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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172201 4v7u:CD (3.1) BS02 rna ? GO:0000028 ... P0A7V8 20876128
    172202 4v7u:CE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    172203 4v7u:CF (3.1) BS01 rna ? GO:0003735 ... P02358 20876128
    172204 4v7u:CG (3.1) BS01 rna ? GO:0003723 ... P02359 20876128
    172205 4v7u:CH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    172206 4v7u:CI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    172207 4v7u:CJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    172208 4v7u:CK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    172209 4v7u:CL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    172210 4v7u:CM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    172211 4v7u:CN (3.1) BS01 rna ? GO:0000028 ... P0AG59 20876128
    172212 4v7u:CO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    172213 4v7u:CO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    172214 4v7u:CP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    172215 4v7u:CQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 20876128
    172216 4v7u:CR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    172217 4v7u:CS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    172218 4v7u:CT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    172219 4v7u:CU (3.1) BS01 rna ? GO:0003735 ... P68679 20876128
    172220 4v7u:D0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    172221 4v7u:D1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    172222 4v7u:D2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    172223 4v7u:D3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    172224 4v7u:D4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    172225 4v7u:DC (3.1) BS01 rna ? GO:0000027 ... P60422 20876128
    172226 4v7u:DD (3.1) BS01 rna ? GO:0000027 ... P60438 20876128
    172227 4v7u:DE (3.1) BS01 rna ? GO:0001070 ... P60723 20876128
    172228 4v7u:DF (3.1) BS01 rna ? GO:0000027 ... P62399 20876128
    172229 4v7u:DF (3.1) BS02 rna ? GO:0000027 ... P62399 20876128
    172230 4v7u:DG (3.1) BS01 rna ? GO:0000027 ... P0AG55 20876128
    172231 4v7u:DH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172232 4v7u:DI (3.1) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172233 4v7u:DJ (3.1) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172234 4v7u:DK (3.1) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172235 4v7u:DK (3.1) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172236 4v7u:DL (3.1) BS01 rna ? GO:0002181 ... P02413 20876128
    172237 4v7u:DM (3.1) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172238 4v7u:DM (3.1) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172239 4v7u:DN (3.1) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172240 4v7u:DO (3.1) BS01 rna ? GO:0002181 ... P0C018 20876128
    172241 4v7u:DO (3.1) BS02 rna ? GO:0002181 ... P0C018 20876128
    172242 4v7u:DP (3.1) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172243 4v7u:DP (3.1) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172244 4v7u:DQ (3.1) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172245 4v7u:DR (3.1) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172246 4v7u:DS (3.1) BS01 rna ? GO:0002181 ... P61175 20876128
    172247 4v7u:DT (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172248 4v7u:DU (3.1) BS01 rna ? GO:0000027 ... P60624 20876128
    172249 4v7u:DV (3.1) BS01 rna ? GO:0000027 ... P68919 20876128
    172250 4v7u:DV (3.1) BS02 rna ? GO:0000027 ... P68919 20876128
    172251 4v7u:DW (3.1) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172252 4v7u:DW (3.1) BS02 rna ? GO:0000027 ... P0A7L8 20876128
    172253 4v7u:DX (3.1) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172254 4v7u:DY (3.1) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172255 4v7u:DZ (3.1) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172256 4v7u:DZ (3.1) BS02 rna ? GO:0000027 ... P0AG51 20876128
    172257 4v7v:AB (3.2891) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    172258 4v7v:AD (3.2891) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    172259 4v7v:AE (3.2891) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    172260 4v7v:AF (3.2891) BS01 rna ? GO:0003735 ... P02358 20876128
    172261 4v7v:AG (3.2891) BS01 rna ? GO:0003723 ... P02359 20876128
    172262 4v7v:AH (3.2891) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    172263 4v7v:AI (3.2891) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    172264 4v7v:AJ (3.2891) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    172265 4v7v:AK (3.2891) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    172266 4v7v:AL (3.2891) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    172267 4v7v:AM (3.2891) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    172268 4v7v:AN (3.2891) BS01 rna ? GO:0000028 ... P0AG59 20876128
    172269 4v7v:AO (3.2891) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    172270 4v7v:AO (3.2891) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    172271 4v7v:AP (3.2891) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    172272 4v7v:AQ (3.2891) BS01 rna ? GO:0000028 ... P0AG63 20876128
    172273 4v7v:AR (3.2891) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    172274 4v7v:AS (3.2891) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    172275 4v7v:AT (3.2891) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    172276 4v7v:AU (3.2891) BS01 rna ? GO:0003735 ... P68679 20876128
    172277 4v7v:B0 (3.2891) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    172278 4v7v:B1 (3.2891) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    172279 4v7v:B2 (3.2891) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    172280 4v7v:B3 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    172281 4v7v:B4 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    172282 4v7v:B4 (3.2891) BS02 ZN ? GO:0002181 ... P0A7Q6 20876128
    172283 4v7v:BC (3.2891) BS01 rna ? GO:0000027 ... P60422 20876128
    172284 4v7v:BD (3.2891) BS01 rna ? GO:0000027 ... P60438 20876128
    172285 4v7v:BE (3.2891) BS01 rna ? GO:0001070 ... P60723 20876128
    172286 4v7v:BF (3.2891) BS01 rna ? GO:0000027 ... P62399 20876128
    172287 4v7v:BF (3.2891) BS02 rna ? GO:0000027 ... P62399 20876128
    172288 4v7v:BG (3.2891) BS01 rna ? GO:0000027 ... P0AG55 20876128
    172289 4v7v:BH (3.2891) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172290 4v7v:BI (3.2891) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172291 4v7v:BJ (3.2891) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172292 4v7v:BK (3.2891) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172293 4v7v:BK (3.2891) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172294 4v7v:BL (3.2891) BS01 rna ? GO:0002181 ... P02413 20876128
    172295 4v7v:BM (3.2891) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172296 4v7v:BM (3.2891) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172297 4v7v:BN (3.2891) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172298 4v7v:BO (3.2891) BS01 rna ? GO:0002181 ... P0C018 20876128
    172299 4v7v:BO (3.2891) BS02 rna ? GO:0002181 ... P0C018 20876128
    172300 4v7v:BP (3.2891) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172301 4v7v:BP (3.2891) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172302 4v7v:BQ (3.2891) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172303 4v7v:BR (3.2891) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172304 4v7v:BS (3.2891) BS01 rna ? GO:0002181 ... P61175 20876128
    172305 4v7v:BT (3.2891) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172306 4v7v:BU (3.2891) BS01 rna ? GO:0000027 ... P60624 20876128
    172307 4v7v:BV (3.2891) BS01 rna ? GO:0000027 ... P68919 20876128
    172308 4v7v:BV (3.2891) BS02 rna ? GO:0000027 ... P68919 20876128
    172309 4v7v:BW (3.2891) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172310 4v7v:BX (3.2891) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172311 4v7v:BY (3.2891) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172312 4v7v:BZ (3.2891) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172313 4v7v:BZ (3.2891) BS02 rna ? GO:0000027 ... P0AG51 20876128
    172314 4v7v:CB (3.2891) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    172315 4v7v:CB (3.2891) BS02 rna ? GO:0000028 ... P0A7V0 20876128
    172316 4v7v:CD (3.2891) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    172317 4v7v:CE (3.2891) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    172318 4v7v:CF (3.2891) BS01 rna ? GO:0003735 ... P02358 20876128
    172319 4v7v:CG (3.2891) BS01 rna ? GO:0003723 ... P02359 20876128
    172320 4v7v:CH (3.2891) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    172321 4v7v:CI (3.2891) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    172322 4v7v:CJ (3.2891) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    172323 4v7v:CK (3.2891) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    172324 4v7v:CL (3.2891) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    172325 4v7v:CM (3.2891) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    172326 4v7v:CN (3.2891) BS01 rna ? GO:0000028 ... P0AG59 20876128
    172327 4v7v:CO (3.2891) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    172328 4v7v:CO (3.2891) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    172329 4v7v:CP (3.2891) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    172330 4v7v:CQ (3.2891) BS01 rna ? GO:0000028 ... P0AG63 20876128
    172331 4v7v:CR (3.2891) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    172332 4v7v:CS (3.2891) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    172333 4v7v:CT (3.2891) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    172334 4v7v:CU (3.2891) BS01 rna ? GO:0003735 ... P68679 20876128
    172335 4v7v:D0 (3.2891) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    172336 4v7v:D1 (3.2891) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    172337 4v7v:D2 (3.2891) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    172338 4v7v:D3 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    172339 4v7v:D4 (3.2891) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    172340 4v7v:DC (3.2891) BS01 rna ? GO:0000027 ... P60422 20876128
    172341 4v7v:DD (3.2891) BS01 rna ? GO:0000027 ... P60438 20876128
    172342 4v7v:DE (3.2891) BS01 rna ? GO:0001070 ... P60723 20876128
    172343 4v7v:DF (3.2891) BS01 rna ? GO:0000027 ... P62399 20876128
    172344 4v7v:DF (3.2891) BS02 rna ? GO:0000027 ... P62399 20876128
    172345 4v7v:DG (3.2891) BS01 rna ? GO:0000027 ... P0AG55 20876128
    172346 4v7v:DH (3.2891) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172347 4v7v:DI (3.2891) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172348 4v7v:DJ (3.2891) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172349 4v7v:DK (3.2891) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172350 4v7v:DK (3.2891) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172351 4v7v:DL (3.2891) BS01 rna ? GO:0002181 ... P02413 20876128
    172352 4v7v:DM (3.2891) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172353 4v7v:DM (3.2891) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172354 4v7v:DN (3.2891) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172355 4v7v:DO (3.2891) BS01 rna ? GO:0002181 ... P0C018 20876128
    172356 4v7v:DO (3.2891) BS02 rna ? GO:0002181 ... P0C018 20876128
    172357 4v7v:DP (3.2891) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172358 4v7v:DP (3.2891) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172359 4v7v:DQ (3.2891) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172360 4v7v:DR (3.2891) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172361 4v7v:DS (3.2891) BS01 rna ? GO:0002181 ... P61175 20876128
    172362 4v7v:DT (3.2891) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172363 4v7v:DU (3.2891) BS01 rna ? GO:0000027 ... P60624 20876128
    172364 4v7v:DV (3.2891) BS01 rna ? GO:0000027 ... P68919 20876128
    172365 4v7v:DV (3.2891) BS02 rna ? GO:0000027 ... P68919 20876128
    172366 4v7v:DW (3.2891) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172367 4v7v:DW (3.2891) BS02 rna ? GO:0000027 ... P0A7L8 20876128
    172368 4v7v:DX (3.2891) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172369 4v7v:DY (3.2891) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172370 4v7v:DZ (3.2891) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172371 4v7v:DZ (3.2891) BS02 rna ? GO:0000027 ... P0AG51 20876128
    172372 4v7w:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20876130
    172373 4v7w:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20876130
    172374 4v7w:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20876130
    172375 4v7w:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 20876130
    172376 4v7w:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20876130
    172377 4v7w:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20876130
    172378 4v7w:AG (3.0) BS01 rna ? GO:0000028 ... P17291 20876130
    172379 4v7w:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172380 4v7w:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20876130
    172381 4v7w:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20876130
    172382 4v7w:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20876130
    172383 4v7w:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20876130
    172384 4v7w:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20876130
    172385 4v7w:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20876130
    172386 4v7w:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172387 4v7w:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20876130
    172388 4v7w:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20876130
    172389 4v7w:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20876130
    172390 4v7w:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20876130
    172391 4v7w:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20876130
    172392 4v7w:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20876130
    172393 4v7w:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20876130
    172394 4v7w:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20876130
    172395 4v7w:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20876130
    172396 4v7w:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20876130
    172397 4v7w:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20876130
    172398 4v7w:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20876130
    172399 4v7w:B4 (3.0) BS01 rna ? GO:0003735 ... Q5SJE1 20876130
    172400 4v7w:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20876130
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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