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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172401 4v7w:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    172402 4v7w:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    172403 4v7w:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172404 4v7w:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    172405 4v7w:BD (3.0) BS02 rna ? GO:0002181 ... P60405 20876130
    172406 4v7w:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172407 4v7w:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172408 4v7w:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172409 4v7w:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172410 4v7w:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172411 4v7w:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172412 4v7w:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    172413 4v7w:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172414 4v7w:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172415 4v7w:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172416 4v7w:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    172417 4v7w:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    172418 4v7w:BQ (3.0) BS03 MG ? GO:0000049 ... P60489 20876130
    172419 4v7w:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172420 4v7w:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172421 4v7w:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172422 4v7w:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    172423 4v7w:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    172424 4v7w:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    172425 4v7w:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    172426 4v7w:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172427 4v7w:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172428 4v7w:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172429 4v7w:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172430 4v7w:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172431 4v7w:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    172432 4v7w:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    172433 4v7w:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    172434 4v7w:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172435 4v7w:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172436 4v7w:CG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    172437 4v7w:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172438 4v7w:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    172439 4v7w:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172440 4v7w:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    172441 4v7w:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172442 4v7w:CL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    172443 4v7w:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    172444 4v7w:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172445 4v7w:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172446 4v7w:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172447 4v7w:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172448 4v7w:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172449 4v7w:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172450 4v7w:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172451 4v7w:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    172452 4v7w:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    172453 4v7w:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    172454 4v7w:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    172455 4v7w:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172456 4v7w:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172457 4v7w:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    172458 4v7w:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    172459 4v7w:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    172460 4v7w:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    172461 4v7w:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172462 4v7w:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    172463 4v7w:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    172464 4v7w:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172465 4v7w:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172466 4v7w:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172467 4v7w:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172468 4v7w:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172469 4v7w:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172470 4v7w:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    172471 4v7w:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172472 4v7w:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172473 4v7w:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172474 4v7w:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    172475 4v7w:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    172476 4v7w:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172477 4v7w:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172478 4v7w:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172479 4v7w:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    172480 4v7w:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    172481 4v7w:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    172482 4v7w:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    172483 4v7w:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172484 4v7w:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172485 4v7w:DX (3.0) BS02 MG ? GO:0000027 ... Q5SHP0 20876130
    172486 4v7w:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172487 4v7w:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172488 4v7w:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172489 4v7x:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    172490 4v7x:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    172491 4v7x:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    172492 4v7x:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 20876130
    172493 4v7x:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172494 4v7x:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172495 4v7x:AG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    172496 4v7x:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172497 4v7x:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    172498 4v7x:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172499 4v7x:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    172500 4v7x:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172501 4v7x:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    172502 4v7x:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    172503 4v7x:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172504 4v7x:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172505 4v7x:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172506 4v7x:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172507 4v7x:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172508 4v7x:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172509 4v7x:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172510 4v7x:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    172511 4v7x:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    172512 4v7x:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    172513 4v7x:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    172514 4v7x:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172515 4v7x:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172516 4v7x:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20876130
    172517 4v7x:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    172518 4v7x:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    172519 4v7x:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    172520 4v7x:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    172521 4v7x:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172522 4v7x:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    172523 4v7x:BD (3.0) BS02 rna ? GO:0002181 ... P60405 20876130
    172524 4v7x:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172525 4v7x:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172526 4v7x:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20876130
    172527 4v7x:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172528 4v7x:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172529 4v7x:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172530 4v7x:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172531 4v7x:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    172532 4v7x:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172533 4v7x:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172534 4v7x:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172535 4v7x:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    172536 4v7x:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    172537 4v7x:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172538 4v7x:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172539 4v7x:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172540 4v7x:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    172541 4v7x:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    172542 4v7x:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20876130
    172543 4v7x:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20876130
    172544 4v7x:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20876130
    172545 4v7x:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20876130
    172546 4v7x:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20876130
    172547 4v7x:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20876130
    172548 4v7x:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20876130
    172549 4v7x:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    172550 4v7x:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    172551 4v7x:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    172552 4v7x:CD (3.0) BS02 ZN ? GO:0003723 ... P80373 20876130
    172553 4v7x:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172554 4v7x:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172555 4v7x:CG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    172556 4v7x:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172557 4v7x:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    172558 4v7x:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172559 4v7x:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    172560 4v7x:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172561 4v7x:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    172562 4v7x:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172563 4v7x:CN (3.0) BS02 ZN N/A GO:0003735 ... N/A 20876130
    172564 4v7x:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172565 4v7x:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172566 4v7x:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172567 4v7x:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172568 4v7x:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172569 4v7x:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172570 4v7x:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    172571 4v7x:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    172572 4v7x:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    172573 4v7x:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    172574 4v7x:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172575 4v7x:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172576 4v7x:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20876130
    172577 4v7x:D4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    172578 4v7x:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    172579 4v7x:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20876130
    172580 4v7x:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20876130
    172581 4v7x:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20876130
    172582 4v7x:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20876130
    172583 4v7x:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20876130
    172584 4v7x:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20876130
    172585 4v7x:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20876130
    172586 4v7x:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20876130
    172587 4v7x:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20876130
    172588 4v7x:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172589 4v7x:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20876130
    172590 4v7x:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20876130
    172591 4v7x:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20876130
    172592 4v7x:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20876130
    172593 4v7x:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20876130
    172594 4v7x:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20876130
    172595 4v7x:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20876130
    172596 4v7x:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20876130
    172597 4v7x:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20876130
    172598 4v7x:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20876130
    172599 4v7x:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20876130
    172600 4v7x:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20876130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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