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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    173001 4v82:BE (3.2) BS01 HEM ? GO:0005506 ... Q8DIP0 21367867
    173002 4v82:BF (3.2) BS01 HEM ? GO:0005506 ... Q8DIN9 21367867
    173003 4v82:BH (3.2) BS01 CLA ? GO:0009523 ... Q8DJ43 21367867
    173004 4v82:BH (3.2) BS02 CLA ? GO:0009523 ... Q8DJ43 21367867
    173005 4v82:BH (3.2) BS03 CLA ? GO:0009523 ... Q8DJ43 21367867
    173006 4v82:BH (3.2) BS04 CLA ? GO:0009523 ... Q8DJ43 21367867
    173007 4v82:BI (3.2) BS01 CLA ? GO:0005737 ... Q8DJZ6 21367867
    173008 4v82:BI (3.2) BS02 CLA ? GO:0005737 ... Q8DJZ6 21367867
    173009 4v82:BJ (3.2) BS01 peptide ? GO:0009523 ... P59087 21367867
    173010 4v82:BK (3.2) BS01 peptide ? GO:0009523 ... Q9F1K9 21367867
    173011 4v82:BK (3.2) BS02 CLA ? GO:0009523 ... Q9F1K9 21367867
    173012 4v82:BK (3.2) BS03 CLA ? GO:0009523 ... Q9F1K9 21367867
    173013 4v82:BK (3.2) BS04 CA ? GO:0009523 ... Q9F1K9 21367867
    173014 4v82:BO (3.2) BS01 CA ? GO:0009654 ... P0A431 21367867
    173015 4v82:BV (3.2) BS01 HEM ? GO:0005506 ... P0A386 21367867
    173016 4v82:BZ (3.2) BS01 peptide ? GO:0009523 ... Q8DHJ2 21367867
    173017 4v82:BZ (3.2) BS02 CLA ? GO:0009523 ... Q8DHJ2 21367867
    173018 4v83:AB (3.5) BS01 rna ? GO:0003735 ... P62662 21245352
    173019 4v83:AD (3.5) BS01 rna ? GO:0003723 ... P62664 21245352
    173020 4v83:AD (3.5) BS02 MG ? GO:0003723 ... P62664 21245352
    173021 4v83:AD (3.5) BS03 MG ? GO:0003723 ... P62664 21245352
    173022 4v83:AE (3.5) BS01 rna ? GO:0003723 ... P62665 21245352
    173023 4v83:AE (3.5) BS02 MG ? GO:0003723 ... P62665 21245352
    173024 4v83:AF (3.5) BS01 rna ? GO:0003735 ... P62666 21245352
    173025 4v83:AG (3.5) BS01 rna ? GO:0000028 ... P62667 21245352
    173026 4v83:AH (3.5) BS01 rna ? GO:0003735 ... P62668 21245352
    173027 4v83:AI (3.5) BS01 rna ? GO:0000049 ... P62669 21245352
    173028 4v83:AI (3.5) BS02 rna ? GO:0000049 ... P62669 21245352
    173029 4v83:AJ (3.5) BS01 rna ? GO:0000049 ... P62653 21245352
    173030 4v83:AK (3.5) BS01 rna ? GO:0003735 ... P62654 21245352
    173031 4v83:AL (3.5) BS01 rna ? GO:0000049 ... P61941 21245352
    173032 4v83:AM (3.5) BS01 rna ? GO:0000049 ... P62655 21245352
    173033 4v83:AN (3.5) BS01 rna ? GO:0003735 ... P62656 21245352
    173034 4v83:AN (3.5) BS02 ZN ? GO:0003735 ... P62656 21245352
    173035 4v83:AO (3.5) BS01 rna ? GO:0003735 ... P62657 21245352
    173036 4v83:AO (3.5) BS02 rna ? GO:0003735 ... P62657 21245352
    173037 4v83:AO (3.5) BS03 MG ? GO:0003735 ... P62657 21245352
    173038 4v83:AP (3.5) BS01 rna ? GO:0003735 ... P62238 21245352
    173039 4v83:AQ (3.5) BS01 rna ? GO:0003735 ... P62658 21245352
    173040 4v83:AQ (3.5) BS02 MG ? GO:0003735 ... P62658 21245352
    173041 4v83:AR (3.5) BS01 rna ? GO:0003735 ... P62659 21245352
    173042 4v83:AS (3.5) BS01 rna ? GO:0003723 ... P62660 21245352
    173043 4v83:AT (3.5) BS01 rna ? GO:0003723 ... P62661 21245352
    173044 4v83:B2 (3.5) BS01 rna ? GO:0003735 ... P62652 21245352
    173045 4v83:B3 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 21245352
    173046 4v83:B4 (3.5) BS01 rna ? GO:0003735 ... P80340 21245352
    173047 4v83:B5 (3.5) BS01 rna ? GO:0003735 ... Q72L77 21245352
    173048 4v83:BC (3.5) BS01 rna ? GO:0002181 ... Q72I07 21245352
    173049 4v83:BC (3.5) BS02 rna ? GO:0002181 ... Q72I07 21245352
    173050 4v83:BD (3.5) BS01 rna ? GO:0003735 ... Q72I04 21245352
    173051 4v83:BE (3.5) BS01 rna ? GO:0003735 ... Q72I05 21245352
    173052 4v83:BE (3.5) BS02 MG ? GO:0003735 ... Q72I05 21245352
    173053 4v83:BF (3.5) BS01 rna ? GO:0000049 ... Q72I16 21245352
    173054 4v83:BF (3.5) BS02 rna ? GO:0000049 ... Q72I16 21245352
    173055 4v83:BG (3.5) BS01 rna ? GO:0003735 ... Q72I19 21245352
    173056 4v83:BH (3.5) BS01 rna ? GO:0003735 ... Q72GV5 21245352
    173057 4v83:BH (3.5) BS02 MG ? GO:0003735 ... Q72GV5 21245352
    173058 4v83:BJ (3.5) BS01 rna ? GO:0003729 ... Q72IN1 21245352
    173059 4v83:BK (3.5) BS01 rna ? GO:0003735 ... Q72I14 21245352
    173060 4v83:BK (3.5) BS02 rna ? GO:0003735 ... Q72I14 21245352
    173061 4v83:BL (3.5) BS01 rna ? GO:0003735 ... Q72I23 21245352
    173062 4v83:BM (3.5) BS01 rna ? GO:0000049 ... Q72I11 21245352
    173063 4v83:BM (3.5) BS02 rna ? GO:0000049 ... Q72I11 21245352
    173064 4v83:BM (3.5) BS03 MG ? GO:0000049 ... Q72I11 21245352
    173065 4v83:BN (3.5) BS01 rna ? GO:0003735 ... Q72I33 21245352
    173066 4v83:BO (3.5) BS01 rna ? GO:0003735 ... Q72I20 21245352
    173067 4v83:BO (3.5) BS02 rna ? GO:0003735 ... Q72I20 21245352
    173068 4v83:BP (3.5) BS01 rna ? GO:0003735 ... Q72JU9 21245352
    173069 4v83:BP (3.5) BS02 rna ? GO:0003735 ... Q72JU9 21245352
    173070 4v83:BP (3.5) BS03 MG ? GO:0003735 ... Q72JU9 21245352
    173071 4v83:BQ (3.5) BS01 rna ? GO:0000027 ... Q72L76 21245352
    173072 4v83:BQ (3.5) BS02 MG ? GO:0000027 ... Q72L76 21245352
    173073 4v83:BR (3.5) BS01 rna ? GO:0003723 ... Q72HR2 21245352
    173074 4v83:BS (3.5) BS01 rna ? GO:0003735 ... Q72I09 21245352
    173075 4v83:BT (3.5) BS01 rna ? GO:0000027 ... Q72I06 21245352
    173076 4v83:BT (3.5) BS02 MG ? GO:0000027 ... Q72I06 21245352
    173077 4v83:BU (3.5) BS01 rna ? GO:0003723 ... Q72I15 21245352
    173078 4v83:BV (3.5) BS01 rna ? GO:0003723 ... Q72IA7 21245352
    173079 4v83:BV (3.5) BS02 rna ? GO:0003723 ... Q72IA7 21245352
    173080 4v83:BW (3.5) BS01 rna ? GO:0003735 ... Q72HR3 21245352
    173081 4v83:BW (3.5) BS02 rna ? GO:0003735 ... Q72HR3 21245352
    173082 4v83:BX (3.5) BS01 rna ? GO:0005840 ... Q72G84 21245352
    173083 4v83:BY (3.5) BS01 rna ? GO:0003735 ... Q72I12 21245352
    173084 4v83:BZ (3.5) BS01 rna ? GO:0003735 ... Q72I22 21245352
    173085 4v83:CB (3.5) BS01 rna ? GO:0003735 ... P62662 21245352
    173086 4v83:CB (3.5) BS02 MG ? GO:0003735 ... P62662 21245352
    173087 4v83:CD (3.5) BS01 rna ? GO:0003723 ... P62664 21245352
    173088 4v83:CD (3.5) BS02 MG ? GO:0003723 ... P62664 21245352
    173089 4v83:CE (3.5) BS01 rna ? GO:0003723 ... P62665 21245352
    173090 4v83:CE (3.5) BS02 MG ? GO:0003723 ... P62665 21245352
    173091 4v83:CE (3.5) BS03 MG ? GO:0003723 ... P62665 21245352
    173092 4v83:CF (3.5) BS01 rna ? GO:0003735 ... P62666 21245352
    173093 4v83:CF (3.5) BS02 MG ? GO:0003735 ... P62666 21245352
    173094 4v83:CG (3.5) BS01 rna ? GO:0000028 ... P62667 21245352
    173095 4v83:CG (3.5) BS02 MG ? GO:0000028 ... P62667 21245352
    173096 4v83:CH (3.5) BS01 rna ? GO:0003735 ... P62668 21245352
    173097 4v83:CI (3.5) BS01 rna ? GO:0000049 ... P62669 21245352
    173098 4v83:CI (3.5) BS02 rna ? GO:0000049 ... P62669 21245352
    173099 4v83:CJ (3.5) BS01 rna ? GO:0000049 ... P62653 21245352
    173100 4v83:CK (3.5) BS01 rna ? GO:0003735 ... P62654 21245352
    173101 4v83:CK (3.5) BS02 MG ? GO:0003735 ... P62654 21245352
    173102 4v83:CL (3.5) BS01 rna ? GO:0000049 ... P61941 21245352
    173103 4v83:CL (3.5) BS02 MG ? GO:0000049 ... P61941 21245352
    173104 4v83:CM (3.5) BS01 rna ? GO:0000049 ... P62655 21245352
    173105 4v83:CN (3.5) BS01 rna ? GO:0003735 ... P62656 21245352
    173106 4v83:CN (3.5) BS02 ZN ? GO:0003735 ... P62656 21245352
    173107 4v83:CO (3.5) BS01 rna ? GO:0003735 ... P62657 21245352
    173108 4v83:CO (3.5) BS02 rna ? GO:0003735 ... P62657 21245352
    173109 4v83:CO (3.5) BS03 MG ? GO:0003735 ... P62657 21245352
    173110 4v83:CP (3.5) BS01 rna ? GO:0003735 ... P62238 21245352
    173111 4v83:CQ (3.5) BS01 rna ? GO:0003735 ... P62658 21245352
    173112 4v83:CR (3.5) BS01 rna ? GO:0003735 ... P62659 21245352
    173113 4v83:CS (3.5) BS01 rna ? GO:0003723 ... P62660 21245352
    173114 4v83:CT (3.5) BS01 rna ? GO:0003723 ... P62661 21245352
    173115 4v83:D2 (3.5) BS01 rna ? GO:0003735 ... P62652 21245352
    173116 4v83:D2 (3.5) BS02 MG ? GO:0003735 ... P62652 21245352
    173117 4v83:D3 (3.5) BS01 rna ? GO:0003735 ... Q72GW3 21245352
    173118 4v83:D4 (3.5) BS01 rna ? GO:0003735 ... P80340 21245352
    173119 4v83:D4 (3.5) BS02 MG ? GO:0003735 ... P80340 21245352
    173120 4v83:D5 (3.5) BS01 rna ? GO:0003735 ... Q72L77 21245352
    173121 4v83:DC (3.5) BS01 rna ? GO:0002181 ... Q72I07 21245352
    173122 4v83:DD (3.5) BS01 rna ? GO:0003735 ... Q72I04 21245352
    173123 4v83:DD (3.5) BS02 MG ? GO:0003735 ... Q72I04 21245352
    173124 4v83:DD (3.5) BS03 MG ? GO:0003735 ... Q72I04 21245352
    173125 4v83:DE (3.5) BS01 rna ? GO:0003735 ... Q72I05 21245352
    173126 4v83:DF (3.5) BS01 rna ? GO:0000049 ... Q72I16 21245352
    173127 4v83:DF (3.5) BS02 rna ? GO:0000049 ... Q72I16 21245352
    173128 4v83:DG (3.5) BS01 rna ? GO:0003735 ... Q72I19 21245352
    173129 4v83:DH (3.5) BS01 rna ? GO:0003735 ... Q72GV5 21245352
    173130 4v83:DJ (3.5) BS01 rna ? GO:0003729 ... Q72IN1 21245352
    173131 4v83:DK (3.5) BS01 rna ? GO:0003735 ... Q72I14 21245352
    173132 4v83:DK (3.5) BS02 rna ? GO:0003735 ... Q72I14 21245352
    173133 4v83:DL (3.5) BS01 rna ? GO:0003735 ... Q72I23 21245352
    173134 4v83:DM (3.5) BS01 rna ? GO:0000049 ... Q72I11 21245352
    173135 4v83:DM (3.5) BS02 rna ? GO:0000049 ... Q72I11 21245352
    173136 4v83:DN (3.5) BS01 rna ? GO:0003735 ... Q72I33 21245352
    173137 4v83:DN (3.5) BS02 MG ? GO:0003735 ... Q72I33 21245352
    173138 4v83:DO (3.5) BS01 rna ? GO:0003735 ... Q72I20 21245352
    173139 4v83:DO (3.5) BS02 rna ? GO:0003735 ... Q72I20 21245352
    173140 4v83:DP (3.5) BS01 rna ? GO:0003735 ... Q72JU9 21245352
    173141 4v83:DP (3.5) BS02 rna ? GO:0003735 ... Q72JU9 21245352
    173142 4v83:DP (3.5) BS03 MG ? GO:0003735 ... Q72JU9 21245352
    173143 4v83:DQ (3.5) BS01 rna ? GO:0000027 ... Q72L76 21245352
    173144 4v83:DQ (3.5) BS02 MG ? GO:0000027 ... Q72L76 21245352
    173145 4v83:DR (3.5) BS01 rna ? GO:0003723 ... Q72HR2 21245352
    173146 4v83:DS (3.5) BS01 rna ? GO:0003735 ... Q72I09 21245352
    173147 4v83:DS (3.5) BS02 MG ? GO:0003735 ... Q72I09 21245352
    173148 4v83:DT (3.5) BS01 rna ? GO:0000027 ... Q72I06 21245352
    173149 4v83:DU (3.5) BS01 rna ? GO:0003723 ... Q72I15 21245352
    173150 4v83:DV (3.5) BS01 rna ? GO:0003723 ... Q72IA7 21245352
    173151 4v83:DV (3.5) BS02 rna ? GO:0003723 ... Q72IA7 21245352
    173152 4v83:DW (3.5) BS01 rna ? GO:0003735 ... Q72HR3 21245352
    173153 4v83:DW (3.5) BS02 rna ? GO:0003735 ... Q72HR3 21245352
    173154 4v83:DX (3.5) BS01 rna ? GO:0005840 ... Q72G84 21245352
    173155 4v83:DY (3.5) BS01 rna ? GO:0003735 ... Q72I12 21245352
    173156 4v83:DZ (3.5) BS01 rna ? GO:0003735 ... Q72I22 21245352
    173157 4v84:AB (3.4) BS01 rna ? GO:0003735 ... P62662 21245352
    173158 4v84:AD (3.4) BS01 rna ? GO:0003723 ... P62664 21245352
    173159 4v84:AD (3.4) BS02 MG ? GO:0003723 ... P62664 21245352
    173160 4v84:AE (3.4) BS01 rna ? GO:0003723 ... P62665 21245352
    173161 4v84:AF (3.4) BS01 rna ? GO:0003735 ... P62666 21245352
    173162 4v84:AG (3.4) BS01 rna ? GO:0000028 ... P62667 21245352
    173163 4v84:AH (3.4) BS01 rna ? GO:0003735 ... P62668 21245352
    173164 4v84:AI (3.4) BS01 rna ? GO:0000049 ... P62669 21245352
    173165 4v84:AI (3.4) BS02 rna ? GO:0000049 ... P62669 21245352
    173166 4v84:AJ (3.4) BS01 rna ? GO:0000049 ... P62653 21245352
    173167 4v84:AK (3.4) BS01 rna ? GO:0003735 ... P62654 21245352
    173168 4v84:AL (3.4) BS01 rna ? GO:0000049 ... P61941 21245352
    173169 4v84:AM (3.4) BS01 rna ? GO:0000049 ... P62655 21245352
    173170 4v84:AN (3.4) BS01 rna ? GO:0003735 ... P62656 21245352
    173171 4v84:AN (3.4) BS02 ZN ? GO:0003735 ... P62656 21245352
    173172 4v84:AO (3.4) BS01 rna ? GO:0003735 ... P62657 21245352
    173173 4v84:AO (3.4) BS02 rna ? GO:0003735 ... P62657 21245352
    173174 4v84:AP (3.4) BS01 rna ? GO:0003735 ... P62238 21245352
    173175 4v84:AQ (3.4) BS01 rna ? GO:0003735 ... P62658 21245352
    173176 4v84:AR (3.4) BS01 rna ? GO:0003735 ... P62659 21245352
    173177 4v84:AS (3.4) BS01 rna ? GO:0003723 ... P62660 21245352
    173178 4v84:AT (3.4) BS01 rna ? GO:0003723 ... P62661 21245352
    173179 4v84:B2 (3.4) BS01 rna ? GO:0003735 ... P62652 21245352
    173180 4v84:B3 (3.4) BS01 rna ? GO:0003735 ... Q72GW3 21245352
    173181 4v84:B4 (3.4) BS01 rna ? GO:0003735 ... P80340 21245352
    173182 4v84:B5 (3.4) BS01 rna ? GO:0003735 ... Q72L77 21245352
    173183 4v84:BC (3.4) BS01 rna ? GO:0002181 ... Q72I07 21245352
    173184 4v84:BD (3.4) BS01 rna ? GO:0003735 ... Q72I04 21245352
    173185 4v84:BE (3.4) BS01 rna ? GO:0003735 ... Q72I05 21245352
    173186 4v84:BF (3.4) BS01 rna ? GO:0000049 ... Q72I16 21245352
    173187 4v84:BF (3.4) BS02 rna ? GO:0000049 ... Q72I16 21245352
    173188 4v84:BG (3.4) BS01 rna ? GO:0003735 ... Q72I19 21245352
    173189 4v84:BH (3.4) BS01 rna ? GO:0003735 ... Q72GV5 21245352
    173190 4v84:BJ (3.4) BS01 rna ? GO:0003729 ... Q72IN1 21245352
    173191 4v84:BK (3.4) BS01 rna ? GO:0003735 ... Q72I14 21245352
    173192 4v84:BK (3.4) BS02 rna ? GO:0003735 ... Q72I14 21245352
    173193 4v84:BL (3.4) BS01 rna ? GO:0003735 ... Q72I23 21245352
    173194 4v84:BM (3.4) BS01 rna ? GO:0000049 ... Q72I11 21245352
    173195 4v84:BM (3.4) BS02 rna ? GO:0000049 ... Q72I11 21245352
    173196 4v84:BN (3.4) BS01 rna ? GO:0003735 ... Q72I33 21245352
    173197 4v84:BO (3.4) BS01 rna ? GO:0003735 ... Q72I20 21245352
    173198 4v84:BO (3.4) BS02 rna ? GO:0003735 ... Q72I20 21245352
    173199 4v84:BP (3.4) BS01 rna ? GO:0003735 ... Q72JU9 21245352
    173200 4v84:BP (3.4) BS02 rna ? GO:0003735 ... Q72JU9 21245352
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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