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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172601 4v7x:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    172602 4v7x:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    172603 4v7x:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172604 4v7x:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172605 4v7x:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172606 4v7x:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172607 4v7x:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172608 4v7y:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    172609 4v7y:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    172610 4v7y:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    172611 4v7y:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172612 4v7y:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172613 4v7y:AG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    172614 4v7y:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172615 4v7y:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    172616 4v7y:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172617 4v7y:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    172618 4v7y:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172619 4v7y:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    172620 4v7y:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    172621 4v7y:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172622 4v7y:AN (3.0) BS02 ZN N/A GO:0003735 ... N/A 20876130
    172623 4v7y:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172624 4v7y:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172625 4v7y:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172626 4v7y:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172627 4v7y:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172628 4v7y:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172629 4v7y:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    172630 4v7y:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    172631 4v7y:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    172632 4v7y:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    172633 4v7y:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172634 4v7y:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172635 4v7y:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    172636 4v7y:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    172637 4v7y:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    172638 4v7y:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    172639 4v7y:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172640 4v7y:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    172641 4v7y:BD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    172642 4v7y:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172643 4v7y:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172644 4v7y:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20876130
    172645 4v7y:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172646 4v7y:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172647 4v7y:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172648 4v7y:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172649 4v7y:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    172650 4v7y:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172651 4v7y:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172652 4v7y:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172653 4v7y:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    172654 4v7y:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    172655 4v7y:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172656 4v7y:BR (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 20876130
    172657 4v7y:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172658 4v7y:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172659 4v7y:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    172660 4v7y:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    172661 4v7y:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    172662 4v7y:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    172663 4v7y:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172664 4v7y:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172665 4v7y:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172666 4v7y:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172667 4v7y:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172668 4v7y:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    172669 4v7y:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    172670 4v7y:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    172671 4v7y:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172672 4v7y:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172673 4v7y:CG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    172674 4v7y:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172675 4v7y:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    172676 4v7y:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172677 4v7y:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    172678 4v7y:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172679 4v7y:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    172680 4v7y:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172681 4v7y:CN (3.0) BS02 ZN N/A GO:0003735 ... N/A 20876130
    172682 4v7y:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172683 4v7y:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172684 4v7y:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172685 4v7y:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172686 4v7y:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172687 4v7y:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172688 4v7y:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    172689 4v7y:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    172690 4v7y:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    172691 4v7y:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    172692 4v7y:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172693 4v7y:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172694 4v7y:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20876130
    172695 4v7y:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    172696 4v7y:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    172697 4v7y:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    172698 4v7y:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    172699 4v7y:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172700 4v7y:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    172701 4v7y:DD (3.0) BS02 rna ? GO:0002181 ... P60405 20876130
    172702 4v7y:DD (3.0) BS03 MG ? GO:0002181 ... P60405 20876130
    172703 4v7y:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172704 4v7y:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172705 4v7y:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172706 4v7y:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172707 4v7y:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172708 4v7y:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172709 4v7y:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    172710 4v7y:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172711 4v7y:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172712 4v7y:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172713 4v7y:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    172714 4v7y:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    172715 4v7y:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172716 4v7y:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172717 4v7y:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172718 4v7y:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    172719 4v7y:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    172720 4v7y:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    172721 4v7y:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    172722 4v7y:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172723 4v7y:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172724 4v7y:DX (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 20876130
    172725 4v7y:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172726 4v7y:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172727 4v7y:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172728 4v7z:AB (3.1) BS01 rna ? GO:0003735 ... P80371 20876130
    172729 4v7z:AC (3.1) BS01 rna ? GO:0003676 ... P80372 20876130
    172730 4v7z:AD (3.1) BS01 rna ? GO:0003723 ... P80373 20876130
    172731 4v7z:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 20876130
    172732 4v7z:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172733 4v7z:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172734 4v7z:AG (3.1) BS01 rna ? GO:0000028 ... P17291 20876130
    172735 4v7z:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172736 4v7z:AI (3.1) BS01 rna ? GO:0000049 ... P80374 20876130
    172737 4v7z:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172738 4v7z:AK (3.1) BS01 rna ? GO:0003735 ... P80376 20876130
    172739 4v7z:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172740 4v7z:AM (3.1) BS01 rna ? GO:0000049 ... P80377 20876130
    172741 4v7z:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172742 4v7z:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172743 4v7z:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172744 4v7z:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172745 4v7z:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172746 4v7z:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172747 4v7z:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172748 4v7z:AT (3.1) BS01 rna ? GO:0003723 ... P80380 20876130
    172749 4v7z:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 20876130
    172750 4v7z:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 20876130
    172751 4v7z:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 20876130
    172752 4v7z:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172753 4v7z:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172754 4v7z:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20876130
    172755 4v7z:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 20876130
    172756 4v7z:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 20876130
    172757 4v7z:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 20876130
    172758 4v7z:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172759 4v7z:BD (3.1) BS01 rna ? GO:0002181 ... P60405 20876130
    172760 4v7z:BD (3.1) BS02 rna ? GO:0002181 ... P60405 20876130
    172761 4v7z:BD (3.1) BS03 MG ? GO:0002181 ... P60405 20876130
    172762 4v7z:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172763 4v7z:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172764 4v7z:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172765 4v7z:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172766 4v7z:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172767 4v7z:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172768 4v7z:BN (3.1) BS01 rna ? GO:0003729 ... P60488 20876130
    172769 4v7z:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172770 4v7z:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172771 4v7z:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172772 4v7z:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 20876130
    172773 4v7z:BQ (3.1) BS02 MG ? GO:0000049 ... P60489 20876130
    172774 4v7z:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172775 4v7z:BR (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 20876130
    172776 4v7z:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172777 4v7z:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172778 4v7z:BT (3.1) BS01 rna ? GO:0003735 ... P60490 20876130
    172779 4v7z:BT (3.1) BS02 rna ? GO:0003735 ... P60490 20876130
    172780 4v7z:BU (3.1) BS01 rna ? GO:0000027 ... P60491 20876130
    172781 4v7z:BV (3.1) BS01 rna ? GO:0003723 ... P60492 20876130
    172782 4v7z:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172783 4v7z:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172784 4v7z:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172785 4v7z:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172786 4v7z:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172787 4v7z:CB (3.1) BS01 rna ? GO:0003735 ... P80371 20876130
    172788 4v7z:CC (3.1) BS01 rna ? GO:0003676 ... P80372 20876130
    172789 4v7z:CD (3.1) BS01 rna ? GO:0003723 ... P80373 20876130
    172790 4v7z:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 20876130
    172791 4v7z:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172792 4v7z:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172793 4v7z:CG (3.1) BS01 rna ? GO:0000028 ... P17291 20876130
    172794 4v7z:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    172795 4v7z:CI (3.1) BS01 rna ? GO:0000049 ... P80374 20876130
    172796 4v7z:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172797 4v7z:CK (3.1) BS01 rna ? GO:0003735 ... P80376 20876130
    172798 4v7z:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172799 4v7z:CM (3.1) BS01 rna ? GO:0000049 ... P80377 20876130
    172800 4v7z:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 20876130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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