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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    175001 4v8h:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    175002 4v8h:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    175003 4v8h:DY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    175004 4v8h:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    175005 4v8h:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    175006 4v8i:AB (2.7) BS01 rna ? GO:0003735 ... P80371 22605777
    175007 4v8i:AC (2.7) BS01 rna ? GO:0003676 ... P80372 22605777
    175008 4v8i:AD (2.7) BS01 rna ? GO:0003723 ... P80373 22605777
    175009 4v8i:AE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    175010 4v8i:AF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    175011 4v8i:AG (2.7) BS01 rna ? GO:0000028 ... P17291 22605777
    175012 4v8i:AH (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175013 4v8i:AI (2.7) BS01 rna ? GO:0000049 ... P80374 22605777
    175014 4v8i:AJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    175015 4v8i:AK (2.7) BS01 rna ? GO:0003735 ... P80376 22605777
    175016 4v8i:AK (2.7) BS02 MG ? GO:0003735 ... P80376 22605777
    175017 4v8i:AL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    175018 4v8i:AM (2.7) BS01 rna ? GO:0000049 ... P80377 22605777
    175019 4v8i:AN (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175020 4v8i:AN (2.7) BS02 ZN N/A GO:0003735 ... N/A 22605777
    175021 4v8i:AO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    175022 4v8i:AO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    175023 4v8i:AP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    175024 4v8i:AQ (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175025 4v8i:AR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    175026 4v8i:AS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    175027 4v8i:AT (2.7) BS01 rna ? GO:0003723 ... P80380 22605777
    175028 4v8i:AY (2.7) BS01 rna ? GO:0005515 ... P0AD49 22605777
    175029 4v8i:B0 (2.7) BS01 rna ? GO:0003735 ... P60493 22605777
    175030 4v8i:B0 (2.7) BS02 rna ? GO:0003735 ... P60493 22605777
    175031 4v8i:B0 (2.7) BS03 MG ? GO:0003735 ... P60493 22605777
    175032 4v8i:B1 (2.7) BS01 rna ? GO:0003735 ... P60494 22605777
    175033 4v8i:B2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    175034 4v8i:B3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    175035 4v8i:B3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    175036 4v8i:B3 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 22605777
    175037 4v8i:B3 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 22605777
    175038 4v8i:B4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    175039 4v8i:B4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    175040 4v8i:B5 (2.7) BS01 rna ? GO:0003735 ... P80339 22605777
    175041 4v8i:B5 (2.7) BS02 ZN ? GO:0003735 ... P80339 22605777
    175042 4v8i:B6 (2.7) BS01 rna ? GO:0000049 ... P35871 22605777
    175043 4v8i:B6 (2.7) BS02 ZN ? GO:0000049 ... P35871 22605777
    175044 4v8i:B7 (2.7) BS01 rna ? GO:0003735 ... P80340 22605777
    175045 4v8i:B8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    175046 4v8i:B9 (2.7) BS01 rna ? GO:0003735 ... P80256 22605777
    175047 4v8i:B9 (2.7) BS02 ZN ? GO:0003735 ... P80256 22605777
    175048 4v8i:B9 (2.7) BS03 MG ? GO:0003735 ... P80256 22605777
    175049 4v8i:BD (2.7) BS01 rna ? GO:0002181 ... P60405 22605777
    175050 4v8i:BD (2.7) BS02 MG ? GO:0002181 ... P60405 22605777
    175051 4v8i:BD (2.7) BS03 MG ? GO:0002181 ... P60405 22605777
    175052 4v8i:BD (2.7) BS04 MG ? GO:0002181 ... P60405 22605777
    175053 4v8i:BE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    175054 4v8i:BE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 22605777
    175055 4v8i:BE (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 22605777
    175056 4v8i:BF (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    175057 4v8i:BF (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 22605777
    175058 4v8i:BF (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 22605777
    175059 4v8i:BF (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 22605777
    175060 4v8i:BF (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 22605777
    175061 4v8i:BG (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    175062 4v8i:BG (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    175063 4v8i:BG (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 22605777
    175064 4v8i:BH (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175065 4v8i:BI (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    175066 4v8i:BN (2.7) BS01 rna ? GO:0003729 ... P60488 22605777
    175067 4v8i:BO (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    175068 4v8i:BO (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    175069 4v8i:BP (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    175070 4v8i:BQ (2.7) BS01 rna ? GO:0000049 ... P60489 22605777
    175071 4v8i:BQ (2.7) BS02 rna ? GO:0000049 ... P60489 22605777
    175072 4v8i:BQ (2.7) BS03 MG ? GO:0000049 ... P60489 22605777
    175073 4v8i:BR (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    175074 4v8i:BR (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 22605777
    175075 4v8i:BS (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    175076 4v8i:BS (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    175077 4v8i:BT (2.7) BS01 rna ? GO:0003735 ... P60490 22605777
    175078 4v8i:BT (2.7) BS02 rna ? GO:0003735 ... P60490 22605777
    175079 4v8i:BU (2.7) BS01 rna ? GO:0000027 ... P60491 22605777
    175080 4v8i:BU (2.7) BS02 MG ? GO:0000027 ... P60491 22605777
    175081 4v8i:BU (2.7) BS03 MG ? GO:0000027 ... P60491 22605777
    175082 4v8i:BV (2.7) BS01 rna ? GO:0003723 ... P60492 22605777
    175083 4v8i:BV (2.7) BS02 MG ? GO:0003723 ... P60492 22605777
    175084 4v8i:BW (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    175085 4v8i:BX (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    175086 4v8i:BY (2.7) BS01 rna ? GO:0003723 ... Q56435 22605777
    175087 4v8i:BY (2.7) BS02 ZN ? GO:0003723 ... Q56435 22605777
    175088 4v8i:BZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    175089 4v8i:BZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    175090 4v8i:CB (2.7) BS01 rna ? GO:0003735 ... P80371 22605777
    175091 4v8i:CC (2.7) BS01 rna ? GO:0003676 ... P80372 22605777
    175092 4v8i:CD (2.7) BS01 rna ? GO:0003723 ... P80373 22605777
    175093 4v8i:CD (2.7) BS02 ZN ? GO:0003723 ... P80373 22605777
    175094 4v8i:CE (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    175095 4v8i:CF (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    175096 4v8i:CG (2.7) BS01 rna ? GO:0000028 ... P17291 22605777
    175097 4v8i:CH (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175098 4v8i:CI (2.7) BS01 rna ? GO:0000049 ... P80374 22605777
    175099 4v8i:CJ (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    175100 4v8i:CK (2.7) BS01 rna ? GO:0003735 ... P80376 22605777
    175101 4v8i:CK (2.7) BS02 MG ? GO:0003735 ... P80376 22605777
    175102 4v8i:CL (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    175103 4v8i:CL (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 22605777
    175104 4v8i:CM (2.7) BS01 rna ? GO:0000049 ... P80377 22605777
    175105 4v8i:CN (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175106 4v8i:CN (2.7) BS02 ZN N/A GO:0003735 ... N/A 22605777
    175107 4v8i:CO (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    175108 4v8i:CO (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    175109 4v8i:CP (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    175110 4v8i:CQ (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175111 4v8i:CR (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    175112 4v8i:CS (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    175113 4v8i:CT (2.7) BS01 rna ? GO:0003723 ... P80380 22605777
    175114 4v8i:CY (2.7) BS01 rna ? GO:0005515 ... P0AD49 22605777
    175115 4v8i:D0 (2.7) BS01 rna ? GO:0003735 ... P60493 22605777
    175116 4v8i:D0 (2.7) BS02 rna ? GO:0003735 ... P60493 22605777
    175117 4v8i:D1 (2.7) BS01 rna ? GO:0003735 ... P60494 22605777
    175118 4v8i:D2 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    175119 4v8i:D3 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    175120 4v8i:D3 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    175121 4v8i:D4 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    175122 4v8i:D4 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    175123 4v8i:D5 (2.7) BS01 rna ? GO:0003735 ... P80339 22605777
    175124 4v8i:D5 (2.7) BS02 ZN ? GO:0003735 ... P80339 22605777
    175125 4v8i:D6 (2.7) BS01 rna ? GO:0000049 ... P35871 22605777
    175126 4v8i:D6 (2.7) BS02 ZN ? GO:0000049 ... P35871 22605777
    175127 4v8i:D7 (2.7) BS01 rna ? GO:0003735 ... P80340 22605777
    175128 4v8i:D7 (2.7) BS02 MG ? GO:0003735 ... P80340 22605777
    175129 4v8i:D8 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    175130 4v8i:D9 (2.7) BS01 rna ? GO:0003735 ... P80256 22605777
    175131 4v8i:D9 (2.7) BS02 ZN ? GO:0003735 ... P80256 22605777
    175132 4v8i:DD (2.7) BS01 rna ? GO:0002181 ... P60405 22605777
    175133 4v8i:DD (2.7) BS02 rna ? GO:0002181 ... P60405 22605777
    175134 4v8i:DE (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    175135 4v8i:DE (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 22605777
    175136 4v8i:DF (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    175137 4v8i:DG (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    175138 4v8i:DG (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    175139 4v8i:DH (2.7) BS01 rna N/A GO:0003735 ... N/A 22605777
    175140 4v8i:DI (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    175141 4v8i:DN (2.7) BS01 rna ? GO:0003729 ... P60488 22605777
    175142 4v8i:DO (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    175143 4v8i:DO (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    175144 4v8i:DP (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    175145 4v8i:DQ (2.7) BS01 rna ? GO:0000049 ... P60489 22605777
    175146 4v8i:DQ (2.7) BS02 rna ? GO:0000049 ... P60489 22605777
    175147 4v8i:DQ (2.7) BS03 MG ? GO:0000049 ... P60489 22605777
    175148 4v8i:DR (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    175149 4v8i:DS (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    175150 4v8i:DS (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    175151 4v8i:DT (2.7) BS01 rna ? GO:0003735 ... P60490 22605777
    175152 4v8i:DT (2.7) BS02 rna ? GO:0003735 ... P60490 22605777
    175153 4v8i:DU (2.7) BS01 rna ? GO:0000027 ... P60491 22605777
    175154 4v8i:DV (2.7) BS01 rna ? GO:0003723 ... P60492 22605777
    175155 4v8i:DW (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    175156 4v8i:DW (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 22605777
    175157 4v8i:DX (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    175158 4v8i:DY (2.7) BS01 rna ? GO:0003723 ... Q56435 22605777
    175159 4v8i:DY (2.7) BS02 ZN ? GO:0003723 ... Q56435 22605777
    175160 4v8i:DZ (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    175161 4v8i:DZ (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    175162 4v8j:AB (3.9) BS01 rna ? GO:0003735 ... P80371 23630274
    175163 4v8j:AC (3.9) BS01 rna ? GO:0003676 ... P80372 23630274
    175164 4v8j:AD (3.9) BS01 rna ? GO:0003723 ... P80373 23630274
    175165 4v8j:AD (3.9) BS02 ZN ? GO:0003723 ... P80373 23630274
    175166 4v8j:AE (3.9) BS01 rna ? GO:0003723 ... Q5SHQ5 23630274
    175167 4v8j:AF (3.9) BS01 rna ? GO:0003735 ... Q5SLP8 23630274
    175168 4v8j:AG (3.9) BS01 rna ? GO:0000028 ... P17291 23630274
    175169 4v8j:AG (3.9) BS02 rna ? GO:0000028 ... P17291 23630274
    175170 4v8j:AH (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175171 4v8j:AI (3.9) BS01 rna ? GO:0000049 ... P80374 23630274
    175172 4v8j:AJ (3.9) BS01 rna ? GO:0000049 ... Q5SHN7 23630274
    175173 4v8j:AJ (3.9) BS02 rna ? GO:0000049 ... Q5SHN7 23630274
    175174 4v8j:AK (3.9) BS01 rna ? GO:0003735 ... P80376 23630274
    175175 4v8j:AL (3.9) BS01 rna ? GO:0000049 ... Q5SHN3 23630274
    175176 4v8j:AM (3.9) BS01 rna ? GO:0000049 ... P80377 23630274
    175177 4v8j:AM (3.9) BS02 rna ? GO:0000049 ... P80377 23630274
    175178 4v8j:AM (3.9) BS03 rna ? GO:0000049 ... P80377 23630274
    175179 4v8j:AM (3.9) BS04 rna ? GO:0000049 ... P80377 23630274
    175180 4v8j:AN (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175181 4v8j:AN (3.9) BS02 ZN N/A GO:0003735 ... N/A 23630274
    175182 4v8j:AO (3.9) BS01 rna ? GO:0003735 ... Q5SJ76 23630274
    175183 4v8j:AO (3.9) BS02 rna ? GO:0003735 ... Q5SJ76 23630274
    175184 4v8j:AP (3.9) BS01 rna ? GO:0003735 ... Q5SJH3 23630274
    175185 4v8j:AQ (3.9) BS01 rna N/A GO:0003735 ... N/A 23630274
    175186 4v8j:AR (3.9) BS01 rna ? GO:0003735 ... Q5SLQ0 23630274
    175187 4v8j:AS (3.9) BS01 rna ? GO:0000028 ... Q5SHP2 23630274
    175188 4v8j:AT (3.9) BS01 rna ? GO:0003723 ... P80380 23630274
    175189 4v8j:B0 (3.9) BS01 rna ? GO:0003735 ... P60493 23630274
    175190 4v8j:B0 (3.9) BS02 rna ? GO:0003735 ... P60493 23630274
    175191 4v8j:B1 (3.9) BS01 rna ? GO:0003735 ... P60494 23630274
    175192 4v8j:B1 (3.9) BS02 MG ? GO:0003735 ... P60494 23630274
    175193 4v8j:B2 (3.9) BS01 rna ? GO:0003735 ... Q5SHP6 23630274
    175194 4v8j:B3 (3.9) BS01 rna ? GO:0003735 ... Q5SHQ6 23630274
    175195 4v8j:B3 (3.9) BS02 rna ? GO:0003735 ... Q5SHQ6 23630274
    175196 4v8j:B5 (3.9) BS01 rna ? GO:0003735 ... P80339 23630274
    175197 4v8j:B6 (3.9) BS01 rna ? GO:0000049 ... P35871 23630274
    175198 4v8j:B7 (3.9) BS01 rna ? GO:0003735 ... P80340 23630274
    175199 4v8j:B8 (3.9) BS01 rna ? GO:0003735 ... Q5SKU1 23630274
    175200 4v8j:B9 (3.9) BS01 rna ? GO:0003735 ... Q5SHR2 23630274
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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