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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174201 4v8c:AT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174202 4v8c:AU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174203 4v8c:AV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174204 4v8c:AW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174205 4v8c:AX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174206 4v8c:AX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174207 4v8c:AZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    174208 4v8c:B0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174209 4v8c:B1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    174210 4v8c:B2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    174211 4v8c:B3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    174212 4v8c:B3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    174213 4v8c:B4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174214 4v8c:B5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    174215 4v8c:B6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    174216 4v8c:B7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    174217 4v8c:B8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174218 4v8c:BD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    174219 4v8c:BD (3.3) BS02 rna ? GO:0002181 ... P60405 22437501
    174220 4v8c:BD (3.3) BS03 MG ? GO:0002181 ... P60405 22437501
    174221 4v8c:BE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174222 4v8c:BF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174223 4v8c:BG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174224 4v8c:BG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174225 4v8c:BG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174226 4v8c:BH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174227 4v8c:BK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174228 4v8c:BK (3.3) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    174229 4v8c:BM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    174230 4v8c:BN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174231 4v8c:BN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174232 4v8c:BO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174233 4v8c:BP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    174234 4v8c:BP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    174235 4v8c:BP (3.3) BS03 rna ? GO:0000049 ... P60489 22437501
    174236 4v8c:BQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174237 4v8c:BQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174238 4v8c:BR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    174239 4v8c:BR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    174240 4v8c:BS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174241 4v8c:BT (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174242 4v8c:BU (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174243 4v8c:BV (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174244 4v8c:BV (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    174245 4v8c:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174246 4v8c:BX (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174247 4v8c:BX (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174248 4v8c:BZ (3.3) BS01 rna ? GO:0003735 ... P60494 22437501
    174249 4v8c:CE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    174250 4v8c:CF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    174251 4v8c:CG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    174252 4v8c:CG (3.3) BS02 ZN ? GO:0003723 ... P80373 22437501
    174253 4v8c:CH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174254 4v8c:CI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174255 4v8c:CJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    174256 4v8c:CJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    174257 4v8c:CK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174258 4v8c:CL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    174259 4v8c:CL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    174260 4v8c:CM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174261 4v8c:CN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    174262 4v8c:CN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    174263 4v8c:CO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174264 4v8c:CO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    174265 4v8c:CP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    174266 4v8c:CQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174267 4v8c:CQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174268 4v8c:CR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174269 4v8c:CR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174270 4v8c:CS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174271 4v8c:CT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174272 4v8c:CU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174273 4v8c:CV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174274 4v8c:CW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    174275 4v8c:DE (3.3) BS01 rna ? GO:0003735 ... P80371 22437501
    174276 4v8c:DF (3.3) BS01 rna ? GO:0003676 ... P80372 22437501
    174277 4v8c:DG (3.3) BS01 rna ? GO:0003723 ... P80373 22437501
    174278 4v8c:DG (3.3) BS02 MG ? GO:0003723 ... P80373 22437501
    174279 4v8c:DG (3.3) BS03 ZN ? GO:0003723 ... P80373 22437501
    174280 4v8c:DH (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174281 4v8c:DI (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174282 4v8c:DJ (3.3) BS01 rna ? GO:0000028 ... P17291 22437501
    174283 4v8c:DJ (3.3) BS02 rna ? GO:0000028 ... P17291 22437501
    174284 4v8c:DK (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174285 4v8c:DL (3.3) BS01 rna ? GO:0000049 ... P80374 22437501
    174286 4v8c:DL (3.3) BS02 rna ? GO:0000049 ... P80374 22437501
    174287 4v8c:DM (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174288 4v8c:DN (3.3) BS01 rna ? GO:0003735 ... P80376 22437501
    174289 4v8c:DN (3.3) BS02 MG ? GO:0003735 ... P80376 22437501
    174290 4v8c:DO (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174291 4v8c:DO (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    174292 4v8c:DP (3.3) BS01 rna ? GO:0000049 ... P80377 22437501
    174293 4v8c:DP (3.3) BS02 rna ? GO:0000049 ... P80377 22437501
    174294 4v8c:DQ (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174295 4v8c:DQ (3.3) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174296 4v8c:DR (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174297 4v8c:DR (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174298 4v8c:DS (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174299 4v8c:DT (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174300 4v8c:DU (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174301 4v8c:DV (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174302 4v8c:DW (3.3) BS01 rna ? GO:0003723 ... P80380 22437501
    174303 4v8d:AE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    174304 4v8d:AF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    174305 4v8d:AG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    174306 4v8d:AG (3.0) BS02 MG ? GO:0003723 ... P80373 22437501
    174307 4v8d:AG (3.0) BS03 ZN ? GO:0003723 ... P80373 22437501
    174308 4v8d:AH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174309 4v8d:AH (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    174310 4v8d:AI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174311 4v8d:AJ (3.0) BS01 rna ? GO:0000028 ... P17291 22437501
    174312 4v8d:AJ (3.0) BS02 rna ? GO:0000028 ... P17291 22437501
    174313 4v8d:AK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174314 4v8d:AL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    174315 4v8d:AL (3.0) BS02 rna ? GO:0000049 ... P80374 22437501
    174316 4v8d:AM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174317 4v8d:AN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    174318 4v8d:AN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    174319 4v8d:AO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174320 4v8d:AO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    174321 4v8d:AP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    174322 4v8d:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174323 4v8d:AQ (3.0) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174324 4v8d:AR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174325 4v8d:AR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174326 4v8d:AS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174327 4v8d:AT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174328 4v8d:AU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174329 4v8d:AV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174330 4v8d:AW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    174331 4v8d:B0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174332 4v8d:B1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    174333 4v8d:B2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    174334 4v8d:B3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    174335 4v8d:B3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    174336 4v8d:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174337 4v8d:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    174338 4v8d:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    174339 4v8d:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    174340 4v8d:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174341 4v8d:BD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    174342 4v8d:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174343 4v8d:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    174344 4v8d:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174345 4v8d:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174346 4v8d:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174347 4v8d:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174348 4v8d:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174349 4v8d:BK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174350 4v8d:BM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    174351 4v8d:BN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174352 4v8d:BN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174353 4v8d:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174354 4v8d:BO (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 22437501
    174355 4v8d:BP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    174356 4v8d:BP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    174357 4v8d:BP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    174358 4v8d:BQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174359 4v8d:BQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174360 4v8d:BR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    174361 4v8d:BR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    174362 4v8d:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174363 4v8d:BT (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174364 4v8d:BU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174365 4v8d:BV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174366 4v8d:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174367 4v8d:BX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174368 4v8d:BX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174369 4v8d:BZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    174370 4v8d:CE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    174371 4v8d:CF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    174372 4v8d:CG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    174373 4v8d:CG (3.0) BS02 MG ? GO:0003723 ... P80373 22437501
    174374 4v8d:CG (3.0) BS03 ZN ? GO:0003723 ... P80373 22437501
    174375 4v8d:CH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174376 4v8d:CH (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 22437501
    174377 4v8d:CI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174378 4v8d:CJ (3.0) BS01 rna ? GO:0000028 ... P17291 22437501
    174379 4v8d:CJ (3.0) BS02 rna ? GO:0000028 ... P17291 22437501
    174380 4v8d:CK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174381 4v8d:CL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    174382 4v8d:CL (3.0) BS02 rna ? GO:0000049 ... P80374 22437501
    174383 4v8d:CM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174384 4v8d:CN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    174385 4v8d:CN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    174386 4v8d:CO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174387 4v8d:CO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    174388 4v8d:CP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    174389 4v8d:CP (3.0) BS02 rna ? GO:0000049 ... P80377 22437501
    174390 4v8d:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174391 4v8d:CR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174392 4v8d:CR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174393 4v8d:CS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174394 4v8d:CT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174395 4v8d:CU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174396 4v8d:CV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174397 4v8d:CW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    174398 4v8d:D0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174399 4v8d:D1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    174400 4v8d:D2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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