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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174401 4v8d:D3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    174402 4v8d:D3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    174403 4v8d:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174404 4v8d:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    174405 4v8d:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    174406 4v8d:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    174407 4v8d:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174408 4v8d:DD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    174409 4v8d:DD (3.0) BS02 MG ? GO:0002181 ... P60405 22437501
    174410 4v8d:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174411 4v8d:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174412 4v8d:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174413 4v8d:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174414 4v8d:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174415 4v8d:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174416 4v8d:DK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174417 4v8d:DK (3.0) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    174418 4v8d:DM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    174419 4v8d:DN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174420 4v8d:DN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174421 4v8d:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174422 4v8d:DP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    174423 4v8d:DP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    174424 4v8d:DP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    174425 4v8d:DQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174426 4v8d:DQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174427 4v8d:DR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    174428 4v8d:DR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    174429 4v8d:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174430 4v8d:DT (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174431 4v8d:DU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174432 4v8d:DV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174433 4v8d:DV (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    174434 4v8d:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174435 4v8d:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174436 4v8d:DX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174437 4v8d:DZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    174438 4v8e:A0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174439 4v8e:A1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    174440 4v8e:A2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    174441 4v8e:A3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    174442 4v8e:A3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    174443 4v8e:A3 (3.3) BS03 OHX ? GO:0003735 ... P60493 22437501
    174444 4v8e:A4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174445 4v8e:A5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    174446 4v8e:A6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    174447 4v8e:A6 (3.3) BS02 OHX ? GO:0000049 ... P35871 22437501
    174448 4v8e:A7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    174449 4v8e:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174450 4v8e:A8 (3.3) BS02 OHX ? GO:0003735 ... Q5SKU1 22437501
    174451 4v8e:AD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    174452 4v8e:AD (3.3) BS02 MG ? GO:0002181 ... P60405 22437501
    174453 4v8e:AE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174454 4v8e:AE (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    174455 4v8e:AF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174456 4v8e:AF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    174457 4v8e:AF (3.3) BS03 OHX ? GO:0003735 ... Q5SHN9 22437501
    174458 4v8e:AG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174459 4v8e:AG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174460 4v8e:AG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174461 4v8e:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174462 4v8e:AK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174463 4v8e:AM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    174464 4v8e:AN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174465 4v8e:AN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174466 4v8e:AO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174467 4v8e:AO (3.3) BS02 OHX ? GO:0003735 ... Q5SHQ7 22437501
    174468 4v8e:AO (3.3) BS03 OHX ? GO:0003735 ... Q5SHQ7 22437501
    174469 4v8e:AP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    174470 4v8e:AP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    174471 4v8e:AQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174472 4v8e:AQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174473 4v8e:AR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    174474 4v8e:AR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    174475 4v8e:AS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174476 4v8e:AT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174477 4v8e:AU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174478 4v8e:AV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174479 4v8e:AW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174480 4v8e:AX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174481 4v8e:AX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174482 4v8e:AZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    174483 4v8e:BE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    174484 4v8e:BF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    174485 4v8e:BG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    174486 4v8e:BG (3.3) BS02 ZN ? GO:0003723 ... P80373 22437501
    174487 4v8e:BG (3.3) BS03 OHX ? GO:0003723 ... P80373 22437501
    174488 4v8e:BH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174489 4v8e:BI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174490 4v8e:BJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    174491 4v8e:BJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    174492 4v8e:BK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174493 4v8e:BL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    174494 4v8e:BL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    174495 4v8e:BM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174496 4v8e:BN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    174497 4v8e:BN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    174498 4v8e:BO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174499 4v8e:BP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    174500 4v8e:BQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174501 4v8e:BQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174502 4v8e:BR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174503 4v8e:BR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174504 4v8e:BR (3.3) BS03 OHX ? GO:0003735 ... Q5SJ76 22437501
    174505 4v8e:BS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174506 4v8e:BT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174507 4v8e:BU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174508 4v8e:BV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174509 4v8e:BW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    174510 4v8e:C0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174511 4v8e:C1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    174512 4v8e:C2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    174513 4v8e:C3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    174514 4v8e:C3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    174515 4v8e:C3 (3.3) BS03 OHX ? GO:0003735 ... P60493 22437501
    174516 4v8e:C4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174517 4v8e:C5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    174518 4v8e:C5 (3.3) BS02 OHX ? GO:0003735 ... P80339 22437501
    174519 4v8e:C6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    174520 4v8e:C6 (3.3) BS02 OHX ? GO:0000049 ... P35871 22437501
    174521 4v8e:C7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    174522 4v8e:C8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174523 4v8e:C8 (3.3) BS02 OHX ? GO:0003735 ... Q5SKU1 22437501
    174524 4v8e:CD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    174525 4v8e:CD (3.3) BS02 MG ? GO:0002181 ... P60405 22437501
    174526 4v8e:CE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174527 4v8e:CF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174528 4v8e:CF (3.3) BS02 OHX ? GO:0003735 ... Q5SHN9 22437501
    174529 4v8e:CG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174530 4v8e:CG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174531 4v8e:CG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174532 4v8e:CH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174533 4v8e:CK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174534 4v8e:CK (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    174535 4v8e:CM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    174536 4v8e:CN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174537 4v8e:CN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174538 4v8e:CO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174539 4v8e:CO (3.3) BS02 OHX ? GO:0003735 ... Q5SHQ7 22437501
    174540 4v8e:CP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    174541 4v8e:CP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    174542 4v8e:CP (3.3) BS03 rna ? GO:0000049 ... P60489 22437501
    174543 4v8e:CQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174544 4v8e:CQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174545 4v8e:CR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    174546 4v8e:CR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    174547 4v8e:CS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174548 4v8e:CT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174549 4v8e:CU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174550 4v8e:CV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174551 4v8e:CV (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    174552 4v8e:CW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174553 4v8e:CX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174554 4v8e:CX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174555 4v8e:CZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    174556 4v8e:CZ (3.3) BS02 OHX ? GO:0003735 ... P60494 22437501
    174557 4v8e:DE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    174558 4v8e:DF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    174559 4v8e:DF (3.3) BS02 rna ? GO:0003676 ... P80372 22437501
    174560 4v8e:DG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    174561 4v8e:DG (3.3) BS02 ZN ? GO:0003723 ... P80373 22437501
    174562 4v8e:DG (3.3) BS03 OHX ? GO:0003723 ... P80373 22437501
    174563 4v8e:DH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174564 4v8e:DH (3.3) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    174565 4v8e:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174566 4v8e:DJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    174567 4v8e:DJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    174568 4v8e:DK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174569 4v8e:DK (3.3) BS02 OHX N/A GO:0003735 ... N/A 22437501
    174570 4v8e:DL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    174571 4v8e:DL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    174572 4v8e:DM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174573 4v8e:DN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    174574 4v8e:DN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    174575 4v8e:DO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174576 4v8e:DP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    174577 4v8e:DQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174578 4v8e:DQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174579 4v8e:DR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174580 4v8e:DR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174581 4v8e:DR (3.3) BS03 OHX ? GO:0003735 ... Q5SJ76 22437501
    174582 4v8e:DS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174583 4v8e:DT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174584 4v8e:DU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174585 4v8e:DV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174586 4v8e:DW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    174587 4v8f:A0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174588 4v8f:A1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    174589 4v8f:A2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    174590 4v8f:A3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    174591 4v8f:A3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    174592 4v8f:A3 (3.3) BS03 OHX ? GO:0003735 ... P60493 22437501
    174593 4v8f:A4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174594 4v8f:A5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    174595 4v8f:A6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    174596 4v8f:A7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    174597 4v8f:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174598 4v8f:AD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    174599 4v8f:AD (3.3) BS02 MG ? GO:0002181 ... P60405 22437501
    174600 4v8f:AE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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