8r:BE (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    176344 4v8r:BE (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    176345 4v8r:BH (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    176346 4v8r:BH (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    176347 4v8r:BQ (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    176348 4v8r:BQ (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    176349 4v8r:BZ (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    176350 4v8r:BZ (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    176351 4v8r:Ba (3.8) BS01 ADP ? GO:0005515 ... P12612 23478063
    176352 4v8r:Ba (3.8) BS02 BEF ? GO:0005515 ... P12612 23478063
    176353 4v8r:Bb (3.8) BS01 ADP ? GO:0005515 ... P39076 23478063
    176354 4v8r:Bb (3.8) BS02 BEF ? GO:0005515 ... P39076 23478063
    176355 4v8r:Bb (3.8) BS03 MG ? GO:0005515 ... P39076 23478063
    176356 4v8r:Bd (3.8) BS01 ADP ? GO:0005524 ... P39078 23478063
    176357 4v8r:Bd (3.8) BS02 BEF ? GO:0005524 ... P39078 23478063
    176358 4v8r:Be (3.8) BS01 ADP ? GO:0005524 ... P40413 23478063
    176359 4v8r:Be (3.8) BS02 BEF ? GO:0005524 ... P40413 23478063
    176360 4v8r:Bh (3.8) BS01 ADP ? GO:0005524 ... P42943 23478063
    176361 4v8r:Bh (3.8) BS02 BEF ? GO:0005524 ... P42943 23478063
    176362 4v8r:Bq (3.8) BS01 ADP ? GO:0005524 ... P47079 23478063
    176363 4v8r:Bq (3.8) BS02 BEF ? GO:0005524 ... P47079 23478063
    176364 4v8r:Bz (3.8) BS01 ADP ? GO:0005524 ... P39079 23478063
    176365 4v8r:Bz (3.8) BS02 BEF ? GO:0005524 ... P39079 23478063
    176366 4v8s:AO (4.323) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB63 22848102
    176367 4v8s:AR (4.323) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB55 22848102
    176368 4v8s:AS (4.323) BS01 SF4 2.7.7.6 GO:0000428 ... B8YB56 22848102
    176369 4v8s:AW (4.323) BS01 dna 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176370 4v8s:AW (4.323) BS02 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176371 4v8s:AW (4.323) BS03 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176372 4v8s:AW (4.323) BS04 MG 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176373 4v8s:AX (4.323) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB64 22848102
    176374 4v8s:AY (4.323) BS01 dna 2.7.7.6 GO:0000428 ... B8YB54 22848102
    176375 4v8s:BA (4.323) BS01 dna 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176376 4v8s:BA (4.323) BS02 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176377 4v8s:BA (4.323) BS03 ZN 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176378 4v8s:BA (4.323) BS04 MG 2.7.7.6 GO:0000287 ... B8YB53 22848102
    176379 4v8s:BB (4.323) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB55 22848102
    176380 4v8s:BC (4.323) BS01 dna 2.7.7.6 GO:0000428 ... B8YB54 22848102
    176381 4v8s:BD (4.323) BS01 SF4 2.7.7.6 GO:0000428 ... B8YB56 22848102
    176382 4v8s:BN (4.323) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB63 22848102
    176383 4v8s:BP (4.323) BS01 ZN 2.7.7.6 GO:0000428 ... B8YB64 22848102
    176384 4v8t:A (8.1) BS01 rna ? GO:0002181 ... P0CX45 23142985
    176385 4v8t:B (8.1) BS01 rna ? GO:0000027 ... P14126 23142985
    176386 4v8t:C (8.1) BS01 rna ? GO:0002181 ... P10664 23142985
    176387 4v8t:C (8.1) BS02 rna ? GO:0002181 ... P10664 23142985
    176388 4v8t:D (8.1) BS01 rna ? GO:0000027 ... P26321 23142985
    176389 4v8t:D (8.1) BS02 rna ? GO:0000027 ... P26321 23142985
    176390 4v8t:E (8.1) BS01 rna ? GO:0000027 ... Q02326 23142985
    176391 4v8t:F (8.1) BS01 rna ? GO:0000463 ... P05737 23142985
    176392 4v8t:F (8.1) BS02 rna ? GO:0000463 ... P05737 23142985
    176393 4v8t:G (8.1) BS01 rna ? GO:0000470 ... P17076 23142985
    176394 4v8t:G (8.1) BS02 rna ? GO:0000470 ... P17076 23142985
    176395 4v8t:H (8.1) BS01 rna ? GO:0002181 ... P05738 23142985
    176396 4v8t:I (8.1) BS01 rna ? GO:0000027 ... P41805 23142985
    176397 4v8t:I (8.1) BS02 rna ? GO:0000027 ... P41805 23142985
    176398 4v8t:J (8.1) BS01 rna ? GO:0000027 ... P0C0W9 23142985
    176399 4v8t:J (8.1) BS02 rna ? GO:0000027 ... P0C0W9 23142985
    176400 4v8t:L (8.1) BS01 rna ? GO:0002181 ... Q12690 23142985
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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