Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    174001 4v8a:CB (3.2) BS01 rna ? GO:0003735 ... P80371 22240456
    174002 4v8a:CC (3.2) BS01 rna ? GO:0003676 ... P80372 22240456
    174003 4v8a:CD (3.2) BS01 rna ? GO:0003723 ... P80373 22240456
    174004 4v8a:CE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 22240456
    174005 4v8a:CF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 22240456
    174006 4v8a:CG (3.2) BS01 rna ? GO:0000028 ... P17291 22240456
    174007 4v8a:CH (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    174008 4v8a:CI (3.2) BS01 rna ? GO:0000049 ... P80374 22240456
    174009 4v8a:CJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 22240456
    174010 4v8a:CK (3.2) BS01 rna ? GO:0003735 ... P80376 22240456
    174011 4v8a:CL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 22240456
    174012 4v8a:CM (3.2) BS01 rna ? GO:0000049 ... P80377 22240456
    174013 4v8a:CN (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    174014 4v8a:CO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 22240456
    174015 4v8a:CO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 22240456
    174016 4v8a:CP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 22240456
    174017 4v8a:CQ (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    174018 4v8a:CR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 22240456
    174019 4v8a:CS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 22240456
    174020 4v8a:CT (3.2) BS01 rna ? GO:0003723 ... P80380 22240456
    174021 4v8a:DB (3.2) BS01 rna ? GO:0003735 ... P80371 22240456
    174022 4v8a:DC (3.2) BS01 rna ? GO:0003676 ... P80372 22240456
    174023 4v8a:DD (3.2) BS01 rna ? GO:0003723 ... P80373 22240456
    174024 4v8a:DE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 22240456
    174025 4v8a:DF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 22240456
    174026 4v8a:DG (3.2) BS01 rna ? GO:0000028 ... P17291 22240456
    174027 4v8a:DH (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    174028 4v8a:DI (3.2) BS01 rna ? GO:0000049 ... P80374 22240456
    174029 4v8a:DJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 22240456
    174030 4v8a:DK (3.2) BS01 rna ? GO:0003735 ... P80376 22240456
    174031 4v8a:DL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 22240456
    174032 4v8a:DM (3.2) BS01 rna ? GO:0000049 ... P80377 22240456
    174033 4v8a:DN (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    174034 4v8a:DO (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 22240456
    174035 4v8a:DO (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 22240456
    174036 4v8a:DP (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 22240456
    174037 4v8a:DQ (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    174038 4v8a:DR (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 22240456
    174039 4v8a:DS (3.2) BS01 rna ? GO:0000028 ... Q5SHP2 22240456
    174040 4v8a:DT (3.2) BS01 rna ? GO:0003723 ... P80380 22240456
    174041 4v8b:AE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    174042 4v8b:AF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    174043 4v8b:AG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    174044 4v8b:AG (3.0) BS02 ZN ? GO:0003723 ... P80373 22437501
    174045 4v8b:AH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174046 4v8b:AI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174047 4v8b:AJ (3.0) BS01 rna ? GO:0000028 ... P17291 22437501
    174048 4v8b:AJ (3.0) BS02 rna ? GO:0000028 ... P17291 22437501
    174049 4v8b:AK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174050 4v8b:AL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    174051 4v8b:AM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174052 4v8b:AN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    174053 4v8b:AN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    174054 4v8b:AO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174055 4v8b:AO (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    174056 4v8b:AP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    174057 4v8b:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174058 4v8b:AQ (3.0) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174059 4v8b:AR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174060 4v8b:AR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174061 4v8b:AS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174062 4v8b:AT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174063 4v8b:AU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174064 4v8b:AV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174065 4v8b:AW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    174066 4v8b:B0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174067 4v8b:B1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    174068 4v8b:B2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    174069 4v8b:B3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    174070 4v8b:B3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    174071 4v8b:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174072 4v8b:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    174073 4v8b:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    174074 4v8b:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    174075 4v8b:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174076 4v8b:BD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    174077 4v8b:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174078 4v8b:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    174079 4v8b:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174080 4v8b:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    174081 4v8b:BF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 22437501
    174082 4v8b:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174083 4v8b:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174084 4v8b:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174085 4v8b:BK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174086 4v8b:BM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    174087 4v8b:BN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174088 4v8b:BN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174089 4v8b:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174090 4v8b:BP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    174091 4v8b:BP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    174092 4v8b:BP (3.0) BS03 rna ? GO:0000049 ... P60489 22437501
    174093 4v8b:BQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174094 4v8b:BQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174095 4v8b:BR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    174096 4v8b:BR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    174097 4v8b:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174098 4v8b:BT (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174099 4v8b:BU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174100 4v8b:BV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174101 4v8b:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174102 4v8b:BX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174103 4v8b:BX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174104 4v8b:BZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    174105 4v8b:CE (3.0) BS01 rna ? GO:0003735 ... P80371 22437501
    174106 4v8b:CF (3.0) BS01 rna ? GO:0003676 ... P80372 22437501
    174107 4v8b:CG (3.0) BS01 rna ? GO:0003723 ... P80373 22437501
    174108 4v8b:CG (3.0) BS02 ZN ? GO:0003723 ... P80373 22437501
    174109 4v8b:CH (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    174110 4v8b:CI (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    174111 4v8b:CJ (3.0) BS01 rna ? GO:0000028 ... P17291 22437501
    174112 4v8b:CJ (3.0) BS02 rna ? GO:0000028 ... P17291 22437501
    174113 4v8b:CK (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174114 4v8b:CL (3.0) BS01 rna ? GO:0000049 ... P80374 22437501
    174115 4v8b:CM (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    174116 4v8b:CN (3.0) BS01 rna ? GO:0003735 ... P80376 22437501
    174117 4v8b:CN (3.0) BS02 MG ? GO:0003735 ... P80376 22437501
    174118 4v8b:CO (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    174119 4v8b:CP (3.0) BS01 rna ? GO:0000049 ... P80377 22437501
    174120 4v8b:CP (3.0) BS02 rna ? GO:0000049 ... P80377 22437501
    174121 4v8b:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174122 4v8b:CQ (3.0) BS02 ZN N/A GO:0003735 ... N/A 22437501
    174123 4v8b:CR (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 22437501
    174124 4v8b:CR (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 22437501
    174125 4v8b:CS (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 22437501
    174126 4v8b:CT (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174127 4v8b:CU (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 22437501
    174128 4v8b:CV (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 22437501
    174129 4v8b:CW (3.0) BS01 rna ? GO:0003723 ... P80380 22437501
    174130 4v8b:D0 (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174131 4v8b:D1 (3.0) BS01 rna ? GO:0000027 ... P60491 22437501
    174132 4v8b:D2 (3.0) BS01 rna ? GO:0003723 ... P60492 22437501
    174133 4v8b:D3 (3.0) BS01 rna ? GO:0003735 ... P60493 22437501
    174134 4v8b:D3 (3.0) BS02 rna ? GO:0003735 ... P60493 22437501
    174135 4v8b:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 22437501
    174136 4v8b:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 22437501
    174137 4v8b:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 22437501
    174138 4v8b:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174139 4v8b:DD (3.0) BS01 rna ? GO:0002181 ... P60405 22437501
    174140 4v8b:DD (3.0) BS02 MG ? GO:0002181 ... P60405 22437501
    174141 4v8b:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174142 4v8b:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174143 4v8b:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174144 4v8b:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174145 4v8b:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174146 4v8b:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 22437501
    174147 4v8b:DK (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174148 4v8b:DK (3.0) BS02 rna ? GO:0003735 ... Q5SLQ1 22437501
    174149 4v8b:DM (3.0) BS01 rna ? GO:0003729 ... P60488 22437501
    174150 4v8b:DN (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174151 4v8b:DN (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174152 4v8b:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174153 4v8b:DP (3.0) BS01 rna ? GO:0000049 ... P60489 22437501
    174154 4v8b:DP (3.0) BS02 rna ? GO:0000049 ... P60489 22437501
    174155 4v8b:DQ (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174156 4v8b:DQ (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174157 4v8b:DR (3.0) BS01 rna ? GO:0003735 ... P60490 22437501
    174158 4v8b:DR (3.0) BS02 rna ? GO:0003735 ... P60490 22437501
    174159 4v8b:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    174160 4v8b:DT (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    174161 4v8b:DU (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    174162 4v8b:DV (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 22437501
    174163 4v8b:DV (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 22437501
    174164 4v8b:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    174165 4v8b:DX (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    174166 4v8b:DX (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 22437501
    174167 4v8b:DZ (3.0) BS01 rna ? GO:0003735 ... P60494 22437501
    174168 4v8c:A0 (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    174169 4v8c:A1 (3.3) BS01 rna ? GO:0000027 ... P60491 22437501
    174170 4v8c:A2 (3.3) BS01 rna ? GO:0003723 ... P60492 22437501
    174171 4v8c:A3 (3.3) BS01 rna ? GO:0003735 ... P60493 22437501
    174172 4v8c:A3 (3.3) BS02 rna ? GO:0003735 ... P60493 22437501
    174173 4v8c:A4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    174174 4v8c:A5 (3.3) BS01 rna ? GO:0003735 ... P80339 22437501
    174175 4v8c:A6 (3.3) BS01 rna ? GO:0000049 ... P35871 22437501
    174176 4v8c:A7 (3.3) BS01 rna ? GO:0003735 ... P80340 22437501
    174177 4v8c:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    174178 4v8c:AD (3.3) BS01 rna ? GO:0002181 ... P60405 22437501
    174179 4v8c:AE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    174180 4v8c:AE (3.3) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    174181 4v8c:AF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    174182 4v8c:AF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    174183 4v8c:AF (3.3) BS03 MG ? GO:0003735 ... Q5SHN9 22437501
    174184 4v8c:AG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    174185 4v8c:AG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    174186 4v8c:AG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    174187 4v8c:AH (3.3) BS01 rna N/A GO:0003735 ... N/A 22437501
    174188 4v8c:AK (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    174189 4v8c:AM (3.3) BS01 rna ? GO:0003729 ... P60488 22437501
    174190 4v8c:AN (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    174191 4v8c:AN (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    174192 4v8c:AO (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    174193 4v8c:AP (3.3) BS01 rna ? GO:0000049 ... P60489 22437501
    174194 4v8c:AP (3.3) BS02 rna ? GO:0000049 ... P60489 22437501
    174195 4v8c:AP (3.3) BS03 rna ? GO:0000049 ... P60489 22437501
    174196 4v8c:AQ (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    174197 4v8c:AQ (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    174198 4v8c:AR (3.3) BS01 rna ? GO:0003735 ... P60490 22437501
    174199 4v8c:AR (3.3) BS02 rna ? GO:0003735 ... P60490 22437501
    174200 4v8c:AS (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417