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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175201 4v8j:BC (3.9) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    175202 4v8j:BC (3.9) BS02 rna ? GO:0000049 ... Q5SLP7 23630274
    175203 4v8j:BD (3.9) BS01 rna ? GO:0002181 ... P60405 23630274
    175204 4v8j:BD (3.9) BS02 rna ? GO:0002181 ... P60405 23630274
    175205 4v8j:BD (3.9) BS03 MG ? GO:0002181 ... P60405 23630274
    175206 4v8j:BE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    175207 4v8j:BF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    175208 4v8j:BG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    175209 4v8j:BG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    175210 4v8j:BG (3.9) BS03 rna ? GO:0000049 ... Q5SHQ0 23630274
    175211 4v8j:BH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175212 4v8j:BI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    175213 4v8j:BN (3.9) BS01 rna ? GO:0003729 ... P60488 23630274
    175214 4v8j:BO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    175215 4v8j:BO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    175216 4v8j:BO (3.9) BS03 MG ? GO:0003735 ... Q5SHP8 23630274
    175217 4v8j:BP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    175218 4v8j:BQ (3.9) BS01 rna ? GO:0000049 ... P60489 23630274
    175219 4v8j:BR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    175220 4v8j:BS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    175221 4v8j:BS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    175222 4v8j:BT (3.9) BS01 rna ? GO:0003735 ... P60490 23630274
    175223 4v8j:BT (3.9) BS02 rna ? GO:0003735 ... P60490 23630274
    175224 4v8j:BU (3.9) BS01 rna ? GO:0000027 ... P60491 23630274
    175225 4v8j:BV (3.9) BS01 rna ? GO:0003723 ... P60492 23630274
    175226 4v8j:BW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    175227 4v8j:BX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    175228 4v8j:BY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    175229 4v8j:BZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    175230 4v8j:BZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    175231 4v8j:CB (3.9) BS01 rna ? GO:0003735 ... P80371 23630274
    175232 4v8j:CC (3.9) BS01 rna ? GO:0003676 ... P80372 23630274
    175233 4v8j:CD (3.9) BS01 rna ? GO:0003723 ... P80373 23630274
    175234 4v8j:CD (3.9) BS02 ZN ? GO:0003723 ... P80373 23630274
    175235 4v8j:CE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    175236 4v8j:CF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    175237 4v8j:CG (3.9) BS01 rna ? GO:0000028 ... P17291 23630274
    175238 4v8j:CG (3.9) BS02 rna ? GO:0000028 ... P17291 23630274
    175239 4v8j:CG (3.9) BS03 rna ? GO:0000028 ... P17291 23630274
    175240 4v8j:CH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175241 4v8j:CI (3.9) BS01 rna ? GO:0000049 ... P80374 23630274
    175242 4v8j:CI (3.9) BS02 rna ? GO:0000049 ... P80374 23630274
    175243 4v8j:CJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    175244 4v8j:CK (3.9) BS01 rna ? GO:0003735 ... P80376 23630274
    175245 4v8j:CL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    175246 4v8j:CM (3.9) BS01 rna ? GO:0000049 ... P80377 23630274
    175247 4v8j:CM (3.9) BS02 rna ? GO:0000049 ... P80377 23630274
    175248 4v8j:CM (3.9) BS03 rna ? GO:0000049 ... P80377 23630274
    175249 4v8j:CN (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175250 4v8j:CN (3.9) BS02 ZN N/A GO:0003735 ... N/A 23630274
    175251 4v8j:CO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    175252 4v8j:CO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    175253 4v8j:CP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    175254 4v8j:CQ (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175255 4v8j:CR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    175256 4v8j:CS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    175257 4v8j:CT (3.9) BS01 rna ? GO:0003723 ... P80380 23630274
    175258 4v8j:D0 (3.9) BS01 rna ? GO:0003735 ... P60493 23630274
    175259 4v8j:D0 (3.9) BS02 rna ? GO:0003735 ... P60493 23630274
    175260 4v8j:D0 (3.9) BS03 rna ? GO:0003735 ... P60493 23630274
    175261 4v8j:D1 (3.9) BS01 rna ? GO:0003735 ... P60494 23630274
    175262 4v8j:D2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    175263 4v8j:D3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    175264 4v8j:D3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    175265 4v8j:D5 (3.9) BS01 rna ? GO:0003735 ... P80339 23630274
    175266 4v8j:D6 (3.9) BS01 rna ? GO:0000049 ... P35871 23630274
    175267 4v8j:D7 (3.9) BS01 rna ? GO:0003735 ... P80340 23630274
    175268 4v8j:D8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    175269 4v8j:D9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    175270 4v8j:DC (3.9) BS01 rna ? GO:0000049 ... Q5SLP7 23630274
    175271 4v8j:DD (3.9) BS01 rna ? GO:0002181 ... P60405 23630274
    175272 4v8j:DD (3.9) BS02 MG ? GO:0002181 ... P60405 23630274
    175273 4v8j:DE (3.9) BS01 rna ? GO:0003735 ... Q5SHN8 23630274
    175274 4v8j:DF (3.9) BS01 rna ? GO:0003735 ... Q5SHN9 23630274
    175275 4v8j:DG (3.9) BS01 rna ? GO:0000049 ... Q5SHQ0 23630274
    175276 4v8j:DG (3.9) BS02 rna ? GO:0000049 ... Q5SHQ0 23630274
    175277 4v8j:DG (3.9) BS03 rna ? GO:0000049 ... Q5SHQ0 23630274
    175278 4v8j:DH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175279 4v8j:DI (3.9) BS01 rna ? GO:0003735 ... Q5SLQ1 23630274
    175280 4v8j:DI (3.9) BS02 rna ? GO:0003735 ... Q5SLQ1 23630274
    175281 4v8j:DN (3.9) BS01 rna ? GO:0003729 ... P60488 23630274
    175282 4v8j:DO (3.9) BS01 rna ? GO:0003735 ... Q5SHP8 23630274
    175283 4v8j:DO (3.9) BS02 rna ? GO:0003735 ... Q5SHP8 23630274
    175284 4v8j:DP (3.9) BS01 rna ? GO:0003735 ... Q5SHQ7 23630274
    175285 4v8j:DQ (3.9) BS01 rna ? GO:0000049 ... P60489 23630274
    175286 4v8j:DQ (3.9) BS02 rna ? GO:0000049 ... P60489 23630274
    175287 4v8j:DR (3.9) BS01 rna ? GO:0003735 ... Q9Z9H5 23630274
    175288 4v8j:DS (3.9) BS01 rna ? GO:0003735 ... Q5SHQ4 23630274
    175289 4v8j:DS (3.9) BS02 rna ? GO:0003735 ... Q5SHQ4 23630274
    175290 4v8j:DT (3.9) BS01 rna ? GO:0003735 ... P60490 23630274
    175291 4v8j:DT (3.9) BS02 rna ? GO:0003735 ... P60490 23630274
    175292 4v8j:DU (3.9) BS01 rna ? GO:0000027 ... P60491 23630274
    175293 4v8j:DV (3.9) BS01 rna ? GO:0003723 ... P60492 23630274
    175294 4v8j:DW (3.9) BS01 rna ? GO:0003735 ... Q5SHP3 23630274
    175295 4v8j:DX (3.9) BS01 rna ? GO:0000027 ... Q5SHP0 23630274
    175296 4v8j:DY (3.9) BS01 rna ? GO:0003723 ... Q5SHP9 23630274
    175297 4v8j:DZ (3.9) BS01 rna ? GO:0003723 ... Q5SHZ1 23630274
    175298 4v8j:DZ (3.9) BS02 rna ? GO:0003723 ... Q5SHZ1 23630274
    175299 4v8k:A0 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175300 4v8k:A0 (3.006) BS02 CRT ? GO:0005515 ... D2Z0P1 24670637
    175301 4v8k:A0 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175302 4v8k:A1 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175303 4v8k:A1 (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175304 4v8k:A1 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175305 4v8k:A1 (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175306 4v8k:A1 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175307 4v8k:A2 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175308 4v8k:A2 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175309 4v8k:A2 (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175310 4v8k:A2 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    175311 4v8k:A3 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175312 4v8k:A3 (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175313 4v8k:A3 (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175314 4v8k:A3 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175315 4v8k:A3 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175316 4v8k:A3 (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175317 4v8k:A4 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175318 4v8k:A4 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175319 4v8k:A4 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175320 4v8k:A5 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175321 4v8k:A5 (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175322 4v8k:A5 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175323 4v8k:A5 (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175324 4v8k:A5 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175325 4v8k:A5 (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175326 4v8k:A5 (3.006) BS07 BCL ? GO:0005515 ... D2Z0P2 24670637
    175327 4v8k:A6 (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175328 4v8k:A6 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175329 4v8k:A6 (3.006) BS03 CA ? GO:0005515 ... D2Z0P1 24670637
    175330 4v8k:A6 (3.006) BS04 CRT ? GO:0005515 ... D2Z0P1 24670637
    175331 4v8k:A7 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175332 4v8k:A7 (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175333 4v8k:A7 (3.006) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    175334 4v8k:A7 (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175335 4v8k:A7 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175336 4v8k:A7 (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175337 4v8k:A8 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175338 4v8k:A8 (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175339 4v8k:A8 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175340 4v8k:A9 (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175341 4v8k:A9 (3.006) BS02 CA ? GO:0005515 ... D2Z0P2 24670637
    175342 4v8k:A9 (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175343 4v8k:A9 (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175344 4v8k:A9 (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175345 4v8k:AA (3.006) BS01 MQ8 ? GO:0005515 ... D2Z0P2 24670637
    175346 4v8k:AA (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    175347 4v8k:AA (3.006) BS03 CRT ? GO:0005515 ... D2Z0P2 24670637
    175348 4v8k:AA (3.006) BS04 CA ? GO:0005515 ... D2Z0P2 24670637
    175349 4v8k:AA (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175350 4v8k:AA (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175351 4v8k:AA (3.006) BS07 CRT ? GO:0005515 ... D2Z0P2 24670637
    175352 4v8k:AB (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175353 4v8k:AB (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175354 4v8k:AB (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175355 4v8k:AC (3.006) BS01 HEM ? GO:0005506 ... D2Z0P5 24670637
    175356 4v8k:AC (3.006) BS02 HEM ? GO:0005506 ... D2Z0P5 24670637
    175357 4v8k:AC (3.006) BS03 HEM ? GO:0005506 ... D2Z0P5 24670637
    175358 4v8k:AC (3.006) BS04 HEM ? GO:0005506 ... D2Z0P5 24670637
    175359 4v8k:AC (3.006) BS05 CA ? GO:0005506 ... D2Z0P5 24670637
    175360 4v8k:AD (3.006) BS01 CRT ? GO:0005515 ... D2Z0P2 24670637
    175361 4v8k:AD (3.006) BS02 CRT ? GO:0005515 ... D2Z0P2 24670637
    175362 4v8k:AD (3.006) BS03 CA ? GO:0005515 ... D2Z0P2 24670637
    175363 4v8k:AD (3.006) BS04 BCL ? GO:0005515 ... D2Z0P2 24670637
    175364 4v8k:AD (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175365 4v8k:AD (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175366 4v8k:AE (3.006) BS01 CRT ? GO:0005515 ... D2Z0P1 24670637
    175367 4v8k:AE (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175368 4v8k:AE (3.006) BS03 BCL ? GO:0005515 ... D2Z0P1 24670637
    175369 4v8k:AF (3.006) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    175370 4v8k:AF (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    175371 4v8k:AF (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175372 4v8k:AF (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175373 4v8k:AF (3.006) BS05 BCL ? GO:0005515 ... D2Z0P2 24670637
    175374 4v8k:AF (3.006) BS06 CRT ? GO:0005515 ... D2Z0P2 24670637
    175375 4v8k:AG (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175376 4v8k:AG (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175377 4v8k:AG (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175378 4v8k:AI (3.006) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    175379 4v8k:AI (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    175380 4v8k:AI (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175381 4v8k:AI (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175382 4v8k:AI (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175383 4v8k:AJ (3.006) BS01 BCL ? GO:0005515 ... D2Z0P1 24670637
    175384 4v8k:AJ (3.006) BS02 BCL ? GO:0005515 ... D2Z0P1 24670637
    175385 4v8k:AJ (3.006) BS03 CRT ? GO:0005515 ... D2Z0P1 24670637
    175386 4v8k:AJ (3.006) BS04 BCL ? GO:0005515 ... D2Z0P1 24670637
    175387 4v8k:AK (3.006) BS01 CA ? GO:0005515 ... D2Z0P2 24670637
    175388 4v8k:AK (3.006) BS02 BCL ? GO:0005515 ... D2Z0P2 24670637
    175389 4v8k:AK (3.006) BS03 BCL ? GO:0005515 ... D2Z0P2 24670637
    175390 4v8k:AK (3.006) BS04 CRT ? GO:0005515 ... D2Z0P2 24670637
    175391 4v8k:AK (3.006) BS05 CRT ? GO:0005515 ... D2Z0P2 24670637
    175392 4v8k:AL (3.006) BS01 BCL ? GO:0005515 ... D2Z0P3 24670637
    175393 4v8k:AL (3.006) BS02 BPH ? GO:0005515 ... D2Z0P3 24670637
    175394 4v8k:AL (3.006) BS03 UQ8 ? GO:0005515 ... D2Z0P3 24670637
    175395 4v8k:AL (3.006) BS04 BCL ? GO:0005515 ... D2Z0P3 24670637
    175396 4v8k:AL (3.006) BS05 BCL ? GO:0005515 ... D2Z0P3 24670637
    175397 4v8k:AL (3.006) BS06 BCL ? GO:0005515 ... D2Z0P3 24670637
    175398 4v8k:AL (3.006) BS07 BPH ? GO:0005515 ... D2Z0P3 24670637
    175399 4v8k:AL (3.006) BS08 FE ? GO:0005515 ... D2Z0P3 24670637
    175400 4v8k:AL (3.006) BS09 MQ8 ? GO:0005515 ... D2Z0P3 24670637
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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