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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174601 4v8f:AE (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    174602 4v8f:AF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174603 4v8f:AF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    174604 4v8f:AF (3.3) BS03 OHX ? GO:0003735 ... Q5SHN9 22437501
    174605 4v8f:AG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174606 4v8f:AG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174607 4v8f:AG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174608 4v8f:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174609 4v8f:AK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174610 4v8f:AM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    174611 4v8f:AN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174612 4v8f:AN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174613 4v8f:AO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174614 4v8f:AO (3.3) BS02 OHX ? GO:0003735 ... Q5SHQ7 22437501
    174615 4v8f:AP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    174616 4v8f:AP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    174617 4v8f:AQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174618 4v8f:AQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174619 4v8f:AR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    174620 4v8f:AR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    174621 4v8f:AS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174622 4v8f:AT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174623 4v8f:AU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174624 4v8f:AV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174625 4v8f:AW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174626 4v8f:AX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174627 4v8f:AX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174628 4v8f:AZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    174629 4v8f:BE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    174630 4v8f:BF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    174631 4v8f:BG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    174632 4v8f:BG (3.3) BS02 ZN ? GO:0003723 ... P80373 22437501
    174633 4v8f:BG (3.3) BS03 OHX ? GO:0003723 ... P80373 22437501
    174634 4v8f:BH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174635 4v8f:BH (3.3) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    174636 4v8f:BI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174637 4v8f:BJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    174638 4v8f:BJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    174639 4v8f:BK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174640 4v8f:BL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    174641 4v8f:BL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    174642 4v8f:BM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174643 4v8f:BN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    174644 4v8f:BN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    174645 4v8f:BO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174646 4v8f:BO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    174647 4v8f:BP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    174648 4v8f:BQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174649 4v8f:BQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174650 4v8f:BR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174651 4v8f:BR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174652 4v8f:BR (3.3) BS03 OHX ? GO:0003735 ... Q5SJ76 22437501
    174653 4v8f:BS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174654 4v8f:BT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174655 4v8f:BU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174656 4v8f:BV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174657 4v8f:BW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    174658 4v8f:CE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    174659 4v8f:CF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    174660 4v8f:CF (3.3) BS02 rna ? GO:0003676 ... P80372 22437501
    174661 4v8f:CG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    174662 4v8f:CG (3.3) BS02 OHX ? GO:0003723 ... P80373 22437501
    174663 4v8f:CG (3.3) BS03 ZN ? GO:0003723 ... P80373 22437501
    174664 4v8f:CH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174665 4v8f:CH (3.3) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    174666 4v8f:CI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174667 4v8f:CJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    174668 4v8f:CJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    174669 4v8f:CK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174670 4v8f:CL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    174671 4v8f:CL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    174672 4v8f:CM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174673 4v8f:CN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    174674 4v8f:CN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    174675 4v8f:CO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174676 4v8f:CP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    174677 4v8f:CP (3.3) BS02 rna ? GO:0000049 ... P80377 22437501
    174678 4v8f:CP (3.3) BS03 rna ? GO:0000049 ... P80377 22437501
    174679 4v8f:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174680 4v8f:CQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174681 4v8f:CR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174682 4v8f:CR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174683 4v8f:CS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174684 4v8f:CT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174685 4v8f:CU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174686 4v8f:CV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174687 4v8f:CW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    174688 4v8f:D0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174689 4v8f:D1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    174690 4v8f:D2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    174691 4v8f:D3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    174692 4v8f:D3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    174693 4v8f:D3 (3.3) BS03 OHX ? GO:0003735 ... P60493 22437501
    174694 4v8f:D4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174695 4v8f:D5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    174696 4v8f:D6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    174697 4v8f:D6 (3.3) BS02 OHX ? GO:0000049 ... P35871 22437501
    174698 4v8f:D7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    174699 4v8f:D8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174700 4v8f:D8 (3.3) BS02 OHX ? GO:0003735 ... Q5SKU1 22437501
    174701 4v8f:DD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    174702 4v8f:DD (3.3) BS02 MG ? GO:0002181 ... P60405 22437501
    174703 4v8f:DE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174704 4v8f:DF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174705 4v8f:DF (3.3) BS02 OHX ? GO:0003735 ... Q5SHN9 22437501
    174706 4v8f:DG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174707 4v8f:DG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174708 4v8f:DG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174709 4v8f:DH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174710 4v8f:DK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174711 4v8f:DK (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    174712 4v8f:DM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    174713 4v8f:DN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174714 4v8f:DN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174715 4v8f:DO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174716 4v8f:DP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    174717 4v8f:DP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    174718 4v8f:DP (3.3) BS03 rna ? GO:0000049 ... P60489 22437501
    174719 4v8f:DQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174720 4v8f:DQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174721 4v8f:DR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    174722 4v8f:DR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    174723 4v8f:DS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174724 4v8f:DT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174725 4v8f:DU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174726 4v8f:DV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174727 4v8f:DV (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    174728 4v8f:DW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174729 4v8f:DX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174730 4v8f:DX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174731 4v8f:DZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    174732 4v8g:AB (3.0) BS01 rna ? GO:0003735 ... P80371 22605777
    174733 4v8g:AC (3.0) BS01 rna ? GO:0003676 ... P80372 22605777
    174734 4v8g:AD (3.0) BS01 rna ? GO:0003723 ... P80373 22605777
    174735 4v8g:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 22605777
    174736 4v8g:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22605777
    174737 4v8g:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22605777
    174738 4v8g:AG (3.0) BS01 rna ? GO:0000028 ... P17291 22605777
    174739 4v8g:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174740 4v8g:AI (3.0) BS01 rna ? GO:0000049 ... P80374 22605777
    174741 4v8g:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22605777
    174742 4v8g:AK (3.0) BS01 rna ? GO:0003735 ... P80376 22605777
    174743 4v8g:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22605777
    174744 4v8g:AM (3.0) BS01 rna ? GO:0000049 ... P80377 22605777
    174745 4v8g:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174746 4v8g:AN (3.0) BS02 ZN N/A GO:0003735 ... N/A 22605777
    174747 4v8g:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22605777
    174748 4v8g:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22605777
    174749 4v8g:AO (3.0) BS03 MG ? GO:0003735 ... Q5SJ76 22605777
    174750 4v8g:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22605777
    174751 4v8g:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174752 4v8g:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22605777
    174753 4v8g:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22605777
    174754 4v8g:AT (3.0) BS01 rna ? GO:0003723 ... P80380 22605777
    174755 4v8g:AV (3.0) BS01 rna ? GO:0005737 ... P0AFW2 22605777
    174756 4v8g:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 22605777
    174757 4v8g:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 22605777
    174758 4v8g:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 22605777
    174759 4v8g:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22605777
    174760 4v8g:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22605777
    174761 4v8g:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22605777
    174762 4v8g:B3 (3.0) BS03 MG ? GO:0003735 ... Q5SHQ6 22605777
    174763 4v8g:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22605777
    174764 4v8g:B4 (3.0) BS02 ZN ? GO:0003735 ... Q5SJE1 22605777
    174765 4v8g:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 22605777
    174766 4v8g:B5 (3.0) BS02 ZN ? GO:0003735 ... P80339 22605777
    174767 4v8g:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 22605777
    174768 4v8g:B6 (3.0) BS02 ZN ? GO:0000049 ... P35871 22605777
    174769 4v8g:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 22605777
    174770 4v8g:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22605777
    174771 4v8g:B9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 22605777
    174772 4v8g:B9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 22605777
    174773 4v8g:BD (3.0) BS01 rna ? GO:0002181 ... P60405 22605777
    174774 4v8g:BD (3.0) BS02 rna ? GO:0002181 ... P60405 22605777
    174775 4v8g:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22605777
    174776 4v8g:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 22605777
    174777 4v8g:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22605777
    174778 4v8g:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22605777
    174779 4v8g:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22605777
    174780 4v8g:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 22605777
    174781 4v8g:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22605777
    174782 4v8g:BN (3.0) BS01 rna ? GO:0003729 ... P60488 22605777
    174783 4v8g:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22605777
    174784 4v8g:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22605777
    174785 4v8g:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22605777
    174786 4v8g:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 22605777
    174787 4v8g:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 22605777
    174788 4v8g:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22605777
    174789 4v8g:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22605777
    174790 4v8g:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22605777
    174791 4v8g:BT (3.0) BS01 rna ? GO:0003735 ... P60490 22605777
    174792 4v8g:BT (3.0) BS02 rna ? GO:0003735 ... P60490 22605777
    174793 4v8g:BU (3.0) BS01 rna ? GO:0000027 ... P60491 22605777
    174794 4v8g:BV (3.0) BS01 rna ? GO:0003723 ... P60492 22605777
    174795 4v8g:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22605777
    174796 4v8g:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22605777
    174797 4v8g:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22605777
    174798 4v8g:BY (3.0) BS02 ZN ? GO:0003723 ... Q5SHP9 22605777
    174799 4v8g:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22605777
    174800 4v8g:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22605777
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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