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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175401 4v8k:AM (3.006) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    175402 4v8k:AM (3.006) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    175403 4v8k:AM (3.006) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    175404 4v8k:AM (3.006) BS04 BPH ? GO:0005515 ... A8ASG6 24670637
    175405 4v8k:AM (3.006) BS05 FE ? GO:0005515 ... A8ASG6 24670637
    175406 4v8k:AM (3.006) BS06 MQ8 ? GO:0005515 ... A8ASG6 24670637
    175407 4v8k:AM (3.006) BS07 CRT ? GO:0005515 ... A8ASG6 24670637
    175408 4v8k:AN (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175409 4v8k:AN (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175410 4v8k:AN (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175411 4v8k:AO (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175412 4v8k:AO (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175413 4v8k:AO (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175414 4v8k:AO (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175415 4v8k:AO (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175416 4v8k:AO (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175417 4v8k:AP (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175418 4v8k:AP (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175419 4v8k:AP (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175420 4v8k:AQ (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175421 4v8k:AQ (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175422 4v8k:AQ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175423 4v8k:AQ (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175424 4v8k:AQ (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175425 4v8k:AQ (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175426 4v8k:AR (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175427 4v8k:AR (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175428 4v8k:AR (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175429 4v8k:AS (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175430 4v8k:AS (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175431 4v8k:AS (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175432 4v8k:AS (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175433 4v8k:AS (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175434 4v8k:AS (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175435 4v8k:AS (3.006) BS07 BCL ? GO:0005515 ... D2Z0P2 24670637
    175436 4v8k:AT (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175437 4v8k:AT (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175438 4v8k:AT (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175439 4v8k:AU (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175440 4v8k:AU (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175441 4v8k:AU (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175442 4v8k:AU (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175443 4v8k:AV (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175444 4v8k:AV (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175445 4v8k:AV (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175446 4v8k:AW (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175447 4v8k:AW (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175448 4v8k:AW (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175449 4v8k:AW (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175450 4v8k:AW (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175451 4v8k:AW (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175452 4v8k:AX (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175453 4v8k:AX (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175454 4v8k:AX (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175455 4v8k:AX (3.006) BS04 CRT ? GO:0005515 ... D2Z0P1 24670637
    175456 4v8k:AY (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175457 4v8k:AY (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175458 4v8k:AY (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175459 4v8k:AY (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175460 4v8k:AY (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175461 4v8k:AY (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    175462 4v8k:AY (3.006) BS07 CRT ? GO:0005515 ... D2Z0P2 24670637
    175463 4v8k:AZ (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175464 4v8k:AZ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175465 4v8k:AZ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175466 4v8k:B0 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175467 4v8k:B0 (3.006) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    175468 4v8k:B0 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175469 4v8k:B1 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175470 4v8k:B1 (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175471 4v8k:B1 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175472 4v8k:B1 (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175473 4v8k:B1 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175474 4v8k:B1 (3.006) BS06 BCL ? GO:0005515 ... D2Z0P2 24670637
    175475 4v8k:B2 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175476 4v8k:B2 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175477 4v8k:B2 (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175478 4v8k:B2 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    175479 4v8k:B3 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175480 4v8k:B3 (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175481 4v8k:B3 (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175482 4v8k:B3 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175483 4v8k:B3 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175484 4v8k:B3 (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175485 4v8k:B4 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175486 4v8k:B4 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175487 4v8k:B4 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175488 4v8k:B5 (3.006) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    175489 4v8k:B5 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    175490 4v8k:B5 (3.006) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    175491 4v8k:B5 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175492 4v8k:B5 (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175493 4v8k:B6 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175494 4v8k:B6 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175495 4v8k:B6 (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175496 4v8k:B7 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175497 4v8k:B7 (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175498 4v8k:B7 (3.006) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    175499 4v8k:B7 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175500 4v8k:B7 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175501 4v8k:B8 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175502 4v8k:B8 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175503 4v8k:B8 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175504 4v8k:B9 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175505 4v8k:B9 (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175506 4v8k:B9 (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175507 4v8k:B9 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175508 4v8k:B9 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175509 4v8k:BA (3.006) BS01 BCL ? GO:0005515 ... D2Z0P2 24670637
    175510 4v8k:BA (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175511 4v8k:BA (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175512 4v8k:BA (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175513 4v8k:BA (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175514 4v8k:BA (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175515 4v8k:BB (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175516 4v8k:BB (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175517 4v8k:BB (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175518 4v8k:BC (3.006) BS01 HEM ? GO:0005506 ... D2Z0P5 24670637
    175519 4v8k:BC (3.006) BS02 HEM ? GO:0005506 ... D2Z0P5 24670637
    175520 4v8k:BC (3.006) BS03 HEM ? GO:0005506 ... D2Z0P5 24670637
    175521 4v8k:BC (3.006) BS04 HEM ? GO:0005506 ... D2Z0P5 24670637
    175522 4v8k:BC (3.006) BS05 CA ? GO:0005506 ... D2Z0P5 24670637
    175523 4v8k:BD (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175524 4v8k:BD (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175525 4v8k:BD (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175526 4v8k:BD (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175527 4v8k:BD (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175528 4v8k:BE (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175529 4v8k:BE (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175530 4v8k:BE (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175531 4v8k:BF (3.006) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    175532 4v8k:BF (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    175533 4v8k:BF (3.006) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    175534 4v8k:BF (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175535 4v8k:BF (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175536 4v8k:BG (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175537 4v8k:BG (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175538 4v8k:BG (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175539 4v8k:BG (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    175540 4v8k:BI (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175541 4v8k:BI (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175542 4v8k:BI (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175543 4v8k:BI (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175544 4v8k:BI (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175545 4v8k:BI (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175546 4v8k:BJ (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175547 4v8k:BJ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175548 4v8k:BJ (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175549 4v8k:BK (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175550 4v8k:BK (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175551 4v8k:BK (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175552 4v8k:BK (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175553 4v8k:BK (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175554 4v8k:BL (3.006) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    175555 4v8k:BL (3.006) BS02 BPH ? GO:0005515 ... D2Z0P3 24670637
    175556 4v8k:BL (3.006) BS03 UQ8 ? GO:0005515 ... D2Z0P3 24670637
    175557 4v8k:BL (3.006) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    175558 4v8k:BL (3.006) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    175559 4v8k:BL (3.006) BS06 BCL ? GO:0005515 ... D2Z0P3 24670637
    175560 4v8k:BL (3.006) BS07 BPH ? GO:0005515 ... D2Z0P3 24670637
    175561 4v8k:BL (3.006) BS08 FE ? GO:0005515 ... D2Z0P3 24670637
    175562 4v8k:BM (3.006) BS01 BPH ? GO:0005515 ... A8ASG6 24670637
    175563 4v8k:BM (3.006) BS02 BCL ? GO:0005515 ... A8ASG6 24670637
    175564 4v8k:BM (3.006) BS03 BCL ? GO:0005515 ... A8ASG6 24670637
    175565 4v8k:BM (3.006) BS04 BCL ? GO:0005515 ... A8ASG6 24670637
    175566 4v8k:BM (3.006) BS05 BPH ? GO:0005515 ... A8ASG6 24670637
    175567 4v8k:BM (3.006) BS06 FE ? GO:0005515 ... A8ASG6 24670637
    175568 4v8k:BM (3.006) BS07 MQ8 ? GO:0005515 ... A8ASG6 24670637
    175569 4v8k:BM (3.006) BS08 CRT ? GO:0005515 ... A8ASG6 24670637
    175570 4v8k:BN (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175571 4v8k:BN (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175572 4v8k:BN (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175573 4v8k:BO (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175574 4v8k:BO (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175575 4v8k:BO (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175576 4v8k:BO (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175577 4v8k:BO (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175578 4v8k:BP (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175579 4v8k:BP (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175580 4v8k:BP (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175581 4v8k:BQ (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175582 4v8k:BQ (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175583 4v8k:BQ (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175584 4v8k:BQ (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175585 4v8k:BQ (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175586 4v8k:BQ (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175587 4v8k:BR (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175588 4v8k:BR (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175589 4v8k:BR (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175590 4v8k:BS (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175591 4v8k:BS (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175592 4v8k:BS (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175593 4v8k:BS (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175594 4v8k:BS (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175595 4v8k:BT (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175596 4v8k:BT (3.006) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    175597 4v8k:BT (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175598 4v8k:BU (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175599 4v8k:BU (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175600 4v8k:BU (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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