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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    173601 4v88:BR (3.0) BS04 OHX ? GO:0002181 ... P0CX82 22096102
    173602 4v88:BR (3.0) BS05 MG ? GO:0002181 ... P0CX82 22096102
    173603 4v88:BR (3.0) BS06 MG ? GO:0002181 ... P0CX82 22096102
    173604 4v88:BS (3.0) BS01 rna ? GO:0002181 ... P0CX23 22096102
    173605 4v88:BS (3.0) BS02 rna ? GO:0002181 ... P0CX23 22096102
    173606 4v88:BS (3.0) BS03 MG ? GO:0002181 ... P0CX23 22096102
    173607 4v88:BT (3.0) BS01 rna ? GO:0002181 ... Q02753 22096102
    173608 4v88:BT (3.0) BS02 rna ? GO:0002181 ... Q02753 22096102
    173609 4v88:BT (3.0) BS03 OHX ? GO:0002181 ... Q02753 22096102
    173610 4v88:BT (3.0) BS04 MG ? GO:0002181 ... Q02753 22096102
    173611 4v88:BU (3.0) BS01 rna ? GO:0002181 ... P05749 22096102
    173612 4v88:BV (3.0) BS01 rna ? GO:0002181 ... P0CX41 22096102
    173613 4v88:BV (3.0) BS02 rna ? GO:0002181 ... P0CX41 22096102
    173614 4v88:BV (3.0) BS03 MG ? GO:0002181 ... P0CX41 22096102
    173615 4v88:BW (3.0) BS01 rna ? GO:0002181 ... P04449 22096102
    173616 4v88:BW (3.0) BS02 rna ? GO:0002181 ... P04449 22096102
    173617 4v88:BX (3.0) BS01 rna ? GO:0000027 ... P04456 22096102
    173618 4v88:BX (3.0) BS02 rna ? GO:0000027 ... P04456 22096102
    173619 4v88:BY (3.0) BS01 rna ? GO:0002181 ... P05743 22096102
    173620 4v88:BY (3.0) BS02 rna ? GO:0002181 ... P05743 22096102
    173621 4v88:BY (3.0) BS03 MG ? GO:0002181 ... P05743 22096102
    173622 4v88:BZ (3.0) BS01 rna ? GO:0002181 ... P0C2H6 22096102
    173623 4v88:Ba (3.0) BS01 rna ? GO:0002181 ... P02406 22096102
    173624 4v88:Ba (3.0) BS02 MG ? GO:0002181 ... P02406 22096102
    173625 4v88:Ba (3.0) BS03 MG ? GO:0002181 ... P02406 22096102
    173626 4v88:Ba (3.0) BS04 MG ? GO:0002181 ... P02406 22096102
    173627 4v88:Ba (3.0) BS05 MG ? GO:0002181 ... P02406 22096102
    173628 4v88:Ba (3.0) BS06 MG ? GO:0002181 ... P02406 22096102
    173629 4v88:Bb (3.0) BS01 rna ? GO:0002181 ... P05747 22096102
    173630 4v88:Bb (3.0) BS02 OHX ? GO:0002181 ... P05747 22096102
    173631 4v88:Bc (3.0) BS01 rna ? GO:0002181 ... P14120 22096102
    173632 4v88:Bd (3.0) BS01 rna ? GO:0002181 ... P0C2H8 22096102
    173633 4v88:Bd (3.0) BS02 MG ? GO:0002181 ... P0C2H8 22096102
    173634 4v88:Bd (3.0) BS03 MG ? GO:0002181 ... P0C2H8 22096102
    173635 4v88:Be (3.0) BS01 rna ? GO:0002181 ... P38061 22096102
    173636 4v88:Be (3.0) BS02 MG ? GO:0002181 ... P38061 22096102
    173637 4v88:Be (3.0) BS03 MG ? GO:0002181 ... P38061 22096102
    173638 4v88:Be (3.0) BS04 MG ? GO:0002181 ... P38061 22096102
    173639 4v88:Bf (3.0) BS01 rna ? GO:0000027 ... P05744 22096102
    173640 4v88:Bf (3.0) BS02 MG ? GO:0000027 ... P05744 22096102
    173641 4v88:Bf (3.0) BS03 OHX ? GO:0000027 ... P05744 22096102
    173642 4v88:Bf (3.0) BS04 MG ? GO:0000027 ... P05744 22096102
    173643 4v88:Bg (3.0) BS01 rna ? GO:0002181 ... P87262 22096102
    173644 4v88:Bg (3.0) BS02 MG ? GO:0002181 ... P87262 22096102
    173645 4v88:Bh (3.0) BS01 rna ? GO:0000463 ... P0CX84 22096102
    173646 4v88:Bh (3.0) BS02 rna ? GO:0000463 ... P0CX84 22096102
    173647 4v88:Bi (3.0) BS01 rna ? GO:0002181 ... P05745 22096102
    173648 4v88:Bj (3.0) BS01 rna ? GO:0000448 ... P49166 22096102
    173649 4v88:Bj (3.0) BS02 rna ? GO:0000448 ... P49166 22096102
    173650 4v88:Bj (3.0) BS03 OHX ? GO:0000448 ... P49166 22096102
    173651 4v88:Bj (3.0) BS04 OHX ? GO:0000448 ... P49166 22096102
    173652 4v88:Bj (3.0) BS05 OHX ? GO:0000448 ... P49166 22096102
    173653 4v88:Bj (3.0) BS06 MG ? GO:0000448 ... P49166 22096102
    173654 4v88:Bj (3.0) BS07 MG ? GO:0000448 ... P49166 22096102
    173655 4v88:Bj (3.0) BS08 MG ? GO:0000448 ... P49166 22096102
    173656 4v88:Bj (3.0) BS09 MG ? GO:0000448 ... P49166 22096102
    173657 4v88:Bj (3.0) BS10 ZN ? GO:0000448 ... P49166 22096102
    173658 4v88:Bk (3.0) BS01 rna ? GO:0002181 ... P49167 22096102
    173659 4v88:Bl (3.0) BS01 rna ? GO:0002181 ... P04650 22096102
    173660 4v88:Bl (3.0) BS02 rna ? GO:0002181 ... P04650 22096102
    173661 4v88:Bl (3.0) BS03 OHX ? GO:0002181 ... P04650 22096102
    173662 4v88:Bl (3.0) BS04 MG ? GO:0002181 ... P04650 22096102
    173663 4v88:Bm (3.0) BS01 rna ? GO:0000027 ... P0CH08 22096102
    173664 4v88:Bm (3.0) BS02 MG ? GO:0000027 ... P0CH08 22096102
    173665 4v88:Bm (3.0) BS03 ZN ? GO:0000027 ... P0CH08 22096102
    173666 4v88:Bo (3.0) BS01 rna ? GO:0002181 ... P0CX27 22096102
    173667 4v88:Bo (3.0) BS02 OHX ? GO:0002181 ... P0CX27 22096102
    173668 4v88:Bo (3.0) BS03 ZN ? GO:0002181 ... P0CX27 22096102
    173669 4v88:Bp (3.0) BS01 rna ? GO:0002181 ... P0CX25 22096102
    173670 4v88:Bp (3.0) BS02 ZN ? GO:0002181 ... P0CX25 22096102
    173671 4v88:CA (3.0) BS01 rna ? GO:0000028 ... P32905 22096102
    173672 4v88:CB (3.0) BS01 rna ? GO:0000462 ... P33442 22096102
    173673 4v88:CB (3.0) BS02 OHX ? GO:0000462 ... P33442 22096102
    173674 4v88:CC (3.0) BS01 rna ? GO:0000054 ... P25443 22096102
    173675 4v88:CD (3.0) BS01 rna ? GO:0000054 ... P05750 22096102
    173676 4v88:CE (3.0) BS01 rna ? GO:0002181 ... P0CX35 22096102
    173677 4v88:CF (3.0) BS01 rna ? GO:0000028 ... P26783 22096102
    173678 4v88:CF (3.0) BS02 MG ? GO:0000028 ... P26783 22096102
    173679 4v88:CG (3.0) BS01 rna ? GO:0000462 ... P0CX37 22096102
    173680 4v88:CH (3.0) BS01 rna ? GO:0002181 ... P26786 22096102
    173681 4v88:CI (3.0) BS01 rna ? GO:0000462 ... P0CX39 22096102
    173682 4v88:CI (3.0) BS02 rna ? GO:0000462 ... P0CX39 22096102
    173683 4v88:CI (3.0) BS03 OHX ? GO:0000462 ... P0CX39 22096102
    173684 4v88:CJ (3.0) BS01 rna ? GO:0000462 ... O13516 22096102
    173685 4v88:CJ (3.0) BS02 OHX ? GO:0000462 ... O13516 22096102
    173686 4v88:CK (3.0) BS01 rna ? GO:0000054 ... Q08745 22096102
    173687 4v88:CL (3.0) BS01 rna ? GO:0000028 ... P0CX47 22096102
    173688 4v88:CM (3.0) BS01 rna ? GO:0000028 ... P48589 22096102
    173689 4v88:CN (3.0) BS01 rna ? GO:0000462 ... P05756 22096102
    173690 4v88:CN (3.0) BS02 rna ? GO:0000462 ... P05756 22096102
    173691 4v88:CN (3.0) BS03 OHX ? GO:0000462 ... P05756 22096102
    173692 4v88:CO (3.0) BS01 rna ? GO:0000028 ... P06367 22096102
    173693 4v88:CP (3.0) BS01 rna ? GO:0000028 ... Q01855 22096102
    173694 4v88:CP (3.0) BS02 OHX ? GO:0000028 ... Q01855 22096102
    173695 4v88:CP (3.0) BS03 OHX ? GO:0000028 ... Q01855 22096102
    173696 4v88:CQ (3.0) BS01 rna ? GO:0000462 ... P0CX51 22096102
    173697 4v88:CR (3.0) BS01 rna ? GO:0000028 ... P02407 22096102
    173698 4v88:CS (3.0) BS01 rna ? GO:0000054 ... P0CX55 22096102
    173699 4v88:CS (3.0) BS02 MG ? GO:0000054 ... P0CX55 22096102
    173700 4v88:CT (3.0) BS01 rna ? GO:0000028 ... P07280 22096102
    173701 4v88:CT (3.0) BS02 MG ? GO:0000028 ... P07280 22096102
    173702 4v88:CU (3.0) BS01 rna ? GO:0000462 ... P38701 22096102
    173703 4v88:CW (3.0) BS01 rna ? GO:0002181 ... P0C0W1 22096102
    173704 4v88:CX (3.0) BS01 rna ? GO:0000462 ... P0CX29 22096102
    173705 4v88:CY (3.0) BS01 rna ? GO:0000462 ... P0CX31 22096102
    173706 4v88:CZ (3.0) BS01 rna ? GO:0002181 ... Q3E792 22096102
    173707 4v88:Ca (3.0) BS01 rna ? GO:0000054 ... P39938 22096102
    173708 4v88:Ca (3.0) BS02 ZN ? GO:0000054 ... P39938 22096102
    173709 4v88:Cb (3.0) BS01 rna ? GO:0000028 ... P35997 22096102
    173710 4v88:Cc (3.0) BS01 rna ? GO:0000028 ... Q3E7X9 22096102
    173711 4v88:Cd (3.0) BS01 rna ? GO:0002181 ... P41057 22096102
    173712 4v88:Cd (3.0) BS02 MG ? GO:0002181 ... P41057 22096102
    173713 4v88:Cd (3.0) BS03 ZN ? GO:0002181 ... P41057 22096102
    173714 4v88:Ce (3.0) BS01 rna ? GO:0002181 ... P0CX33 22096102
    173715 4v88:Cf (3.0) BS01 rna ? GO:0000028 ... P05759 22096102
    173716 4v88:Cg (3.0) BS01 rna ? GO:0001965 ... P38011 22096102
    173717 4v88:Cg (3.0) BS02 OHX ? GO:0001965 ... P38011 22096102
    173718 4v88:DA (3.0) BS01 rna ? GO:0002181 ... P0CX45 22096102
    173719 4v88:DA (3.0) BS02 rna ? GO:0002181 ... P0CX45 22096102
    173720 4v88:DA (3.0) BS03 OHX ? GO:0002181 ... P0CX45 22096102
    173721 4v88:DA (3.0) BS04 MG ? GO:0002181 ... P0CX45 22096102
    173722 4v88:DA (3.0) BS05 MG ? GO:0002181 ... P0CX45 22096102
    173723 4v88:DB (3.0) BS01 rna ? GO:0000027 ... P14126 22096102
    173724 4v88:DB (3.0) BS02 MG ? GO:0000027 ... P14126 22096102
    173725 4v88:DB (3.0) BS03 MG ? GO:0000027 ... P14126 22096102
    173726 4v88:DB (3.0) BS04 OHX ? GO:0000027 ... P14126 22096102
    173727 4v88:DB (3.0) BS05 MG ? GO:0000027 ... P14126 22096102
    173728 4v88:DB (3.0) BS06 MG ? GO:0000027 ... P14126 22096102
    173729 4v88:DB (3.0) BS07 MG ? GO:0000027 ... P14126 22096102
    173730 4v88:DB (3.0) BS08 MG ? GO:0000027 ... P14126 22096102
    173731 4v88:DB (3.0) BS09 MG ? GO:0000027 ... P14126 22096102
    173732 4v88:DB (3.0) BS10 MG ? GO:0000027 ... P14126 22096102
    173733 4v88:DB (3.0) BS11 MG ? GO:0000027 ... P14126 22096102
    173734 4v88:DC (3.0) BS01 rna ? GO:0002181 ... P10664 22096102
    173735 4v88:DC (3.0) BS02 rna ? GO:0002181 ... P10664 22096102
    173736 4v88:DC (3.0) BS03 OHX ? GO:0002181 ... P10664 22096102
    173737 4v88:DC (3.0) BS04 MG ? GO:0002181 ... P10664 22096102
    173738 4v88:DD (3.0) BS01 rna ? GO:0000027 ... P26321 22096102
    173739 4v88:DD (3.0) BS02 rna ? GO:0000027 ... P26321 22096102
    173740 4v88:DD (3.0) BS03 MG ? GO:0000027 ... P26321 22096102
    173741 4v88:DD (3.0) BS04 MG ? GO:0000027 ... P26321 22096102
    173742 4v88:DD (3.0) BS05 MG ? GO:0000027 ... P26321 22096102
    173743 4v88:DD (3.0) BS06 MG ? GO:0000027 ... P26321 22096102
    173744 4v88:DD (3.0) BS07 MG ? GO:0000027 ... P26321 22096102
    173745 4v88:DD (3.0) BS08 MG ? GO:0000027 ... P26321 22096102
    173746 4v88:DE (3.0) BS01 rna ? GO:0000027 ... Q02326 22096102
    173747 4v88:DF (3.0) BS01 rna ? GO:0000463 ... P05737 22096102
    173748 4v88:DF (3.0) BS02 rna ? GO:0000463 ... P05737 22096102
    173749 4v88:DF (3.0) BS03 MG ? GO:0000463 ... P05737 22096102
    173750 4v88:DF (3.0) BS04 MG ? GO:0000463 ... P05737 22096102
    173751 4v88:DG (3.0) BS01 rna ? GO:0000470 ... P17076 22096102
    173752 4v88:DG (3.0) BS02 rna ? GO:0000470 ... P17076 22096102
    173753 4v88:DG (3.0) BS03 OHX ? GO:0000470 ... P17076 22096102
    173754 4v88:DH (3.0) BS01 rna ? GO:0002181 ... P05738 22096102
    173755 4v88:DH (3.0) BS02 MG ? GO:0002181 ... P05738 22096102
    173756 4v88:DI (3.0) BS01 rna ? GO:0000027 ... P41805 22096102
    173757 4v88:DI (3.0) BS02 rna ? GO:0000027 ... P41805 22096102
    173758 4v88:DI (3.0) BS03 OHX ? GO:0000027 ... P41805 22096102
    173759 4v88:DI (3.0) BS04 OHX ? GO:0000027 ... P41805 22096102
    173760 4v88:DJ (3.0) BS01 rna ? GO:0000027 ... P0C0W9 22096102
    173761 4v88:DJ (3.0) BS02 rna ? GO:0000027 ... P0C0W9 22096102
    173762 4v88:DJ (3.0) BS03 OHX ? GO:0000027 ... P0C0W9 22096102
    173763 4v88:DL (3.0) BS01 rna ? GO:0002181 ... Q12690 22096102
    173764 4v88:DL (3.0) BS02 rna ? GO:0002181 ... Q12690 22096102
    173765 4v88:DL (3.0) BS03 MG ? GO:0002181 ... Q12690 22096102
    173766 4v88:DM (3.0) BS01 rna ? GO:0000027 ... P36105 22096102
    173767 4v88:DM (3.0) BS02 MG ? GO:0000027 ... P36105 22096102
    173768 4v88:DN (3.0) BS01 rna ? GO:0002181 ... P05748 22096102
    173769 4v88:DN (3.0) BS02 rna ? GO:0002181 ... P05748 22096102
    173770 4v88:DN (3.0) BS03 MG ? GO:0002181 ... P05748 22096102
    173771 4v88:DO (3.0) BS01 rna ? GO:0000470 ... P26784 22096102
    173772 4v88:DO (3.0) BS02 MG ? GO:0000470 ... P26784 22096102
    173773 4v88:DO (3.0) BS03 MG ? GO:0000470 ... P26784 22096102
    173774 4v88:DO (3.0) BS04 MG ? GO:0000470 ... P26784 22096102
    173775 4v88:DO (3.0) BS05 MG ? GO:0000470 ... P26784 22096102
    173776 4v88:DO (3.0) BS06 MG ? GO:0000470 ... P26784 22096102
    173777 4v88:DP (3.0) BS01 rna ? GO:0000448 ... P05740 22096102
    173778 4v88:DP (3.0) BS02 rna ? GO:0000448 ... P05740 22096102
    173779 4v88:DP (3.0) BS03 MG ? GO:0000448 ... P05740 22096102
    173780 4v88:DP (3.0) BS04 MG ? GO:0000448 ... P05740 22096102
    173781 4v88:DP (3.0) BS05 MG ? GO:0000448 ... P05740 22096102
    173782 4v88:DP (3.0) BS06 OHX ? GO:0000448 ... P05740 22096102
    173783 4v88:DP (3.0) BS07 MG ? GO:0000448 ... P05740 22096102
    173784 4v88:DP (3.0) BS08 MG ? GO:0000448 ... P05740 22096102
    173785 4v88:DQ (3.0) BS01 rna ? GO:0002181 ... P0CX49 22096102
    173786 4v88:DQ (3.0) BS02 MG ? GO:0002181 ... P0CX49 22096102
    173787 4v88:DQ (3.0) BS03 MG ? GO:0002181 ... P0CX49 22096102
    173788 4v88:DR (3.0) BS01 rna ? GO:0002181 ... P0CX82 22096102
    173789 4v88:DR (3.0) BS02 rna ? GO:0002181 ... P0CX82 22096102
    173790 4v88:DR (3.0) BS03 MG ? GO:0002181 ... P0CX82 22096102
    173791 4v88:DR (3.0) BS04 MG ? GO:0002181 ... P0CX82 22096102
    173792 4v88:DS (3.0) BS01 rna ? GO:0002181 ... P0CX23 22096102
    173793 4v88:DS (3.0) BS02 rna ? GO:0002181 ... P0CX23 22096102
    173794 4v88:DS (3.0) BS03 MG ? GO:0002181 ... P0CX23 22096102
    173795 4v88:DS (3.0) BS04 MG ? GO:0002181 ... P0CX23 22096102
    173796 4v88:DS (3.0) BS05 MG ? GO:0002181 ... P0CX23 22096102
    173797 4v88:DT (3.0) BS01 rna ? GO:0002181 ... Q02753 22096102
    173798 4v88:DT (3.0) BS02 rna ? GO:0002181 ... Q02753 22096102
    173799 4v88:DT (3.0) BS03 OHX ? GO:0002181 ... Q02753 22096102
    173800 4v88:DT (3.0) BS04 MG ? GO:0002181 ... Q02753 22096102
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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