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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175601 4v8k:BU (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175602 4v8k:BU (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175603 4v8k:BV (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175604 4v8k:BV (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175605 4v8k:BV (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175606 4v8k:BW (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175607 4v8k:BW (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175608 4v8k:BW (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175609 4v8k:BW (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175610 4v8k:BW (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175611 4v8k:BW (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    175612 4v8k:BX (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175613 4v8k:BX (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175614 4v8k:BX (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175615 4v8k:BY (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175616 4v8k:BY (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175617 4v8k:BY (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175618 4v8k:BY (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175619 4v8k:BY (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175620 4v8k:BY (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    175621 4v8k:BZ (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175622 4v8k:BZ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175623 4v8k:BZ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175624 4v8l:A (7.5) BS01 FMN ? GO:0004312 ... A0R1H7 23291528
    175625 4v8l:B (7.5) BS01 FMN ? GO:0004312 ... A0R1H7 23291528
    175626 4v8l:C (7.5) BS01 FMN ? GO:0004312 ... A0R1H7 23291528
    175627 4v8l:D (7.5) BS01 FMN ? GO:0004312 ... A0R1H7 23291528
    175628 4v8l:E (7.5) BS01 FMN ? GO:0004312 ... A0R1H7 23291528
    175629 4v8l:F (7.5) BS01 FMN ? GO:0004312 ... A0R1H7 23291528
    175630 4v8m:A0 (5.57) BS01 rna ? GO:0003729 ... Q38BK6 23395961
    175631 4v8m:A1 (5.57) BS01 rna ? GO:0003723 ... Q386F2 23395961
    175632 4v8m:A2 (5.57) BS01 rna ? GO:0000028 ... Q385D9 23395961
    175633 4v8m:A2 (5.57) BS02 rna ? GO:0000028 ... Q385D9 23395961
    175634 4v8m:A3 (5.57) BS01 rna ? GO:0001558 ... Q38CL9 23395961
    175635 4v8m:A4 (5.57) BS01 rna ? GO:0003735 ... Q38FD9 23395961
    175636 4v8m:A5 (5.57) BS01 rna ? GO:0000462 ... Q57YL6 23395961
    175637 4v8m:A5 (5.57) BS02 rna ? GO:0000462 ... Q57YL6 23395961
    175638 4v8m:A5 (5.57) BS03 rna ? GO:0000462 ... Q57YL6 23395961
    175639 4v8m:A6 (5.57) BS01 rna ? GO:0003723 ... Q57VP3 23395961
    175640 4v8m:A7 (5.57) BS01 rna ? GO:0005080 ... Q383E1 23395961
    175641 4v8m:A8 (5.57) BS01 rna N/A GO:0003735 ... N/A 23395961
    175642 4v8m:A9 (5.57) BS01 rna ? GO:0003735 ... Q57WI3 23395961
    175643 4v8m:AC (5.57) BS01 rna ? GO:0000028 ... Q383I8 23395961
    175644 4v8m:AD (5.57) BS01 rna ? GO:0003723 ... Q38B66 23395961
    175645 4v8m:AE (5.57) BS01 rna ? GO:0000314 ... Q38CI4 23395961
    175646 4v8m:AF (5.57) BS01 rna ? GO:0003735 ... Q385Y8 23395961
    175647 4v8m:AG (5.57) BS01 rna ? GO:0003735 ... Q586C2 23395961
    175648 4v8m:AG (5.57) BS02 rna ? GO:0003735 ... Q586C2 23395961
    175649 4v8m:AH (5.57) BS01 rna ? GO:0000028 ... Q4FKG9 23395961
    175650 4v8m:AI (5.57) BS01 rna ? GO:0000028 ... Q57XN7 23395961
    175651 4v8m:AJ (5.57) BS01 rna ? GO:0000314 ... Q580K6 23395961
    175652 4v8m:AK (5.57) BS01 rna ? GO:0000462 ... Q57VV0 23395961
    175653 4v8m:AL (5.57) BS01 rna ? GO:0003735 ... Q382Z8 23395961
    175654 4v8m:AM (5.57) BS01 rna ? GO:0000314 ... Q38B69 23395961
    175655 4v8m:AO (5.57) BS01 rna ? GO:0000028 ... Q583K7 23395961
    175656 4v8m:AP (5.57) BS01 rna ? GO:0003723 ... Q388D3 23395961
    175657 4v8m:AQ (5.57) BS01 rna N/A GO:0003735 ... N/A 23395961
    175658 4v8m:AS (5.57) BS01 rna ? GO:0003735 ... Q38CD1 23395961
    175659 4v8m:AT (5.57) BS01 rna ? GO:0003735 ... Q38AM9 23395961
    175660 4v8m:AU (5.57) BS01 rna ? GO:0003735 ... Q57XX0 23395961
    175661 4v8m:AV (5.57) BS01 rna ? GO:0003729 ... Q384J9 23395961
    175662 4v8m:AW (5.57) BS01 rna ? GO:0000028 ... Q383V7 23395961
    175663 4v8m:AX (5.57) BS01 rna ? GO:0003723 ... Q389I7 23395961
    175664 4v8m:AY (5.57) BS01 rna ? GO:0003735 ... Q584U5 23395961
    175665 4v8m:AZ (5.57) BS01 rna ? GO:0000028 ... Q57U30 23395961
    175666 4v8m:BI (5.57) BS01 rna ? GO:0003723 ... P50885 23395961
    175667 4v8m:BI (5.57) BS02 rna ? GO:0003723 ... P50885 23395961
    175668 4v8m:BJ (5.57) BS01 rna ? GO:0003723 ... Q383V8 23395961
    175669 4v8m:BK (5.57) BS01 rna ? GO:0000027 ... Q38EC5 23395961
    175670 4v8m:BK (5.57) BS02 rna ? GO:0000027 ... Q38EC5 23395961
    175671 4v8m:BK (5.57) BS03 rna ? GO:0000027 ... Q38EC5 23395961
    175672 4v8m:BL (5.57) BS01 rna ? GO:0003723 ... Q38EI9 23395961
    175673 4v8m:BL (5.57) BS02 rna ? GO:0003723 ... Q38EI9 23395961
    175674 4v8m:BM (5.57) BS01 rna ? GO:0003735 ... Q57YK4 23395961
    175675 4v8m:BN (5.57) BS01 rna ? GO:0003723 ... Q57V54 23395961
    175676 4v8m:BN (5.57) BS02 rna ? GO:0003723 ... Q57V54 23395961
    175677 4v8m:BN (5.57) BS03 rna ? GO:0003723 ... Q57V54 23395961
    175678 4v8m:BO (5.57) BS01 rna ? GO:0003729 ... Q585J5 23395961
    175679 4v8m:BO (5.57) BS02 rna ? GO:0003729 ... Q585J5 23395961
    175680 4v8m:BO (5.57) BS03 rna ? GO:0003729 ... Q585J5 23395961
    175681 4v8m:BO (5.57) BS04 rna ? GO:0003729 ... Q585J5 23395961
    175682 4v8m:BP (5.57) BS01 rna ? GO:0003723 ... P55842 23395961
    175683 4v8m:BP (5.57) BS02 rna ? GO:0003723 ... P55842 23395961
    175684 4v8m:BP (5.57) BS03 rna ? GO:0003723 ... P55842 23395961
    175685 4v8m:BQ (5.57) BS01 rna ? GO:0002181 ... Q38CY7 23395961
    175686 4v8m:BQ (5.57) BS02 rna ? GO:0002181 ... Q38CY7 23395961
    175687 4v8m:BQ (5.57) BS03 rna ? GO:0002181 ... Q38CY7 23395961
    175688 4v8m:BR (5.57) BS01 rna ? GO:0002181 ... Q385T6 23395961
    175689 4v8m:BR (5.57) BS02 rna ? GO:0002181 ... Q385T6 23395961
    175690 4v8m:BR (5.57) BS03 rna ? GO:0002181 ... Q385T6 23395961
    175691 4v8m:BR (5.57) BS04 rna ? GO:0002181 ... Q385T6 23395961
    175692 4v8m:BS (5.57) BS01 rna ? GO:0003729 ... Q382C4 23395961
    175693 4v8m:BS (5.57) BS02 rna ? GO:0003729 ... Q382C4 23395961
    175694 4v8m:BS (5.57) BS03 rna ? GO:0003729 ... Q382C4 23395961
    175695 4v8m:BT (5.57) BS01 rna ? GO:0003723 ... Q57ZI7 23395961
    175696 4v8m:BT (5.57) BS02 rna ? GO:0003723 ... Q57ZI7 23395961
    175697 4v8m:BT (5.57) BS03 rna ? GO:0003723 ... Q57ZI7 23395961
    175698 4v8m:BT (5.57) BS04 rna ? GO:0003723 ... Q57ZI7 23395961
    175699 4v8m:BT (5.57) BS05 rna ? GO:0003723 ... Q57ZI7 23395961
    175700 4v8m:BU (5.57) BS01 rna ? GO:0003735 ... Q4FKD4 23395961
    175701 4v8m:BU (5.57) BS02 rna ? GO:0003735 ... Q4FKD4 23395961
    175702 4v8m:BU (5.57) BS03 rna ? GO:0003735 ... Q4FKD4 23395961
    175703 4v8m:BV (5.57) BS01 rna ? GO:0002181 ... Q383R3 23395961
    175704 4v8m:BV (5.57) BS02 rna ? GO:0002181 ... Q383R3 23395961
    175705 4v8m:BW (5.57) BS01 rna ? GO:0003735 ... Q38DP2 23395961
    175706 4v8m:BW (5.57) BS02 rna ? GO:0003735 ... Q38DP2 23395961
    175707 4v8m:BX (5.57) BS01 rna ? GO:0000027 ... Q57ZH2 23395961
    175708 4v8m:BX (5.57) BS02 rna ? GO:0000027 ... Q57ZH2 23395961
    175709 4v8m:BX (5.57) BS03 rna ? GO:0000027 ... Q57ZH2 23395961
    175710 4v8m:BY (5.57) BS01 rna ? GO:0002181 ... Q38B56 23395961
    175711 4v8m:BY (5.57) BS02 rna ? GO:0002181 ... Q38B56 23395961
    175712 4v8m:BY (5.57) BS03 rna ? GO:0002181 ... Q38B56 23395961
    175713 4v8m:BZ (5.57) BS01 rna ? GO:0002181 ... Q38D25 23395961
    175714 4v8m:BZ (5.57) BS02 rna ? GO:0002181 ... Q38D25 23395961
    175715 4v8m:Ba (5.57) BS01 rna ? GO:0003735 ... Q381J6 23395961
    175716 4v8m:Ba (5.57) BS02 rna ? GO:0003735 ... Q381J6 23395961
    175717 4v8m:Ba (5.57) BS03 rna ? GO:0003735 ... Q381J6 23395961
    175718 4v8m:Bb (5.57) BS01 rna ? GO:0003735 ... Q38DN9 23395961
    175719 4v8m:Bb (5.57) BS02 rna ? GO:0003735 ... Q38DN9 23395961
    175720 4v8m:Bc (5.57) BS01 rna ? GO:0003729 ... Q385E9 23395961
    175721 4v8m:Bd (5.57) BS01 rna ? GO:0002181 ... Q383S6 23395961
    175722 4v8m:Bd (5.57) BS02 rna ? GO:0002181 ... Q383S6 23395961
    175723 4v8m:Be (5.57) BS01 rna ? GO:0002181 ... Q57W56 23395961
    175724 4v8m:Be (5.57) BS02 rna ? GO:0002181 ... Q57W56 23395961
    175725 4v8m:Be (5.57) BS03 rna ? GO:0002181 ... Q57W56 23395961
    175726 4v8m:Be (5.57) BS04 rna ? GO:0002181 ... Q57W56 23395961
    175727 4v8m:Bf (5.57) BS01 rna ? GO:0003723 ... Q581Q1 23395961
    175728 4v8m:Bf (5.57) BS02 rna ? GO:0003723 ... Q581Q1 23395961
    175729 4v8m:Bf (5.57) BS03 rna ? GO:0003723 ... Q581Q1 23395961
    175730 4v8m:Bf (5.57) BS04 rna ? GO:0003723 ... Q581Q1 23395961
    175731 4v8m:Bg (5.57) BS01 rna ? GO:0003723 ... Q38BI9 23395961
    175732 4v8m:Bg (5.57) BS02 rna ? GO:0003723 ... Q38BI9 23395961
    175733 4v8m:Bh (5.57) BS01 rna ? GO:0002181 ... Q38DH8 23395961
    175734 4v8m:Bh (5.57) BS02 rna ? GO:0002181 ... Q38DH8 23395961
    175735 4v8m:Bh (5.57) BS03 rna ? GO:0002181 ... Q38DH8 23395961
    175736 4v8m:Bh (5.57) BS04 rna ? GO:0002181 ... Q38DH8 23395961
    175737 4v8m:Bi (5.57) BS01 rna ? GO:0003735 ... Q38CL1 23395961
    175738 4v8m:Bj (5.57) BS01 rna ? GO:0003735 ... Q383V6 23395961
    175739 4v8m:Bj (5.57) BS02 rna ? GO:0003735 ... Q383V6 23395961
    175740 4v8m:Bj (5.57) BS03 rna ? GO:0003735 ... Q383V6 23395961
    175741 4v8m:Bk (5.57) BS01 rna ? GO:0000463 ... Q38FW8 23395961
    175742 4v8m:Bk (5.57) BS02 rna ? GO:0000463 ... Q38FW8 23395961
    175743 4v8m:Bl (5.57) BS01 rna ? GO:0002181 ... Q584G9 23395961
    175744 4v8m:Bl (5.57) BS02 rna ? GO:0002181 ... Q584G9 23395961
    175745 4v8m:Bl (5.57) BS03 rna ? GO:0002181 ... Q584G9 23395961
    175746 4v8m:Bl (5.57) BS04 rna ? GO:0002181 ... Q584G9 23395961
    175747 4v8m:Bm (5.57) BS01 rna ? GO:0002181 ... Q38CY6 23395961
    175748 4v8m:Bm (5.57) BS02 rna ? GO:0002181 ... Q38CY6 23395961
    175749 4v8m:Bn (5.57) BS01 rna ? GO:0003723 ... Q386L1 23395961
    175750 4v8m:Bn (5.57) BS02 rna ? GO:0003723 ... Q386L1 23395961
    175751 4v8m:Bn (5.57) BS03 rna ? GO:0003723 ... Q386L1 23395961
    175752 4v8m:Bo (5.57) BS01 rna ? GO:0003735 ... Q38AW9 23395961
    175753 4v8m:Bo (5.57) BS02 rna ? GO:0003735 ... Q38AW9 23395961
    175754 4v8m:Bo (5.57) BS03 rna ? GO:0003735 ... Q38AW9 23395961
    175755 4v8m:Bp (5.57) BS01 rna ? GO:0003735 ... Q38FV6 23395961
    175756 4v8m:Bp (5.57) BS02 rna ? GO:0003735 ... Q38FV6 23395961
    175757 4v8m:Bp (5.57) BS03 rna ? GO:0003735 ... Q38FV6 23395961
    175758 4v8m:Bq (5.57) BS01 rna ? GO:0003735 ... Q57UJ8 23395961
    175759 4v8m:Bq (5.57) BS02 rna ? GO:0003735 ... Q57UJ8 23395961
    175760 4v8m:Bq (5.57) BS03 rna ? GO:0003735 ... Q57UJ8 23395961
    175761 4v8m:Br (5.57) BS01 rna ? GO:0003723 ... Q582N2 23395961
    175762 4v8m:Br (5.57) BS02 rna ? GO:0003723 ... Q582N2 23395961
    175763 4v8m:Br (5.57) BS03 rna ? GO:0003723 ... Q582N2 23395961
    175764 4v8m:Bs (5.57) BS01 rna ? GO:0003735 ... P21899 23395961
    175765 4v8m:Bs (5.57) BS02 rna ? GO:0003735 ... P21899 23395961
    175766 4v8m:Bs (5.57) BS03 rna ? GO:0003735 ... P21899 23395961
    175767 4v8m:Bt (5.57) BS01 rna ? GO:0003735 ... D7SG81 23395961
    175768 4v8m:Bt (5.57) BS02 rna ? GO:0003735 ... D7SG81 23395961
    175769 4v8m:Bu (5.57) BS01 rna ? GO:0000027 ... Q38CY8 23395961
    175770 4v8m:Bu (5.57) BS02 rna ? GO:0000027 ... Q38CY8 23395961
    175771 4v8m:Bu (5.57) BS03 rna ? GO:0000027 ... Q38CY8 23395961
    175772 4v8m:Bv (5.57) BS01 rna ? GO:0000027 ... Q389K1 23395961
    175773 4v8m:Bv (5.57) BS02 rna ? GO:0000027 ... Q389K1 23395961
    175774 4v8m:Bw (5.57) BS01 rna ? GO:0000463 ... Q57V35 23395961
    175775 4v8m:Bw (5.57) BS02 rna ? GO:0000463 ... Q57V35 23395961
    175776 4v8m:Bx (5.57) BS01 rna ? GO:0000470 ... Q57VM1 23395961
    175777 4v8m:Bx (5.57) BS02 rna ? GO:0000470 ... Q57VM1 23395961
    175778 4v8m:Bx (5.57) BS03 rna ? GO:0000470 ... Q57VM1 23395961
    175779 4v8m:By (5.57) BS01 rna ? GO:0002181 ... Q38CD0 23395961
    175780 4v8m:By (5.57) BS02 rna ? GO:0002181 ... Q38CD0 23395961
    175781 4v8m:By (5.57) BS03 rna ? GO:0002181 ... Q38CD0 23395961
    175782 4v8m:By (5.57) BS04 rna ? GO:0002181 ... Q38CD0 23395961
    175783 4v8n:AB (3.1) BS01 rna ? GO:0003735 ... P80371 23542153
    175784 4v8n:AC (3.1) BS01 rna ? GO:0003676 ... P80372 23542153
    175785 4v8n:AD (3.1) BS01 rna ? GO:0003723 ... P80373 23542153
    175786 4v8n:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 23542153
    175787 4v8n:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 23542153
    175788 4v8n:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 23542153
    175789 4v8n:AG (3.1) BS01 rna ? GO:0000028 ... P17291 23542153
    175790 4v8n:AG (3.1) BS02 rna ? GO:0000028 ... P17291 23542153
    175791 4v8n:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    175792 4v8n:AI (3.1) BS01 rna ? GO:0000049 ... P80374 23542153
    175793 4v8n:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 23542153
    175794 4v8n:AK (3.1) BS01 rna ? GO:0003735 ... P80376 23542153
    175795 4v8n:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 23542153
    175796 4v8n:AM (3.1) BS01 rna ? GO:0000049 ... P80377 23542153
    175797 4v8n:AM (3.1) BS02 rna ? GO:0000049 ... P80377 23542153
    175798 4v8n:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 23542153
    175799 4v8n:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 23542153
    175800 4v8n:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 23542153
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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