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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    172001 4v7s:DH (3.2547) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172002 4v7s:DI (3.2547) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172003 4v7s:DJ (3.2547) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172004 4v7s:DK (3.2547) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172005 4v7s:DK (3.2547) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172006 4v7s:DL (3.2547) BS01 rna ? GO:0002181 ... P02413 20876128
    172007 4v7s:DM (3.2547) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172008 4v7s:DM (3.2547) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172009 4v7s:DN (3.2547) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172010 4v7s:DO (3.2547) BS01 rna ? GO:0002181 ... P0C018 20876128
    172011 4v7s:DO (3.2547) BS02 rna ? GO:0002181 ... P0C018 20876128
    172012 4v7s:DP (3.2547) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172013 4v7s:DP (3.2547) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172014 4v7s:DQ (3.2547) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172015 4v7s:DR (3.2547) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172016 4v7s:DS (3.2547) BS01 rna ? GO:0002181 ... P61175 20876128
    172017 4v7s:DT (3.2547) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172018 4v7s:DU (3.2547) BS01 rna ? GO:0000027 ... P60624 20876128
    172019 4v7s:DV (3.2547) BS01 rna ? GO:0000027 ... P68919 20876128
    172020 4v7s:DV (3.2547) BS02 rna ? GO:0000027 ... P68919 20876128
    172021 4v7s:DW (3.2547) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172022 4v7s:DW (3.2547) BS02 rna ? GO:0000027 ... P0A7L8 20876128
    172023 4v7s:DX (3.2547) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172024 4v7s:DY (3.2547) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172025 4v7s:DZ (3.2547) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172026 4v7s:DZ (3.2547) BS02 rna ? GO:0000027 ... P0AG51 20876128
    172027 4v7t:AB (3.1942) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    172028 4v7t:AD (3.1942) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    172029 4v7t:AE (3.1942) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    172030 4v7t:AF (3.1942) BS01 rna ? GO:0003735 ... P02358 20876128
    172031 4v7t:AG (3.1942) BS01 rna ? GO:0003723 ... P02359 20876128
    172032 4v7t:AH (3.1942) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    172033 4v7t:AI (3.1942) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    172034 4v7t:AJ (3.1942) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    172035 4v7t:AK (3.1942) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    172036 4v7t:AK (3.1942) BS02 rna ? GO:0002181 ... P0A7R9 20876128
    172037 4v7t:AL (3.1942) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    172038 4v7t:AM (3.1942) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    172039 4v7t:AN (3.1942) BS01 rna ? GO:0000028 ... P0AG59 20876128
    172040 4v7t:AO (3.1942) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    172041 4v7t:AO (3.1942) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    172042 4v7t:AP (3.1942) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    172043 4v7t:AQ (3.1942) BS01 rna ? GO:0000028 ... P0AG63 20876128
    172044 4v7t:AR (3.1942) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    172045 4v7t:AS (3.1942) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    172046 4v7t:AT (3.1942) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    172047 4v7t:AU (3.1942) BS01 rna ? GO:0003735 ... P68679 20876128
    172048 4v7t:B0 (3.1942) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    172049 4v7t:B1 (3.1942) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    172050 4v7t:B2 (3.1942) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    172051 4v7t:B3 (3.1942) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    172052 4v7t:B4 (3.1942) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    172053 4v7t:B4 (3.1942) BS02 ZN ? GO:0002181 ... P0A7Q6 20876128
    172054 4v7t:BC (3.1942) BS01 rna ? GO:0000027 ... P60422 20876128
    172055 4v7t:BD (3.1942) BS01 rna ? GO:0000027 ... P60438 20876128
    172056 4v7t:BE (3.1942) BS01 rna ? GO:0001070 ... P60723 20876128
    172057 4v7t:BF (3.1942) BS01 rna ? GO:0000027 ... P62399 20876128
    172058 4v7t:BF (3.1942) BS02 rna ? GO:0000027 ... P62399 20876128
    172059 4v7t:BG (3.1942) BS01 rna ? GO:0000027 ... P0AG55 20876128
    172060 4v7t:BH (3.1942) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172061 4v7t:BI (3.1942) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172062 4v7t:BJ (3.1942) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172063 4v7t:BK (3.1942) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172064 4v7t:BK (3.1942) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172065 4v7t:BL (3.1942) BS01 rna ? GO:0002181 ... P02413 20876128
    172066 4v7t:BM (3.1942) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172067 4v7t:BM (3.1942) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172068 4v7t:BN (3.1942) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172069 4v7t:BO (3.1942) BS01 rna ? GO:0002181 ... P0C018 20876128
    172070 4v7t:BO (3.1942) BS02 rna ? GO:0002181 ... P0C018 20876128
    172071 4v7t:BP (3.1942) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172072 4v7t:BP (3.1942) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172073 4v7t:BQ (3.1942) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172074 4v7t:BR (3.1942) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172075 4v7t:BS (3.1942) BS01 rna ? GO:0002181 ... P61175 20876128
    172076 4v7t:BT (3.1942) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172077 4v7t:BU (3.1942) BS01 rna ? GO:0000027 ... P60624 20876128
    172078 4v7t:BV (3.1942) BS01 rna ? GO:0000027 ... P68919 20876128
    172079 4v7t:BV (3.1942) BS02 rna ? GO:0000027 ... P68919 20876128
    172080 4v7t:BW (3.1942) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172081 4v7t:BX (3.1942) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172082 4v7t:BY (3.1942) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172083 4v7t:BZ (3.1942) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172084 4v7t:BZ (3.1942) BS02 rna ? GO:0000027 ... P0AG51 20876128
    172085 4v7t:CB (3.1942) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    172086 4v7t:CB (3.1942) BS02 rna ? GO:0000028 ... P0A7V0 20876128
    172087 4v7t:CD (3.1942) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    172088 4v7t:CE (3.1942) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    172089 4v7t:CF (3.1942) BS01 rna ? GO:0003735 ... P02358 20876128
    172090 4v7t:CG (3.1942) BS01 rna ? GO:0003723 ... P02359 20876128
    172091 4v7t:CH (3.1942) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    172092 4v7t:CI (3.1942) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    172093 4v7t:CJ (3.1942) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    172094 4v7t:CK (3.1942) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    172095 4v7t:CL (3.1942) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    172096 4v7t:CM (3.1942) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    172097 4v7t:CN (3.1942) BS01 rna ? GO:0000028 ... P0AG59 20876128
    172098 4v7t:CO (3.1942) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    172099 4v7t:CO (3.1942) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    172100 4v7t:CP (3.1942) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    172101 4v7t:CQ (3.1942) BS01 rna ? GO:0000028 ... P0AG63 20876128
    172102 4v7t:CR (3.1942) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    172103 4v7t:CS (3.1942) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    172104 4v7t:CT (3.1942) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    172105 4v7t:CU (3.1942) BS01 rna ? GO:0003735 ... P68679 20876128
    172106 4v7t:D0 (3.1942) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    172107 4v7t:D1 (3.1942) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    172108 4v7t:D2 (3.1942) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    172109 4v7t:D3 (3.1942) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    172110 4v7t:D4 (3.1942) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    172111 4v7t:DC (3.1942) BS01 rna ? GO:0000027 ... P60422 20876128
    172112 4v7t:DD (3.1942) BS01 rna ? GO:0000027 ... P60438 20876128
    172113 4v7t:DE (3.1942) BS01 rna ? GO:0001070 ... P60723 20876128
    172114 4v7t:DF (3.1942) BS01 rna ? GO:0000027 ... P62399 20876128
    172115 4v7t:DF (3.1942) BS02 rna ? GO:0000027 ... P62399 20876128
    172116 4v7t:DG (3.1942) BS01 rna ? GO:0000027 ... P0AG55 20876128
    172117 4v7t:DH (3.1942) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172118 4v7t:DI (3.1942) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172119 4v7t:DJ (3.1942) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172120 4v7t:DK (3.1942) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172121 4v7t:DK (3.1942) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172122 4v7t:DL (3.1942) BS01 rna ? GO:0002181 ... P02413 20876128
    172123 4v7t:DM (3.1942) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172124 4v7t:DM (3.1942) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172125 4v7t:DN (3.1942) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172126 4v7t:DO (3.1942) BS01 rna ? GO:0002181 ... P0C018 20876128
    172127 4v7t:DO (3.1942) BS02 rna ? GO:0002181 ... P0C018 20876128
    172128 4v7t:DP (3.1942) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172129 4v7t:DP (3.1942) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172130 4v7t:DQ (3.1942) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172131 4v7t:DR (3.1942) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172132 4v7t:DS (3.1942) BS01 rna ? GO:0002181 ... P61175 20876128
    172133 4v7t:DT (3.1942) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172134 4v7t:DU (3.1942) BS01 rna ? GO:0000027 ... P60624 20876128
    172135 4v7t:DV (3.1942) BS01 rna ? GO:0000027 ... P68919 20876128
    172136 4v7t:DV (3.1942) BS02 rna ? GO:0000027 ... P68919 20876128
    172137 4v7t:DW (3.1942) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172138 4v7t:DW (3.1942) BS02 rna ? GO:0000027 ... P0A7L8 20876128
    172139 4v7t:DX (3.1942) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172140 4v7t:DY (3.1942) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172141 4v7t:DZ (3.1942) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172142 4v7u:AB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    172143 4v7u:AD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    172144 4v7u:AE (3.1) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    172145 4v7u:AF (3.1) BS01 rna ? GO:0003735 ... P02358 20876128
    172146 4v7u:AG (3.1) BS01 rna ? GO:0003723 ... P02359 20876128
    172147 4v7u:AH (3.1) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    172148 4v7u:AI (3.1) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    172149 4v7u:AJ (3.1) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    172150 4v7u:AK (3.1) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    172151 4v7u:AL (3.1) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    172152 4v7u:AM (3.1) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    172153 4v7u:AN (3.1) BS01 rna ? GO:0000028 ... P0AG59 20876128
    172154 4v7u:AO (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    172155 4v7u:AO (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    172156 4v7u:AP (3.1) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    172157 4v7u:AQ (3.1) BS01 rna ? GO:0000028 ... P0AG63 20876128
    172158 4v7u:AR (3.1) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    172159 4v7u:AS (3.1) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    172160 4v7u:AT (3.1) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    172161 4v7u:AU (3.1) BS01 rna ? GO:0003735 ... P68679 20876128
    172162 4v7u:B0 (3.1) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    172163 4v7u:B1 (3.1) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    172164 4v7u:B2 (3.1) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    172165 4v7u:B3 (3.1) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    172166 4v7u:B4 (3.1) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    172167 4v7u:B4 (3.1) BS02 ZN ? GO:0002181 ... P0A7Q6 20876128
    172168 4v7u:BC (3.1) BS01 rna ? GO:0000027 ... P60422 20876128
    172169 4v7u:BD (3.1) BS01 rna ? GO:0000027 ... P60438 20876128
    172170 4v7u:BE (3.1) BS01 rna ? GO:0001070 ... P60723 20876128
    172171 4v7u:BF (3.1) BS01 rna ? GO:0000027 ... P62399 20876128
    172172 4v7u:BF (3.1) BS02 rna ? GO:0000027 ... P62399 20876128
    172173 4v7u:BG (3.1) BS01 rna ? GO:0000027 ... P0AG55 20876128
    172174 4v7u:BH (3.1) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    172175 4v7u:BI (3.1) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    172176 4v7u:BJ (3.1) BS01 rna ? GO:0002181 ... P0AA10 20876128
    172177 4v7u:BK (3.1) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    172178 4v7u:BK (3.1) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    172179 4v7u:BL (3.1) BS01 rna ? GO:0002181 ... P02413 20876128
    172180 4v7u:BM (3.1) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    172181 4v7u:BM (3.1) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    172182 4v7u:BN (3.1) BS01 rna ? GO:0000027 ... P0AG44 20876128
    172183 4v7u:BO (3.1) BS01 rna ? GO:0002181 ... P0C018 20876128
    172184 4v7u:BO (3.1) BS02 rna ? GO:0002181 ... P0C018 20876128
    172185 4v7u:BP (3.1) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    172186 4v7u:BP (3.1) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    172187 4v7u:BQ (3.1) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    172188 4v7u:BR (3.1) BS01 rna ? GO:0002181 ... P0AG48 20876128
    172189 4v7u:BS (3.1) BS01 rna ? GO:0002181 ... P61175 20876128
    172190 4v7u:BT (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    172191 4v7u:BU (3.1) BS01 rna ? GO:0000027 ... P60624 20876128
    172192 4v7u:BV (3.1) BS01 rna ? GO:0000027 ... P68919 20876128
    172193 4v7u:BV (3.1) BS02 rna ? GO:0000027 ... P68919 20876128
    172194 4v7u:BW (3.1) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    172195 4v7u:BX (3.1) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    172196 4v7u:BY (3.1) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    172197 4v7u:BZ (3.1) BS01 rna ? GO:0000027 ... P0AG51 20876128
    172198 4v7u:BZ (3.1) BS02 rna ? GO:0000027 ... P0AG51 20876128
    172199 4v7u:CB (3.1) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    172200 4v7u:CD (3.1) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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