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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    173801 4v88:DT (3.0) BS05 MG ? GO:0002181 ... Q02753 22096102
    173802 4v88:DU (3.0) BS01 rna ? GO:0002181 ... P05749 22096102
    173803 4v88:DV (3.0) BS01 rna ? GO:0002181 ... P0CX41 22096102
    173804 4v88:DV (3.0) BS02 rna ? GO:0002181 ... P0CX41 22096102
    173805 4v88:DV (3.0) BS03 MG ? GO:0002181 ... P0CX41 22096102
    173806 4v88:DW (3.0) BS01 rna ? GO:0002181 ... P04449 22096102
    173807 4v88:DW (3.0) BS02 rna ? GO:0002181 ... P04449 22096102
    173808 4v88:DW (3.0) BS03 MG ? GO:0002181 ... P04449 22096102
    173809 4v88:DX (3.0) BS01 rna ? GO:0000027 ... P04456 22096102
    173810 4v88:DX (3.0) BS02 rna ? GO:0000027 ... P04456 22096102
    173811 4v88:DY (3.0) BS01 rna ? GO:0002181 ... P05743 22096102
    173812 4v88:DY (3.0) BS02 rna ? GO:0002181 ... P05743 22096102
    173813 4v88:DY (3.0) BS03 OHX ? GO:0002181 ... P05743 22096102
    173814 4v88:DZ (3.0) BS01 rna ? GO:0002181 ... P0C2H6 22096102
    173815 4v88:Da (3.0) BS01 rna ? GO:0002181 ... P02406 22096102
    173816 4v88:Da (3.0) BS02 OHX ? GO:0002181 ... P02406 22096102
    173817 4v88:Da (3.0) BS03 MG ? GO:0002181 ... P02406 22096102
    173818 4v88:Da (3.0) BS04 MG ? GO:0002181 ... P02406 22096102
    173819 4v88:Db (3.0) BS01 rna ? GO:0002181 ... P05747 22096102
    173820 4v88:Db (3.0) BS02 OHX ? GO:0002181 ... P05747 22096102
    173821 4v88:Db (3.0) BS03 MG ? GO:0002181 ... P05747 22096102
    173822 4v88:Dc (3.0) BS01 rna ? GO:0002181 ... P14120 22096102
    173823 4v88:Dd (3.0) BS01 rna ? GO:0002181 ... P0C2H8 22096102
    173824 4v88:Dd (3.0) BS02 MG ? GO:0002181 ... P0C2H8 22096102
    173825 4v88:De (3.0) BS01 rna ? GO:0002181 ... P38061 22096102
    173826 4v88:De (3.0) BS02 MG ? GO:0002181 ... P38061 22096102
    173827 4v88:De (3.0) BS03 MG ? GO:0002181 ... P38061 22096102
    173828 4v88:De (3.0) BS04 MG ? GO:0002181 ... P38061 22096102
    173829 4v88:Df (3.0) BS01 rna ? GO:0000027 ... P05744 22096102
    173830 4v88:Df (3.0) BS02 MG ? GO:0000027 ... P05744 22096102
    173831 4v88:Df (3.0) BS03 OHX ? GO:0000027 ... P05744 22096102
    173832 4v88:Df (3.0) BS04 MG ? GO:0000027 ... P05744 22096102
    173833 4v88:Df (3.0) BS05 MG ? GO:0000027 ... P05744 22096102
    173834 4v88:Dg (3.0) BS01 rna ? GO:0002181 ... P87262 22096102
    173835 4v88:Dg (3.0) BS02 MG ? GO:0002181 ... P87262 22096102
    173836 4v88:Dg (3.0) BS03 MG ? GO:0002181 ... P87262 22096102
    173837 4v88:Dh (3.0) BS01 rna ? GO:0000463 ... P0CX84 22096102
    173838 4v88:Dh (3.0) BS02 rna ? GO:0000463 ... P0CX84 22096102
    173839 4v88:Di (3.0) BS01 rna ? GO:0002181 ... P05745 22096102
    173840 4v88:Di (3.0) BS02 MG ? GO:0002181 ... P05745 22096102
    173841 4v88:Dj (3.0) BS01 rna ? GO:0000448 ... P49166 22096102
    173842 4v88:Dj (3.0) BS02 rna ? GO:0000448 ... P49166 22096102
    173843 4v88:Dj (3.0) BS03 OHX ? GO:0000448 ... P49166 22096102
    173844 4v88:Dj (3.0) BS04 OHX ? GO:0000448 ... P49166 22096102
    173845 4v88:Dj (3.0) BS05 MG ? GO:0000448 ... P49166 22096102
    173846 4v88:Dj (3.0) BS06 MG ? GO:0000448 ... P49166 22096102
    173847 4v88:Dj (3.0) BS07 OHX ? GO:0000448 ... P49166 22096102
    173848 4v88:Dj (3.0) BS08 ZN ? GO:0000448 ... P49166 22096102
    173849 4v88:Dk (3.0) BS01 rna ? GO:0002181 ... P49167 22096102
    173850 4v88:Dl (3.0) BS01 rna ? GO:0002181 ... P04650 22096102
    173851 4v88:Dl (3.0) BS02 rna ? GO:0002181 ... P04650 22096102
    173852 4v88:Dl (3.0) BS03 MG ? GO:0002181 ... P04650 22096102
    173853 4v88:Dm (3.0) BS01 rna ? GO:0000027 ... P0CH08 22096102
    173854 4v88:Dm (3.0) BS02 MG ? GO:0000027 ... P0CH08 22096102
    173855 4v88:Dm (3.0) BS03 ZN ? GO:0000027 ... P0CH08 22096102
    173856 4v88:Do (3.0) BS01 rna ? GO:0002181 ... P0CX27 22096102
    173857 4v88:Do (3.0) BS02 OHX ? GO:0002181 ... P0CX27 22096102
    173858 4v88:Do (3.0) BS03 ZN ? GO:0002181 ... P0CX27 22096102
    173859 4v88:Dp (3.0) BS01 rna ? GO:0002181 ... P0CX25 22096102
    173860 4v88:Dp (3.0) BS02 rna ? GO:0002181 ... P0CX25 22096102
    173861 4v88:Dp (3.0) BS03 MG ? GO:0002181 ... P0CX25 22096102
    173862 4v88:Dp (3.0) BS04 ZN ? GO:0002181 ... P0CX25 22096102
    173863 4v88:Dq (3.0) BS01 rna ? GO:0000027 ... P05317 22096102
    173864 4v88:Dq (3.0) BS02 MG ? GO:0000027 ... P05317 22096102
    173865 4v89:AB (3.7) BS01 rna ? GO:0000028 ... P0A7V0 22187675
    173866 4v89:AC (3.7) BS01 rna ? GO:0000028 ... P0A7V3 22187675
    173867 4v89:AD (3.7) BS01 rna ? GO:0000028 ... P0A7V8 22187675
    173868 4v89:AE (3.7) BS01 rna ? GO:0000028 ... P0A7W1 22187675
    173869 4v89:AF (3.7) BS01 rna ? GO:0002181 ... P02358 22187675
    173870 4v89:AG (3.7) BS01 rna ? GO:0000028 ... P02359 22187675
    173871 4v89:AH (3.7) BS01 rna ? GO:0000028 ... P0A7W7 22187675
    173872 4v89:AI (3.7) BS01 rna ? GO:0000049 ... P0A7X3 22187675
    173873 4v89:AJ (3.7) BS01 rna ? GO:0000049 ... P0A7R5 22187675
    173874 4v89:AK (3.7) BS01 rna ? GO:0002181 ... P0A7R9 22187675
    173875 4v89:AL (3.7) BS01 rna ? GO:0000049 ... P0A7S3 22187675
    173876 4v89:AM (3.7) BS01 rna ? GO:0000049 ... P0A7S9 22187675
    173877 4v89:AN (3.7) BS01 rna ? GO:0000028 ... P0AG59 22187675
    173878 4v89:AO (3.7) BS01 rna ? GO:0000028 ... P0ADZ4 22187675
    173879 4v89:AO (3.7) BS02 rna ? GO:0000028 ... P0ADZ4 22187675
    173880 4v89:AP (3.7) BS01 rna ? GO:0000028 ... P0A7T3 22187675
    173881 4v89:AQ (3.7) BS01 rna ? GO:0000028 ... P0AG63 22187675
    173882 4v89:AR (3.7) BS01 rna ? GO:0002181 ... P0A7T7 22187675
    173883 4v89:AS (3.7) BS01 rna ? GO:0000028 ... P0A7U3 22187675
    173884 4v89:AT (3.7) BS01 rna ? GO:0000028 ... P0A7U7 22187675
    173885 4v89:AU (3.7) BS01 rna ? GO:0000028 ... P68679 22187675
    173886 4v89:AW (3.7) BS01 rna ? GO:0003924 ... P0A7I4 22187675
    173887 4v89:AW (3.7) BS02 rna ? GO:0003924 ... P0A7I4 22187675
    173888 4v89:AW (3.7) BS03 GNP ? GO:0003924 ... P0A7I4 22187675
    173889 4v89:AW (3.7) BS04 MG ? GO:0003924 ... P0A7I4 22187675
    173890 4v89:B0 (3.7) BS01 rna ? GO:0000027 ... P0A7L8 22187675
    173891 4v89:B1 (3.7) BS01 rna ? GO:0000027 ... P0A7M2 22187675
    173892 4v89:B2 (3.7) BS01 rna ? GO:0000027 ... P0A7M6 22187675
    173893 4v89:B3 (3.7) BS01 rna ? GO:0000027 ... P0AG51 22187675
    173894 4v89:B3 (3.7) BS02 rna ? GO:0000027 ... P0AG51 22187675
    173895 4v89:B4 (3.7) BS01 rna ? GO:0000027 ... P0A7N4 22187675
    173896 4v89:B5 (3.7) BS01 rna ? GO:0000027 ... P0A7N9 22187675
    173897 4v89:B6 (3.7) BS01 rna ? GO:0002181 ... P0A7P5 22187675
    173898 4v89:B7 (3.7) BS01 rna ? GO:0002181 ... P0A7Q1 22187675
    173899 4v89:B8 (3.7) BS01 rna ? GO:0002181 ... P0A7Q6 22187675
    173900 4v89:BC (3.7) BS01 rna ? GO:0000027 ... P60422 22187675
    173901 4v89:BC (3.7) BS02 rna ? GO:0000027 ... P60422 22187675
    173902 4v89:BD (3.7) BS01 rna ? GO:0000027 ... P60438 22187675
    173903 4v89:BE (3.7) BS01 rna ? GO:0001070 ... P60723 22187675
    173904 4v89:BF (3.7) BS01 rna ? GO:0000027 ... P62399 22187675
    173905 4v89:BF (3.7) BS02 rna ? GO:0000027 ... P62399 22187675
    173906 4v89:BG (3.7) BS01 rna ? GO:0000027 ... P0AG55 22187675
    173907 4v89:BH (3.7) BS01 rna ? GO:0002181 ... P0A7J3 22187675
    173908 4v89:BI (3.7) BS01 rna ? GO:0000027 ... P0A7J7 22187675
    173909 4v89:BN (3.7) BS01 rna ? GO:0002181 ... P0AA10 22187675
    173910 4v89:BO (3.7) BS01 rna ? GO:0002181 ... P0ADY3 22187675
    173911 4v89:BO (3.7) BS02 rna ? GO:0002181 ... P0ADY3 22187675
    173912 4v89:BP (3.7) BS01 rna ? GO:0002181 ... P02413 22187675
    173913 4v89:BQ (3.7) BS01 rna ? GO:0000027 ... P0ADY7 22187675
    173914 4v89:BQ (3.7) BS02 rna ? GO:0000027 ... P0ADY7 22187675
    173915 4v89:BR (3.7) BS01 rna ? GO:0000027 ... P0AG44 22187675
    173916 4v89:BS (3.7) BS01 rna ? GO:0002181 ... P0C018 22187675
    173917 4v89:BS (3.7) BS02 rna ? GO:0002181 ... P0C018 22187675
    173918 4v89:BT (3.7) BS01 rna ? GO:0000027 ... P0A7K6 22187675
    173919 4v89:BT (3.7) BS02 rna ? GO:0000027 ... P0A7K6 22187675
    173920 4v89:BU (3.7) BS01 rna ? GO:0000027 ... P0A7L3 22187675
    173921 4v89:BV (3.7) BS01 rna ? GO:0002181 ... P0AG48 22187675
    173922 4v89:BW (3.7) BS01 rna ? GO:0002181 ... P61175 22187675
    173923 4v89:BX (3.7) BS01 rna ? GO:0000027 ... P0ADZ0 22187675
    173924 4v89:BY (3.7) BS01 rna ? GO:0000027 ... P60624 22187675
    173925 4v89:BZ (3.7) BS01 rna ? GO:0000027 ... P68919 22187675
    173926 4v89:BZ (3.7) BS02 rna ? GO:0000027 ... P68919 22187675
    173927 4v8a:A0 (3.2) BS01 rna ? GO:0003735 ... P60493 22240456
    173928 4v8a:A0 (3.2) BS02 rna ? GO:0003735 ... P60493 22240456
    173929 4v8a:A1 (3.2) BS01 rna ? GO:0003735 ... P60494 22240456
    173930 4v8a:A2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 22240456
    173931 4v8a:A3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 22240456
    173932 4v8a:A3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 22240456
    173933 4v8a:A4 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 22240456
    173934 4v8a:A5 (3.2) BS01 rna ? GO:0003735 ... P80339 22240456
    173935 4v8a:A6 (3.2) BS01 rna ? GO:0000049 ... P35871 22240456
    173936 4v8a:A7 (3.2) BS01 rna ? GO:0003735 ... P80340 22240456
    173937 4v8a:A8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 22240456
    173938 4v8a:AD (3.2) BS01 rna ? GO:0002181 ... P60405 22240456
    173939 4v8a:AD (3.2) BS02 rna ? GO:0002181 ... P60405 22240456
    173940 4v8a:AE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 22240456
    173941 4v8a:AF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 22240456
    173942 4v8a:AG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 22240456
    173943 4v8a:AG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 22240456
    173944 4v8a:AH (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    173945 4v8a:AI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 22240456
    173946 4v8a:AN (3.2) BS01 rna ? GO:0003729 ... P60488 22240456
    173947 4v8a:AO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 22240456
    173948 4v8a:AO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 22240456
    173949 4v8a:AP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 22240456
    173950 4v8a:AQ (3.2) BS01 rna ? GO:0000049 ... P60489 22240456
    173951 4v8a:AQ (3.2) BS02 rna ? GO:0000049 ... P60489 22240456
    173952 4v8a:AR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 22240456
    173953 4v8a:AS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 22240456
    173954 4v8a:AS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 22240456
    173955 4v8a:AT (3.2) BS01 rna ? GO:0003735 ... P60490 22240456
    173956 4v8a:AT (3.2) BS02 rna ? GO:0003735 ... P60490 22240456
    173957 4v8a:AU (3.2) BS01 rna ? GO:0000027 ... P60491 22240456
    173958 4v8a:AV (3.2) BS01 rna ? GO:0003723 ... P60492 22240456
    173959 4v8a:AW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 22240456
    173960 4v8a:AX (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 22240456
    173961 4v8a:AY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 22240456
    173962 4v8a:AZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 22240456
    173963 4v8a:AZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 22240456
    173964 4v8a:B0 (3.2) BS01 rna ? GO:0003735 ... P60493 22240456
    173965 4v8a:B0 (3.2) BS02 rna ? GO:0003735 ... P60493 22240456
    173966 4v8a:B1 (3.2) BS01 rna ? GO:0003735 ... P60494 22240456
    173967 4v8a:B2 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 22240456
    173968 4v8a:B3 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 22240456
    173969 4v8a:B3 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 22240456
    173970 4v8a:B4 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 22240456
    173971 4v8a:B5 (3.2) BS01 rna ? GO:0003735 ... P80339 22240456
    173972 4v8a:B6 (3.2) BS01 rna ? GO:0000049 ... P35871 22240456
    173973 4v8a:B7 (3.2) BS01 rna ? GO:0003735 ... P80340 22240456
    173974 4v8a:B8 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 22240456
    173975 4v8a:BD (3.2) BS01 rna ? GO:0002181 ... P60405 22240456
    173976 4v8a:BD (3.2) BS02 rna ? GO:0002181 ... P60405 22240456
    173977 4v8a:BE (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 22240456
    173978 4v8a:BF (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 22240456
    173979 4v8a:BG (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 22240456
    173980 4v8a:BG (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 22240456
    173981 4v8a:BH (3.2) BS01 rna N/A GO:0003735 ... N/A 22240456
    173982 4v8a:BI (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 22240456
    173983 4v8a:BN (3.2) BS01 rna ? GO:0003729 ... P60488 22240456
    173984 4v8a:BO (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 22240456
    173985 4v8a:BO (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 22240456
    173986 4v8a:BP (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 22240456
    173987 4v8a:BQ (3.2) BS01 rna ? GO:0000049 ... P60489 22240456
    173988 4v8a:BQ (3.2) BS02 rna ? GO:0000049 ... P60489 22240456
    173989 4v8a:BR (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 22240456
    173990 4v8a:BS (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 22240456
    173991 4v8a:BS (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 22240456
    173992 4v8a:BT (3.2) BS01 rna ? GO:0003735 ... P60490 22240456
    173993 4v8a:BT (3.2) BS02 rna ? GO:0003735 ... P60490 22240456
    173994 4v8a:BU (3.2) BS01 rna ? GO:0000027 ... P60491 22240456
    173995 4v8a:BV (3.2) BS01 rna ? GO:0003723 ... P60492 22240456
    173996 4v8a:BW (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 22240456
    173997 4v8a:BX (3.2) BS01 rna ? GO:0000027 ... Q5SHP0 22240456
    173998 4v8a:BY (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 22240456
    173999 4v8a:BZ (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 22240456
    174000 4v8a:BZ (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 22240456
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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