Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    173201 4v84:BQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 21245352
    173202 4v84:BR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 21245352
    173203 4v84:BS (3.4) BS01 rna ? GO:0003735 ... Q72I09 21245352
    173204 4v84:BT (3.4) BS01 rna ? GO:0000027 ... Q72I06 21245352
    173205 4v84:BU (3.4) BS01 rna ? GO:0003723 ... Q72I15 21245352
    173206 4v84:BV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 21245352
    173207 4v84:BV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 21245352
    173208 4v84:BW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 21245352
    173209 4v84:BW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 21245352
    173210 4v84:BX (3.4) BS01 rna ? GO:0005840 ... Q72G84 21245352
    173211 4v84:BY (3.4) BS01 rna ? GO:0003735 ... Q72I12 21245352
    173212 4v84:BZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 21245352
    173213 4v84:BZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 21245352
    173214 4v84:CB (3.4) BS01 rna ? GO:0003735 ... P62662 21245352
    173215 4v84:CD (3.4) BS01 rna ? GO:0003723 ... P62664 21245352
    173216 4v84:CE (3.4) BS01 rna ? GO:0003723 ... P62665 21245352
    173217 4v84:CF (3.4) BS01 rna ? GO:0003735 ... P62666 21245352
    173218 4v84:CG (3.4) BS01 rna ? GO:0000028 ... P62667 21245352
    173219 4v84:CH (3.4) BS01 rna ? GO:0003735 ... P62668 21245352
    173220 4v84:CI (3.4) BS01 rna ? GO:0000049 ... P62669 21245352
    173221 4v84:CI (3.4) BS02 rna ? GO:0000049 ... P62669 21245352
    173222 4v84:CJ (3.4) BS01 rna ? GO:0000049 ... P62653 21245352
    173223 4v84:CK (3.4) BS01 rna ? GO:0003735 ... P62654 21245352
    173224 4v84:CL (3.4) BS01 rna ? GO:0000049 ... P61941 21245352
    173225 4v84:CM (3.4) BS01 rna ? GO:0000049 ... P62655 21245352
    173226 4v84:CN (3.4) BS01 rna ? GO:0003735 ... P62656 21245352
    173227 4v84:CN (3.4) BS02 ZN ? GO:0003735 ... P62656 21245352
    173228 4v84:CO (3.4) BS01 rna ? GO:0003735 ... P62657 21245352
    173229 4v84:CO (3.4) BS02 rna ? GO:0003735 ... P62657 21245352
    173230 4v84:CP (3.4) BS01 rna ? GO:0003735 ... P62238 21245352
    173231 4v84:CQ (3.4) BS01 rna ? GO:0003735 ... P62658 21245352
    173232 4v84:CR (3.4) BS01 rna ? GO:0003735 ... P62659 21245352
    173233 4v84:CS (3.4) BS01 rna ? GO:0003723 ... P62660 21245352
    173234 4v84:CT (3.4) BS01 rna ? GO:0003723 ... P62661 21245352
    173235 4v84:D2 (3.4) BS01 rna ? GO:0003735 ... P62652 21245352
    173236 4v84:D3 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 21245352
    173237 4v84:D4 (3.4) BS01 rna ? GO:0003735 ... P80340 21245352
    173238 4v84:D5 (3.4) BS01 rna ? GO:0003735 ... Q72L77 21245352
    173239 4v84:DC (3.4) BS01 rna ? GO:0002181 ... Q72I07 21245352
    173240 4v84:DD (3.4) BS01 rna ? GO:0003735 ... Q72I04 21245352
    173241 4v84:DE (3.4) BS01 rna ? GO:0003735 ... Q72I05 21245352
    173242 4v84:DE (3.4) BS02 MG ? GO:0003735 ... Q72I05 21245352
    173243 4v84:DF (3.4) BS01 rna ? GO:0000049 ... Q72I16 21245352
    173244 4v84:DF (3.4) BS02 rna ? GO:0000049 ... Q72I16 21245352
    173245 4v84:DG (3.4) BS01 rna ? GO:0003735 ... Q72I19 21245352
    173246 4v84:DH (3.4) BS01 rna ? GO:0003735 ... Q72GV5 21245352
    173247 4v84:DJ (3.4) BS01 rna ? GO:0003729 ... Q72IN1 21245352
    173248 4v84:DK (3.4) BS01 rna ? GO:0003735 ... Q72I14 21245352
    173249 4v84:DK (3.4) BS02 rna ? GO:0003735 ... Q72I14 21245352
    173250 4v84:DK (3.4) BS03 MG ? GO:0003735 ... Q72I14 21245352
    173251 4v84:DL (3.4) BS01 rna ? GO:0003735 ... Q72I23 21245352
    173252 4v84:DM (3.4) BS01 rna ? GO:0000049 ... Q72I11 21245352
    173253 4v84:DM (3.4) BS02 rna ? GO:0000049 ... Q72I11 21245352
    173254 4v84:DN (3.4) BS01 rna ? GO:0003735 ... Q72I33 21245352
    173255 4v84:DO (3.4) BS01 rna ? GO:0003735 ... Q72I20 21245352
    173256 4v84:DO (3.4) BS02 rna ? GO:0003735 ... Q72I20 21245352
    173257 4v84:DP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 21245352
    173258 4v84:DP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 21245352
    173259 4v84:DQ (3.4) BS01 rna ? GO:0000027 ... Q72L76 21245352
    173260 4v84:DR (3.4) BS01 rna ? GO:0003723 ... Q72HR2 21245352
    173261 4v84:DS (3.4) BS01 rna ? GO:0003735 ... Q72I09 21245352
    173262 4v84:DT (3.4) BS01 rna ? GO:0000027 ... Q72I06 21245352
    173263 4v84:DU (3.4) BS01 rna ? GO:0003723 ... Q72I15 21245352
    173264 4v84:DV (3.4) BS01 rna ? GO:0003723 ... Q72IA7 21245352
    173265 4v84:DV (3.4) BS02 rna ? GO:0003723 ... Q72IA7 21245352
    173266 4v84:DW (3.4) BS01 rna ? GO:0003735 ... Q72HR3 21245352
    173267 4v84:DW (3.4) BS02 rna ? GO:0003735 ... Q72HR3 21245352
    173268 4v84:DX (3.4) BS01 rna ? GO:0005840 ... Q72G84 21245352
    173269 4v84:DY (3.4) BS01 rna ? GO:0003735 ... Q72I12 21245352
    173270 4v84:DZ (3.4) BS01 rna ? GO:0003735 ... Q72I22 21245352
    173271 4v84:DZ (3.4) BS02 rna ? GO:0003735 ... Q72I22 21245352
    173272 4v85:AB (3.2) BS01 rna ? GO:0000028 ... P0A7V0 22187675
    173273 4v85:AC (3.2) BS01 rna ? GO:0000028 ... P0A7V3 22187675
    173274 4v85:AC (3.2) BS02 MG ? GO:0000028 ... P0A7V3 22187675
    173275 4v85:AD (3.2) BS01 rna ? GO:0000028 ... P0A7V8 22187675
    173276 4v85:AE (3.2) BS01 rna ? GO:0000028 ... P0A7W1 22187675
    173277 4v85:AF (3.2) BS01 rna ? GO:0002181 ... P02358 22187675
    173278 4v85:AG (3.2) BS01 rna ? GO:0003723 ... P02359 22187675
    173279 4v85:AH (3.2) BS01 rna ? GO:0000028 ... P0A7W7 22187675
    173280 4v85:AI (3.2) BS01 rna ? GO:0000049 ... P0A7X3 22187675
    173281 4v85:AJ (3.2) BS01 rna ? GO:0000049 ... P0A7R5 22187675
    173282 4v85:AK (3.2) BS01 rna ? GO:0002181 ... P0A7R9 22187675
    173283 4v85:AL (3.2) BS01 rna ? GO:0000049 ... P0A7S3 22187675
    173284 4v85:AL (3.2) BS02 MG ? GO:0000049 ... P0A7S3 22187675
    173285 4v85:AL (3.2) BS03 MG ? GO:0000049 ... P0A7S3 22187675
    173286 4v85:AM (3.2) BS01 rna ? GO:0000049 ... P0A7S9 22187675
    173287 4v85:AN (3.2) BS01 rna ? GO:0000028 ... P0AG59 22187675
    173288 4v85:AO (3.2) BS01 rna ? GO:0000028 ... P0ADZ4 22187675
    173289 4v85:AO (3.2) BS02 rna ? GO:0000028 ... P0ADZ4 22187675
    173290 4v85:AP (3.2) BS01 rna ? GO:0000028 ... P0A7T3 22187675
    173291 4v85:AQ (3.2) BS01 rna ? GO:0000028 ... P0AG63 22187675
    173292 4v85:AR (3.2) BS01 rna ? GO:0002181 ... P0A7T7 22187675
    173293 4v85:AS (3.2) BS01 rna ? GO:0000028 ... P0A7U3 22187675
    173294 4v85:AT (3.2) BS01 rna ? GO:0000028 ... P0A7U7 22187675
    173295 4v85:AU (3.2) BS01 rna ? GO:0000028 ... P68679 22187675
    173296 4v85:AW (3.2) BS01 rna ? GO:0003924 ... P0A7I4 22187675
    173297 4v85:AW (3.2) BS02 rna ? GO:0003924 ... P0A7I4 22187675
    173298 4v85:AW (3.2) BS03 MG ? GO:0003924 ... P0A7I4 22187675
    173299 4v85:AW (3.2) BS04 GNP ? GO:0003924 ... P0A7I4 22187675
    173300 4v85:B0 (3.2) BS01 rna ? GO:0000027 ... P0A7L8 22187675
    173301 4v85:B0 (3.2) BS02 MG ? GO:0000027 ... P0A7L8 22187675
    173302 4v85:B1 (3.2) BS01 rna ? GO:0000027 ... P0A7M2 22187675
    173303 4v85:B2 (3.2) BS01 rna ? GO:0000027 ... P0A7M6 22187675
    173304 4v85:B3 (3.2) BS01 rna ? GO:0000027 ... P0AG51 22187675
    173305 4v85:B3 (3.2) BS02 rna ? GO:0000027 ... P0AG51 22187675
    173306 4v85:B4 (3.2) BS01 rna ? GO:0000027 ... P0A7N4 22187675
    173307 4v85:B5 (3.2) BS01 rna ? GO:0000027 ... P0A7N9 22187675
    173308 4v85:B6 (3.2) BS01 rna ? GO:0002181 ... P0A7P5 22187675
    173309 4v85:B7 (3.2) BS01 rna ? GO:0002181 ... P0A7Q1 22187675
    173310 4v85:B8 (3.2) BS01 rna ? GO:0002181 ... P0A7Q6 22187675
    173311 4v85:BC (3.2) BS01 rna ? GO:0000027 ... P60422 22187675
    173312 4v85:BD (3.2) BS01 rna ? GO:0000027 ... P60438 22187675
    173313 4v85:BD (3.2) BS02 MG ? GO:0000027 ... P60438 22187675
    173314 4v85:BE (3.2) BS01 rna ? GO:0001070 ... P60723 22187675
    173315 4v85:BE (3.2) BS02 MG ? GO:0001070 ... P60723 22187675
    173316 4v85:BF (3.2) BS01 rna ? GO:0000027 ... P62399 22187675
    173317 4v85:BF (3.2) BS02 rna ? GO:0000027 ... P62399 22187675
    173318 4v85:BG (3.2) BS01 rna ? GO:0000027 ... P0AG55 22187675
    173319 4v85:BH (3.2) BS01 rna ? GO:0002181 ... P0A7J3 22187675
    173320 4v85:BH (3.2) BS02 MG ? GO:0002181 ... P0A7J3 22187675
    173321 4v85:BI (3.2) BS01 rna ? GO:0000027 ... P0A7J7 22187675
    173322 4v85:BN (3.2) BS01 rna ? GO:0002181 ... P0AA10 22187675
    173323 4v85:BO (3.2) BS01 rna ? GO:0002181 ... P0ADY3 22187675
    173324 4v85:BO (3.2) BS02 rna ? GO:0002181 ... P0ADY3 22187675
    173325 4v85:BP (3.2) BS01 rna ? GO:0002181 ... P02413 22187675
    173326 4v85:BQ (3.2) BS01 rna ? GO:0000027 ... P0ADY7 22187675
    173327 4v85:BQ (3.2) BS02 rna ? GO:0000027 ... P0ADY7 22187675
    173328 4v85:BQ (3.2) BS03 MG ? GO:0000027 ... P0ADY7 22187675
    173329 4v85:BR (3.2) BS01 rna ? GO:0000027 ... P0AG44 22187675
    173330 4v85:BR (3.2) BS02 MG ? GO:0000027 ... P0AG44 22187675
    173331 4v85:BS (3.2) BS01 rna ? GO:0002181 ... P0C018 22187675
    173332 4v85:BS (3.2) BS02 rna ? GO:0002181 ... P0C018 22187675
    173333 4v85:BT (3.2) BS01 rna ? GO:0000027 ... P0A7K6 22187675
    173334 4v85:BT (3.2) BS02 rna ? GO:0000027 ... P0A7K6 22187675
    173335 4v85:BU (3.2) BS01 rna ? GO:0000027 ... P0A7L3 22187675
    173336 4v85:BV (3.2) BS01 rna ? GO:0002181 ... P0AG48 22187675
    173337 4v85:BW (3.2) BS01 rna ? GO:0002181 ... P61175 22187675
    173338 4v85:BX (3.2) BS01 rna ? GO:0000027 ... P0ADZ0 22187675
    173339 4v85:BY (3.2) BS01 rna ? GO:0000027 ... P60624 22187675
    173340 4v85:BZ (3.2) BS01 rna ? GO:0000027 ... P68919 22187675
    173341 4v85:BZ (3.2) BS02 rna ? GO:0000027 ... P68919 22187675
    173342 4v87:A0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 22437501
    173343 4v87:A1 (3.1) BS01 rna ? GO:0000027 ... P60491 22437501
    173344 4v87:A2 (3.1) BS01 rna ? GO:0003723 ... P60492 22437501
    173345 4v87:A3 (3.1) BS01 rna ? GO:0003735 ... P60493 22437501
    173346 4v87:A3 (3.1) BS02 rna ? GO:0003735 ... P60493 22437501
    173347 4v87:A4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 22437501
    173348 4v87:A5 (3.1) BS01 rna ? GO:0003735 ... P80339 22437501
    173349 4v87:A6 (3.1) BS01 rna ? GO:0003735 ... P35871 22437501
    173350 4v87:A7 (3.1) BS01 rna ? GO:0003735 ... P80340 22437501
    173351 4v87:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 22437501
    173352 4v87:AD (3.1) BS01 rna ? GO:0002181 ... P60405 22437501
    173353 4v87:AE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 22437501
    173354 4v87:AE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 22437501
    173355 4v87:AF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 22437501
    173356 4v87:AF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 22437501
    173357 4v87:AF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 22437501
    173358 4v87:AG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 22437501
    173359 4v87:AG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 22437501
    173360 4v87:AG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 22437501
    173361 4v87:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    173362 4v87:AK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 22437501
    173363 4v87:AM (3.1) BS01 rna ? GO:0003729 ... P60488 22437501
    173364 4v87:AN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 22437501
    173365 4v87:AN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 22437501
    173366 4v87:AO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 22437501
    173367 4v87:AO (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 22437501
    173368 4v87:AP (3.1) BS01 rna ? GO:0000049 ... P60489 22437501
    173369 4v87:AP (3.1) BS02 rna ? GO:0000049 ... P60489 22437501
    173370 4v87:AP (3.1) BS03 rna ? GO:0000049 ... P60489 22437501
    173371 4v87:AQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 22437501
    173372 4v87:AQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 22437501
    173373 4v87:AR (3.1) BS01 rna ? GO:0003735 ... P60490 22437501
    173374 4v87:AR (3.1) BS02 rna ? GO:0003735 ... P60490 22437501
    173375 4v87:AS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 22437501
    173376 4v87:AT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 22437501
    173377 4v87:AU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 22437501
    173378 4v87:AV (3.1) BS01 rna ? GO:0003735 ... Q5SHZ1 22437501
    173379 4v87:AW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 22437501
    173380 4v87:AX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 22437501
    173381 4v87:AZ (3.1) BS01 rna ? GO:0003735 ... P60494 22437501
    173382 4v87:AZ (3.1) BS02 rna ? GO:0003735 ... P60494 22437501
    173383 4v87:BE (3.1) BS01 rna ? GO:0003735 ... P80371 22437501
    173384 4v87:BF (3.1) BS01 rna ? GO:0003676 ... P80372 22437501
    173385 4v87:BG (3.1) BS01 rna ? GO:0003723 ... P80373 22437501
    173386 4v87:BG (3.1) BS02 ZN ? GO:0003723 ... P80373 22437501
    173387 4v87:BH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 22437501
    173388 4v87:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 22437501
    173389 4v87:BJ (3.1) BS01 rna ? GO:0000028 ... P17291 22437501
    173390 4v87:BJ (3.1) BS02 rna ? GO:0000028 ... P17291 22437501
    173391 4v87:BK (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    173392 4v87:BL (3.1) BS01 rna ? GO:0000049 ... P80374 22437501
    173393 4v87:BL (3.1) BS02 rna ? GO:0000049 ... P80374 22437501
    173394 4v87:BM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 22437501
    173395 4v87:BN (3.1) BS01 rna ? GO:0003735 ... P80376 22437501
    173396 4v87:BN (3.1) BS02 MG ? GO:0003735 ... P80376 22437501
    173397 4v87:BO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 22437501
    173398 4v87:BO (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 22437501
    173399 4v87:BP (3.1) BS01 rna ? GO:0000049 ... P80377 22437501
    173400 4v87:BQ (3.1) BS01 rna N/A GO:0003735 ... N/A 22437501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417