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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174801 4v8g:CB (3.0) BS01 rna ? GO:0003735 ... P80371 22605777
    174802 4v8g:CC (3.0) BS01 rna ? GO:0003676 ... P80372 22605777
    174803 4v8g:CD (3.0) BS01 rna ? GO:0003723 ... P80373 22605777
    174804 4v8g:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    174805 4v8g:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    174806 4v8g:CG (3.0) BS01 rna ? GO:0000028 ... P17291 22605777
    174807 4v8g:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174808 4v8g:CI (3.0) BS01 rna ? GO:0000049 ... P80374 22605777
    174809 4v8g:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    174810 4v8g:CK (3.0) BS01 rna ? GO:0003735 ... P80376 22605777
    174811 4v8g:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    174812 4v8g:CM (3.0) BS01 rna ? GO:0000049 ... P80377 22605777
    174813 4v8g:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174814 4v8g:CN (3.0) BS02 ZN N/A GO:0003735 ... N/A 22605777
    174815 4v8g:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    174816 4v8g:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    174817 4v8g:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    174818 4v8g:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174819 4v8g:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    174820 4v8g:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    174821 4v8g:CT (3.0) BS01 rna ? GO:0003723 ... P80380 22605777
    174822 4v8g:CV (3.0) BS01 rna ? GO:0005737 ... P0AFW2 22605777
    174823 4v8g:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 22605777
    174824 4v8g:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 22605777
    174825 4v8g:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 22605777
    174826 4v8g:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    174827 4v8g:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    174828 4v8g:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    174829 4v8g:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    174830 4v8g:D4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    174831 4v8g:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 22605777
    174832 4v8g:D5 (3.0) BS02 ZN ? GO:0003735 ... P80339 22605777
    174833 4v8g:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 22605777
    174834 4v8g:D6 (3.0) BS02 ZN ? GO:0000049 ... P35871 22605777
    174835 4v8g:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 22605777
    174836 4v8g:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    174837 4v8g:D9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    174838 4v8g:D9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    174839 4v8g:DD (3.0) BS01 rna ? GO:0002181 ... P60405 22605777
    174840 4v8g:DD (3.0) BS02 rna ? GO:0002181 ... P60405 22605777
    174841 4v8g:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    174842 4v8g:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    174843 4v8g:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    174844 4v8g:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    174845 4v8g:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174846 4v8g:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    174847 4v8g:DN (3.0) BS01 rna ? GO:0003729 ... P60488 22605777
    174848 4v8g:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    174849 4v8g:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    174850 4v8g:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    174851 4v8g:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 22605777
    174852 4v8g:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 22605777
    174853 4v8g:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    174854 4v8g:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    174855 4v8g:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    174856 4v8g:DT (3.0) BS01 rna ? GO:0003735 ... P60490 22605777
    174857 4v8g:DT (3.0) BS02 rna ? GO:0003735 ... P60490 22605777
    174858 4v8g:DU (3.0) BS01 rna ? GO:0000027 ... P60491 22605777
    174859 4v8g:DV (3.0) BS01 rna ? GO:0003723 ... P60492 22605777
    174860 4v8g:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    174861 4v8g:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    174862 4v8g:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    174863 4v8g:DY (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    174864 4v8g:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    174865 4v8g:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    174866 4v8h:AB (3.1) BS01 rna ? GO:0003735 ... P80371 22605777
    174867 4v8h:AC (3.1) BS01 rna ? GO:0003676 ... P80372 22605777
    174868 4v8h:AD (3.1) BS01 rna ? GO:0003723 ... P80373 22605777
    174869 4v8h:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 22605777
    174870 4v8h:AD (3.1) BS03 MG ? GO:0003723 ... P80373 22605777
    174871 4v8h:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    174872 4v8h:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    174873 4v8h:AG (3.1) BS01 rna ? GO:0000028 ... P17291 22605777
    174874 4v8h:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174875 4v8h:AI (3.1) BS01 rna ? GO:0000049 ... P80374 22605777
    174876 4v8h:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    174877 4v8h:AK (3.1) BS01 rna ? GO:0003735 ... P80376 22605777
    174878 4v8h:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    174879 4v8h:AM (3.1) BS01 rna ? GO:0000049 ... P80377 22605777
    174880 4v8h:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174881 4v8h:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 22605777
    174882 4v8h:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    174883 4v8h:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    174884 4v8h:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    174885 4v8h:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174886 4v8h:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    174887 4v8h:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    174888 4v8h:AT (3.1) BS01 rna ? GO:0003723 ... P80380 22605777
    174889 4v8h:AX (3.1) BS01 rna ? GO:0005515 ... P0AFX0 22605777
    174890 4v8h:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 22605777
    174891 4v8h:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 22605777
    174892 4v8h:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 22605777
    174893 4v8h:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    174894 4v8h:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    174895 4v8h:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    174896 4v8h:B3 (3.1) BS03 MG ? GO:0003735 ... Q5SHQ6 22605777
    174897 4v8h:B4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    174898 4v8h:B4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    174899 4v8h:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 22605777
    174900 4v8h:B5 (3.1) BS02 ZN ? GO:0003735 ... P80339 22605777
    174901 4v8h:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 22605777
    174902 4v8h:B6 (3.1) BS02 ZN ? GO:0000049 ... P35871 22605777
    174903 4v8h:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 22605777
    174904 4v8h:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    174905 4v8h:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    174906 4v8h:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    174907 4v8h:B9 (3.1) BS03 MG ? GO:0003735 ... Q5SHR2 22605777
    174908 4v8h:BD (3.1) BS01 rna ? GO:0002181 ... P60405 22605777
    174909 4v8h:BD (3.1) BS02 rna ? GO:0002181 ... P60405 22605777
    174910 4v8h:BD (3.1) BS03 MG ? GO:0002181 ... P60405 22605777
    174911 4v8h:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    174912 4v8h:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    174913 4v8h:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    174914 4v8h:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    174915 4v8h:BG (3.1) BS03 MG ? GO:0000049 ... Q5SHQ0 22605777
    174916 4v8h:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174917 4v8h:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    174918 4v8h:BN (3.1) BS01 rna ? GO:0003729 ... P60488 22605777
    174919 4v8h:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    174920 4v8h:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    174921 4v8h:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    174922 4v8h:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 22605777
    174923 4v8h:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 22605777
    174924 4v8h:BQ (3.1) BS03 MG ? GO:0000049 ... P60489 22605777
    174925 4v8h:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    174926 4v8h:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    174927 4v8h:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    174928 4v8h:BT (3.1) BS01 rna ? GO:0003735 ... P60490 22605777
    174929 4v8h:BT (3.1) BS02 rna ? GO:0003735 ... P60490 22605777
    174930 4v8h:BU (3.1) BS01 rna ? GO:0000027 ... P60491 22605777
    174931 4v8h:BV (3.1) BS01 rna ? GO:0003723 ... P60492 22605777
    174932 4v8h:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    174933 4v8h:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    174934 4v8h:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    174935 4v8h:BY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    174936 4v8h:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    174937 4v8h:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    174938 4v8h:CB (3.1) BS01 rna ? GO:0003735 ... P80371 22605777
    174939 4v8h:CC (3.1) BS01 rna ? GO:0003676 ... P80372 22605777
    174940 4v8h:CD (3.1) BS01 rna ? GO:0003723 ... P80373 22605777
    174941 4v8h:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 22605777
    174942 4v8h:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    174943 4v8h:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    174944 4v8h:CG (3.1) BS01 rna ? GO:0000028 ... P17291 22605777
    174945 4v8h:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174946 4v8h:CI (3.1) BS01 rna ? GO:0000049 ... P80374 22605777
    174947 4v8h:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    174948 4v8h:CK (3.1) BS01 rna ? GO:0003735 ... P80376 22605777
    174949 4v8h:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    174950 4v8h:CM (3.1) BS01 rna ? GO:0000049 ... P80377 22605777
    174951 4v8h:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174952 4v8h:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 22605777
    174953 4v8h:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    174954 4v8h:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    174955 4v8h:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    174956 4v8h:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174957 4v8h:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    174958 4v8h:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    174959 4v8h:CT (3.1) BS01 rna ? GO:0003723 ... P80380 22605777
    174960 4v8h:CX (3.1) BS01 rna ? GO:0005515 ... P0AFX0 22605777
    174961 4v8h:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 22605777
    174962 4v8h:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 22605777
    174963 4v8h:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 22605777
    174964 4v8h:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    174965 4v8h:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    174966 4v8h:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    174967 4v8h:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    174968 4v8h:D4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    174969 4v8h:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 22605777
    174970 4v8h:D5 (3.1) BS02 ZN ? GO:0003735 ... P80339 22605777
    174971 4v8h:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 22605777
    174972 4v8h:D6 (3.1) BS02 ZN ? GO:0000049 ... P35871 22605777
    174973 4v8h:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 22605777
    174974 4v8h:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    174975 4v8h:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    174976 4v8h:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    174977 4v8h:DD (3.1) BS01 rna ? GO:0002181 ... P60405 22605777
    174978 4v8h:DD (3.1) BS02 rna ? GO:0002181 ... P60405 22605777
    174979 4v8h:DD (3.1) BS03 MG ? GO:0002181 ... P60405 22605777
    174980 4v8h:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    174981 4v8h:DE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 22605777
    174982 4v8h:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    174983 4v8h:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    174984 4v8h:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    174985 4v8h:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 22605777
    174986 4v8h:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    174987 4v8h:DN (3.1) BS01 rna ? GO:0003729 ... P60488 22605777
    174988 4v8h:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    174989 4v8h:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    174990 4v8h:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    174991 4v8h:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 22605777
    174992 4v8h:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 22605777
    174993 4v8h:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    174994 4v8h:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    174995 4v8h:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    174996 4v8h:DT (3.1) BS01 rna ? GO:0003735 ... P60490 22605777
    174997 4v8h:DT (3.1) BS02 rna ? GO:0003735 ... P60490 22605777
    174998 4v8h:DU (3.1) BS01 rna ? GO:0000027 ... P60491 22605777
    174999 4v8h:DV (3.1) BS01 rna ? GO:0003723 ... P60492 22605777
    175000 4v8h:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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