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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    176001 4v8p:AT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    176002 4v8p:AU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    176003 4v8p:AU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    176004 4v8p:AX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    176005 4v8p:AX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    176006 4v8p:BA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    176007 4v8p:BB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    176008 4v8p:BC (3.52) BS01 rna ? GO:0003723 ... P0DJ55 22052974
    176009 4v8p:BC (3.52) BS02 rna ? GO:0003723 ... P0DJ55 22052974
    176010 4v8p:BD (3.52) BS01 rna ? GO:0003723 ... P24119 22052974
    176011 4v8p:BD (3.52) BS02 rna ? GO:0003723 ... P24119 22052974
    176012 4v8p:BE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    176013 4v8p:BF (3.52) BS01 rna ? GO:0000470 ... P0DJ14 22052974
    176014 4v8p:BF (3.52) BS02 rna ? GO:0000470 ... P0DJ14 22052974
    176015 4v8p:BH (3.52) BS01 rna ? GO:0000027 ... Q235M8 22052974
    176016 4v8p:BH (3.52) BS02 rna ? GO:0000027 ... Q235M8 22052974
    176017 4v8p:BI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    176018 4v8p:BJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    176019 4v8p:BK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    176020 4v8p:BL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    176021 4v8p:BL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    176022 4v8p:BM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    176023 4v8p:BM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    176024 4v8p:BN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    176025 4v8p:BO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    176026 4v8p:BO (3.52) BS02 rna ? GO:0003723 ... P0DJ60 22052974
    176027 4v8p:BP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    176028 4v8p:BP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    176029 4v8p:BQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    176030 4v8p:BQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    176031 4v8p:BR (3.52) BS01 rna ? GO:0000027 ... P0DJ57 22052974
    176032 4v8p:BR (3.52) BS02 rna ? GO:0000027 ... P0DJ57 22052974
    176033 4v8p:BS (3.52) BS01 rna ? GO:0002181 ... Q23F79 22052974
    176034 4v8p:BS (3.52) BS02 rna ? GO:0002181 ... Q23F79 22052974
    176035 4v8p:BT (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    176036 4v8p:BU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    176037 4v8p:BU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    176038 4v8p:BV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    176039 4v8p:BV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    176040 4v8p:BW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    176041 4v8p:BX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    176042 4v8p:BY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    176043 4v8p:BY (3.52) BS02 ZN ? GO:0003735 ... Q23G98 22052974
    176044 4v8p:CA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    176045 4v8p:CB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    176046 4v8p:CC (3.52) BS01 rna ? GO:0003723 ... P0DJ55 22052974
    176047 4v8p:CC (3.52) BS02 rna ? GO:0003723 ... P0DJ55 22052974
    176048 4v8p:CD (3.52) BS01 rna ? GO:0003723 ... P24119 22052974
    176049 4v8p:CD (3.52) BS02 rna ? GO:0003723 ... P24119 22052974
    176050 4v8p:CE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    176051 4v8p:CF (3.52) BS01 rna ? GO:0000470 ... P0DJ14 22052974
    176052 4v8p:CF (3.52) BS02 rna ? GO:0000470 ... P0DJ14 22052974
    176053 4v8p:CH (3.52) BS01 rna ? GO:0000027 ... Q235M8 22052974
    176054 4v8p:CH (3.52) BS02 rna ? GO:0000027 ... Q235M8 22052974
    176055 4v8p:CI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    176056 4v8p:CJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    176057 4v8p:CK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    176058 4v8p:CL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    176059 4v8p:CL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    176060 4v8p:CM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    176061 4v8p:CM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    176062 4v8p:CN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    176063 4v8p:CO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    176064 4v8p:CP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    176065 4v8p:CP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    176066 4v8p:CQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    176067 4v8p:CQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    176068 4v8p:CR (3.52) BS01 rna ? GO:0000027 ... P0DJ57 22052974
    176069 4v8p:CR (3.52) BS02 rna ? GO:0000027 ... P0DJ57 22052974
    176070 4v8p:CS (3.52) BS01 rna ? GO:0002181 ... Q23F79 22052974
    176071 4v8p:CS (3.52) BS02 rna ? GO:0002181 ... Q23F79 22052974
    176072 4v8p:CT (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    176073 4v8p:CU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    176074 4v8p:CU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    176075 4v8p:CV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    176076 4v8p:CV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    176077 4v8p:CW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    176078 4v8p:CX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    176079 4v8p:CY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    176080 4v8p:CY (3.52) BS02 ZN ? GO:0003735 ... Q23G98 22052974
    176081 4v8p:DA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    176082 4v8p:DA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    176083 4v8p:DA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    176084 4v8p:DB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    176085 4v8p:DB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    176086 4v8p:DC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    176087 4v8p:DC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    176088 4v8p:DE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    176089 4v8p:DF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    176090 4v8p:DG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    176091 4v8p:DH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    176092 4v8p:DK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    176093 4v8p:DK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    176094 4v8p:DL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    176095 4v8p:DL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    176096 4v8p:DM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    176097 4v8p:DN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    176098 4v8p:DO (3.52) BS01 rna ? GO:0005840 ... P0DJ20 22052974
    176099 4v8p:DP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    176100 4v8p:DQ (3.52) BS01 rna ? GO:0002181 ... Q24F59 22052974
    176101 4v8p:DT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    176102 4v8p:DU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    176103 4v8p:DU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    176104 4v8p:DX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    176105 4v8p:DX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    176106 4v8p:EA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    176107 4v8p:EB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    176108 4v8p:EC (3.52) BS01 rna ? GO:0003723 ... P0DJ55 22052974
    176109 4v8p:EC (3.52) BS02 rna ? GO:0003723 ... P0DJ55 22052974
    176110 4v8p:ED (3.52) BS01 rna ? GO:0003723 ... P24119 22052974
    176111 4v8p:ED (3.52) BS02 rna ? GO:0003723 ... P24119 22052974
    176112 4v8p:EE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    176113 4v8p:EF (3.52) BS01 rna ? GO:0000470 ... P0DJ14 22052974
    176114 4v8p:EF (3.52) BS02 rna ? GO:0000470 ... P0DJ14 22052974
    176115 4v8p:EH (3.52) BS01 rna ? GO:0000027 ... Q235M8 22052974
    176116 4v8p:EH (3.52) BS02 rna ? GO:0000027 ... Q235M8 22052974
    176117 4v8p:EI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    176118 4v8p:EJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    176119 4v8p:EK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    176120 4v8p:EL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    176121 4v8p:EL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    176122 4v8p:EM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    176123 4v8p:EM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    176124 4v8p:EN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    176125 4v8p:EO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    176126 4v8p:EP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    176127 4v8p:EP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    176128 4v8p:EQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    176129 4v8p:EQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    176130 4v8p:ER (3.52) BS01 rna ? GO:0000027 ... P0DJ57 22052974
    176131 4v8p:ER (3.52) BS02 rna ? GO:0000027 ... P0DJ57 22052974
    176132 4v8p:ES (3.52) BS01 rna ? GO:0002181 ... Q23F79 22052974
    176133 4v8p:ES (3.52) BS02 rna ? GO:0002181 ... Q23F79 22052974
    176134 4v8p:ET (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    176135 4v8p:EU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    176136 4v8p:EU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    176137 4v8p:EV (3.52) BS01 rna ? GO:0000463 ... P0DJ13 22052974
    176138 4v8p:EV (3.52) BS02 rna ? GO:0000463 ... P0DJ13 22052974
    176139 4v8p:EW (3.52) BS01 rna ? GO:0002181 ... Q22DH9 22052974
    176140 4v8p:EX (3.52) BS01 rna ? GO:0003735 ... Q236T0 22052974
    176141 4v8p:EY (3.52) BS01 rna ? GO:0003735 ... Q23G98 22052974
    176142 4v8p:EY (3.52) BS02 rna ? GO:0003735 ... Q23G98 22052974
    176143 4v8p:EY (3.52) BS03 ZN ? GO:0003735 ... Q23G98 22052974
    176144 4v8p:FA (3.52) BS01 rna ? GO:0003723 ... P0DJ24 22052974
    176145 4v8p:FA (3.52) BS02 rna ? GO:0003723 ... P0DJ24 22052974
    176146 4v8p:FA (3.52) BS03 ZN ? GO:0003723 ... P0DJ24 22052974
    176147 4v8p:FB (3.52) BS01 rna ? GO:0003735 ... P0DJ61 22052974
    176148 4v8p:FB (3.52) BS02 rna ? GO:0003735 ... P0DJ61 22052974
    176149 4v8p:FC (3.52) BS01 rna ? GO:0003735 ... Q22X38 22052974
    176150 4v8p:FC (3.52) BS02 ZN ? GO:0003735 ... Q22X38 22052974
    176151 4v8p:FE (3.52) BS01 rna ? GO:0000027 ... P0DJ56 22052974
    176152 4v8p:FF (3.52) BS01 rna ? GO:0003723 ... Q24C27 22052974
    176153 4v8p:FG (3.52) BS01 rna ? GO:0003723 ... P0DJ59 22052974
    176154 4v8p:FH (3.52) BS01 rna ? GO:0000049 ... P0DJ22 22052974
    176155 4v8p:FK (3.52) BS01 rna ? GO:0003735 ... P0DJ25 22052974
    176156 4v8p:FK (3.52) BS02 ZN ? GO:0003735 ... P0DJ25 22052974
    176157 4v8p:FL (3.52) BS01 rna ? GO:0003735 ... P0DJ23 22052974
    176158 4v8p:FL (3.52) BS02 ZN ? GO:0003735 ... P0DJ23 22052974
    176159 4v8p:FM (3.52) BS01 rna ? GO:0002181 ... Q23BV5 22052974
    176160 4v8p:FN (3.52) BS01 rna ? GO:0003735 ... P0DJ19 22052974
    176161 4v8p:FN (3.52) BS02 rna ? GO:0003735 ... P0DJ19 22052974
    176162 4v8p:FO (3.52) BS01 rna ? GO:0005840 ... P0DJ20 22052974
    176163 4v8p:FP (3.52) BS01 rna ? GO:0003735 ... Q22SV3 22052974
    176164 4v8p:FQ (3.52) BS01 rna ? GO:0002181 ... Q24F59 22052974
    176165 4v8p:FT (3.52) BS01 rna ? GO:0002181 ... P0DJ21 22052974
    176166 4v8p:FU (3.52) BS01 rna ? GO:0003723 ... P0DJ58 22052974
    176167 4v8p:FU (3.52) BS02 rna ? GO:0003723 ... P0DJ58 22052974
    176168 4v8p:FX (3.52) BS01 rna ? GO:0003735 ... P0DJ18 22052974
    176169 4v8p:FX (3.52) BS02 rna ? GO:0003735 ... P0DJ18 22052974
    176170 4v8p:GA (3.52) BS01 rna ? GO:0002181 ... P0DJ52 22052974
    176171 4v8p:GB (3.52) BS01 rna ? GO:0003723 ... O96774 22052974
    176172 4v8p:GC (3.52) BS01 rna ? GO:0003723 ... P0DJ55 22052974
    176173 4v8p:GC (3.52) BS02 rna ? GO:0003723 ... P0DJ55 22052974
    176174 4v8p:GD (3.52) BS01 rna ? GO:0003723 ... P24119 22052974
    176175 4v8p:GD (3.52) BS02 rna ? GO:0003723 ... P24119 22052974
    176176 4v8p:GE (3.52) BS01 rna ? GO:0002181 ... Q22AX5 22052974
    176177 4v8p:GF (3.52) BS01 rna ? GO:0000470 ... P0DJ14 22052974
    176178 4v8p:GF (3.52) BS02 rna ? GO:0000470 ... P0DJ14 22052974
    176179 4v8p:GH (3.52) BS01 rna ? GO:0000027 ... Q235M8 22052974
    176180 4v8p:GH (3.52) BS02 rna ? GO:0000027 ... Q235M8 22052974
    176181 4v8p:GI (3.52) BS01 rna ? GO:0003729 ... P0DJ15 22052974
    176182 4v8p:GJ (3.52) BS01 rna ? GO:0003735 ... P0DJ53 22052974
    176183 4v8p:GK (3.52) BS01 rna ? GO:0003735 ... Q00454 22052974
    176184 4v8p:GL (3.52) BS01 rna ? GO:0002181 ... Q22A30 22052974
    176185 4v8p:GL (3.52) BS02 rna ? GO:0002181 ... Q22A30 22052974
    176186 4v8p:GM (3.52) BS01 rna ? GO:0000027 ... Q231U7 22052974
    176187 4v8p:GM (3.52) BS02 rna ? GO:0000027 ... Q231U7 22052974
    176188 4v8p:GN (3.52) BS01 rna ? GO:0003723 ... P0DJ17 22052974
    176189 4v8p:GO (3.52) BS01 rna ? GO:0003723 ... P0DJ60 22052974
    176190 4v8p:GP (3.52) BS01 rna ? GO:0003735 ... Q23TC8 22052974
    176191 4v8p:GP (3.52) BS02 rna ? GO:0003735 ... Q23TC8 22052974
    176192 4v8p:GQ (3.52) BS01 rna ? GO:0002181 ... P0DJ16 22052974
    176193 4v8p:GQ (3.52) BS02 rna ? GO:0002181 ... P0DJ16 22052974
    176194 4v8p:GR (3.52) BS01 rna ? GO:0000027 ... P0DJ57 22052974
    176195 4v8p:GR (3.52) BS02 rna ? GO:0000027 ... P0DJ57 22052974
    176196 4v8p:GS (3.52) BS01 rna ? GO:0002181 ... Q23F79 22052974
    176197 4v8p:GS (3.52) BS02 rna ? GO:0002181 ... Q23F79 22052974
    176198 4v8p:GT (3.52) BS01 rna ? GO:0002181 ... P0DJ54 22052974
    176199 4v8p:GU (3.52) BS01 rna ? GO:0000463 ... P0DJ51 22052974
    176200 4v8p:GU (3.52) BS02 rna ? GO:0000463 ... P0DJ51 22052974
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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