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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171801 4v7r:BJ (4.0) BS01 rna ? GO:0000027 ... P41805 21109664
    171802 4v7r:BJ (4.0) BS02 rna ? GO:0000027 ... P41805 21109664
    171803 4v7r:BK (4.0) BS01 rna ? GO:0000027 ... P0C0W9 21109664
    171804 4v7r:BK (4.0) BS02 rna ? GO:0000027 ... P0C0W9 21109664
    171805 4v7r:BN (4.0) BS01 rna ? GO:0000027 ... P36105 21109664
    171806 4v7r:BO (4.0) BS01 rna ? GO:0002181 ... P05748 21109664
    171807 4v7r:BO (4.0) BS02 rna ? GO:0002181 ... P05748 21109664
    171808 4v7r:BP (4.0) BS01 rna ? GO:0000470 ... P26784 21109664
    171809 4v7r:BQ (4.0) BS01 rna ? GO:0000448 ... P05740 21109664
    171810 4v7r:BQ (4.0) BS02 rna ? GO:0000448 ... P05740 21109664
    171811 4v7r:BR (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171812 4v7r:BS (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    171813 4v7r:BT (4.0) BS01 rna ? GO:0002181 ... Q02753 21109664
    171814 4v7r:BT (4.0) BS02 rna ? GO:0002181 ... Q02753 21109664
    171815 4v7r:BT (4.0) BS03 OHX ? GO:0002181 ... Q02753 21109664
    171816 4v7r:BU (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171817 4v7r:BV (4.0) BS01 rna ? GO:0002181 ... P04449 21109664
    171818 4v7r:BW (4.0) BS01 rna ? GO:0000027 ... P04456 21109664
    171819 4v7r:BW (4.0) BS02 rna ? GO:0000027 ... P04456 21109664
    171820 4v7r:BX (4.0) BS01 rna ? GO:0002181 ... P05743 21109664
    171821 4v7r:BX (4.0) BS02 rna ? GO:0002181 ... P05743 21109664
    171822 4v7r:BY (4.0) BS01 rna ? GO:0002181 ... P02406 21109664
    171823 4v7r:BY (4.0) BS02 OHX ? GO:0002181 ... P02406 21109664
    171824 4v7r:BZ (4.0) BS01 rna ? GO:0002181 ... P14120 21109664
    171825 4v7r:Ba (4.0) BS01 rna ? GO:0002181 ... P0C2H8 21109664
    171826 4v7r:Bb (4.0) BS01 rna ? GO:0002181 ... P38061 21109664
    171827 4v7r:Bc (4.0) BS01 rna N/A GO:0000463 ... N/A 21109664
    171828 4v7r:Bc (4.0) BS02 rna N/A GO:0000463 ... N/A 21109664
    171829 4v7r:Bd (4.0) BS01 rna ? GO:0000448 ... P49166 21109664
    171830 4v7r:Bd (4.0) BS02 rna ? GO:0000448 ... P49166 21109664
    171831 4v7r:Bd (4.0) BS03 OHX ? GO:0000448 ... P49166 21109664
    171832 4v7r:Bd (4.0) BS04 OHX ? GO:0000448 ... P49166 21109664
    171833 4v7r:Be (4.0) BS01 rna ? GO:0002181 ... P04650 21109664
    171834 4v7r:Be (4.0) BS02 rna ? GO:0002181 ... P04650 21109664
    171835 4v7r:Bf (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171836 4v7r:Bg (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171837 4v7r:Bg (4.0) BS02 OHX N/A GO:0003735 ... N/A 21109664
    171838 4v7r:CA (4.0) BS01 rna ? GO:0000028 ... P32905 21109664
    171839 4v7r:CB (4.0) BS01 rna ? GO:0000054 ... P25443 21109664
    171840 4v7r:CC (4.0) BS01 rna ? GO:0000054 ... P05750 21109664
    171841 4v7r:CD (4.0) BS01 rna ? GO:0000028 ... P26783 21109664
    171842 4v7r:CE (4.0) BS01 rna ? GO:0000462 ... O13516 21109664
    171843 4v7r:CF (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171844 4v7r:CG (4.0) BS01 rna ? GO:0000462 ... P05756 21109664
    171845 4v7r:CH (4.0) BS01 rna ? GO:0000028 ... P06367 21109664
    171846 4v7r:CI (4.0) BS01 rna ? GO:0000028 ... Q01855 21109664
    171847 4v7r:CJ (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171848 4v7r:CL (4.0) BS01 rna N/A GO:0003676 ... N/A 21109664
    171849 4v7r:CM (4.0) BS01 rna ? GO:0000028 ... P07280 21109664
    171850 4v7r:CN (4.0) BS01 rna ? GO:0000462 ... P38701 21109664
    171851 4v7r:CO (4.0) BS01 rna ? GO:0002181 ... P0C0W1 21109664
    171852 4v7r:CP (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171853 4v7r:CR (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 21109664
    171854 4v7r:CS (4.0) BS01 rna ? GO:0002181 ... P41057 21109664
    171855 4v7r:CS (4.0) BS02 OHX ? GO:0002181 ... P41057 21109664
    171856 4v7r:CT (4.0) BS01 rna ? GO:0001965 ... P38011 21109664
    171857 4v7r:CT (4.0) BS02 OHX ? GO:0001965 ... P38011 21109664
    171858 4v7r:DA (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    171859 4v7r:DB (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171860 4v7r:DC (4.0) BS01 rna ? GO:0000027 ... P14126 21109664
    171861 4v7r:DC (4.0) BS02 OHX ? GO:0000027 ... P14126 21109664
    171862 4v7r:DD (4.0) BS01 rna ? GO:0002181 ... P10664 21109664
    171863 4v7r:DD (4.0) BS02 rna ? GO:0002181 ... P10664 21109664
    171864 4v7r:DE (4.0) BS01 rna ? GO:0000027 ... P26321 21109664
    171865 4v7r:DE (4.0) BS02 rna ? GO:0000027 ... P26321 21109664
    171866 4v7r:DE (4.0) BS03 OHX ? GO:0000027 ... P26321 21109664
    171867 4v7r:DF (4.0) BS01 rna ? GO:0000027 ... Q02326 21109664
    171868 4v7r:DF (4.0) BS02 rna ? GO:0000027 ... Q02326 21109664
    171869 4v7r:DG (4.0) BS01 rna ? GO:0000463 ... P05737 21109664
    171870 4v7r:DH (4.0) BS01 rna ? GO:0000470 ... P17076 21109664
    171871 4v7r:DI (4.0) BS01 rna ? GO:0002181 ... P05738 21109664
    171872 4v7r:DJ (4.0) BS01 rna ? GO:0000027 ... P41805 21109664
    171873 4v7r:DJ (4.0) BS02 rna ? GO:0000027 ... P41805 21109664
    171874 4v7r:DK (4.0) BS01 rna ? GO:0000027 ... P0C0W9 21109664
    171875 4v7r:DK (4.0) BS02 rna ? GO:0000027 ... P0C0W9 21109664
    171876 4v7r:DL (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171877 4v7r:DM (4.0) BS01 rna ? GO:0000027 ... P05317 21109664
    171878 4v7r:DN (4.0) BS01 rna ? GO:0000027 ... P36105 21109664
    171879 4v7r:DO (4.0) BS01 rna ? GO:0002181 ... P05748 21109664
    171880 4v7r:DO (4.0) BS02 rna ? GO:0002181 ... P05748 21109664
    171881 4v7r:DP (4.0) BS01 rna ? GO:0000470 ... P26784 21109664
    171882 4v7r:DQ (4.0) BS01 rna ? GO:0000448 ... P05740 21109664
    171883 4v7r:DQ (4.0) BS02 rna ? GO:0000448 ... P05740 21109664
    171884 4v7r:DR (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171885 4v7r:DS (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    171886 4v7r:DS (4.0) BS02 rna N/A GO:0003723 ... N/A 21109664
    171887 4v7r:DT (4.0) BS01 rna ? GO:0002181 ... Q02753 21109664
    171888 4v7r:DT (4.0) BS02 OHX ? GO:0002181 ... Q02753 21109664
    171889 4v7r:DU (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171890 4v7r:DV (4.0) BS01 rna ? GO:0002181 ... P04449 21109664
    171891 4v7r:DW (4.0) BS01 rna ? GO:0000027 ... P04456 21109664
    171892 4v7r:DW (4.0) BS02 rna ? GO:0000027 ... P04456 21109664
    171893 4v7r:DX (4.0) BS01 rna ? GO:0002181 ... P05743 21109664
    171894 4v7r:DX (4.0) BS02 rna ? GO:0002181 ... P05743 21109664
    171895 4v7r:DY (4.0) BS01 rna ? GO:0002181 ... P02406 21109664
    171896 4v7r:DY (4.0) BS02 OHX ? GO:0002181 ... P02406 21109664
    171897 4v7r:DZ (4.0) BS01 rna ? GO:0002181 ... P14120 21109664
    171898 4v7r:Da (4.0) BS01 rna ? GO:0002181 ... P0C2H8 21109664
    171899 4v7r:Db (4.0) BS01 rna ? GO:0002181 ... P38061 21109664
    171900 4v7r:Dc (4.0) BS01 rna N/A GO:0000463 ... N/A 21109664
    171901 4v7r:Dc (4.0) BS02 rna N/A GO:0000463 ... N/A 21109664
    171902 4v7r:Dd (4.0) BS01 rna ? GO:0000448 ... P49166 21109664
    171903 4v7r:Dd (4.0) BS02 rna ? GO:0000448 ... P49166 21109664
    171904 4v7r:Dd (4.0) BS03 OHX ? GO:0000448 ... P49166 21109664
    171905 4v7r:Dd (4.0) BS04 OHX ? GO:0000448 ... P49166 21109664
    171906 4v7r:De (4.0) BS01 rna ? GO:0002181 ... P04650 21109664
    171907 4v7r:De (4.0) BS02 rna ? GO:0002181 ... P04650 21109664
    171908 4v7r:Df (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171909 4v7r:Dg (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171910 4v7r:Dg (4.0) BS02 OHX N/A GO:0003735 ... N/A 21109664
    171911 4v7s:AB (3.2547) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    171912 4v7s:AD (3.2547) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    171913 4v7s:AE (3.2547) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    171914 4v7s:AF (3.2547) BS01 rna ? GO:0003735 ... P02358 20876128
    171915 4v7s:AG (3.2547) BS01 rna ? GO:0003723 ... P02359 20876128
    171916 4v7s:AH (3.2547) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    171917 4v7s:AI (3.2547) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    171918 4v7s:AJ (3.2547) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    171919 4v7s:AK (3.2547) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    171920 4v7s:AK (3.2547) BS02 rna ? GO:0002181 ... P0A7R9 20876128
    171921 4v7s:AL (3.2547) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    171922 4v7s:AM (3.2547) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    171923 4v7s:AN (3.2547) BS01 rna ? GO:0000028 ... P0AG59 20876128
    171924 4v7s:AO (3.2547) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    171925 4v7s:AO (3.2547) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    171926 4v7s:AP (3.2547) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    171927 4v7s:AQ (3.2547) BS01 rna ? GO:0000028 ... P0AG63 20876128
    171928 4v7s:AR (3.2547) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    171929 4v7s:AS (3.2547) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    171930 4v7s:AT (3.2547) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    171931 4v7s:AU (3.2547) BS01 rna ? GO:0003735 ... P68679 20876128
    171932 4v7s:B0 (3.2547) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    171933 4v7s:B1 (3.2547) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    171934 4v7s:B2 (3.2547) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    171935 4v7s:B3 (3.2547) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    171936 4v7s:B4 (3.2547) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    171937 4v7s:B4 (3.2547) BS02 ZN ? GO:0002181 ... P0A7Q6 20876128
    171938 4v7s:BC (3.2547) BS01 rna ? GO:0000027 ... P60422 20876128
    171939 4v7s:BD (3.2547) BS01 rna ? GO:0000027 ... P60438 20876128
    171940 4v7s:BE (3.2547) BS01 rna ? GO:0001070 ... P60723 20876128
    171941 4v7s:BF (3.2547) BS01 rna ? GO:0000027 ... P62399 20876128
    171942 4v7s:BF (3.2547) BS02 rna ? GO:0000027 ... P62399 20876128
    171943 4v7s:BG (3.2547) BS01 rna ? GO:0000027 ... P0AG55 20876128
    171944 4v7s:BH (3.2547) BS01 rna ? GO:0002181 ... P0A7R1 20876128
    171945 4v7s:BI (3.2547) BS01 rna ? GO:0000027 ... P0A7J7 20876128
    171946 4v7s:BJ (3.2547) BS01 rna ? GO:0002181 ... P0AA10 20876128
    171947 4v7s:BK (3.2547) BS01 rna ? GO:0002181 ... P0ADY3 20876128
    171948 4v7s:BK (3.2547) BS02 rna ? GO:0002181 ... P0ADY3 20876128
    171949 4v7s:BL (3.2547) BS01 rna ? GO:0002181 ... P02413 20876128
    171950 4v7s:BM (3.2547) BS01 rna ? GO:0000027 ... P0ADY7 20876128
    171951 4v7s:BM (3.2547) BS02 rna ? GO:0000027 ... P0ADY7 20876128
    171952 4v7s:BN (3.2547) BS01 rna ? GO:0000027 ... P0AG44 20876128
    171953 4v7s:BO (3.2547) BS01 rna ? GO:0002181 ... P0C018 20876128
    171954 4v7s:BO (3.2547) BS02 rna ? GO:0002181 ... P0C018 20876128
    171955 4v7s:BP (3.2547) BS01 rna ? GO:0000027 ... P0A7K6 20876128
    171956 4v7s:BP (3.2547) BS02 rna ? GO:0000027 ... P0A7K6 20876128
    171957 4v7s:BQ (3.2547) BS01 rna ? GO:0000027 ... P0A7L3 20876128
    171958 4v7s:BR (3.2547) BS01 rna ? GO:0002181 ... P0AG48 20876128
    171959 4v7s:BS (3.2547) BS01 rna ? GO:0002181 ... P61175 20876128
    171960 4v7s:BT (3.2547) BS01 rna ? GO:0000027 ... P0ADZ0 20876128
    171961 4v7s:BU (3.2547) BS01 rna ? GO:0000027 ... P60624 20876128
    171962 4v7s:BV (3.2547) BS01 rna ? GO:0000027 ... P68919 20876128
    171963 4v7s:BV (3.2547) BS02 rna ? GO:0000027 ... P68919 20876128
    171964 4v7s:BW (3.2547) BS01 rna ? GO:0000027 ... P0A7L8 20876128
    171965 4v7s:BX (3.2547) BS01 rna ? GO:0000027 ... P0A7M2 20876128
    171966 4v7s:BY (3.2547) BS01 rna ? GO:0000027 ... P0A7M6 20876128
    171967 4v7s:BZ (3.2547) BS01 rna ? GO:0000027 ... P0AG51 20876128
    171968 4v7s:BZ (3.2547) BS02 rna ? GO:0000027 ... P0AG51 20876128
    171969 4v7s:CB (3.2547) BS01 rna ? GO:0000028 ... P0A7V0 20876128
    171970 4v7s:CB (3.2547) BS02 rna ? GO:0000028 ... P0A7V0 20876128
    171971 4v7s:CD (3.2547) BS01 rna ? GO:0000028 ... P0A7V8 20876128
    171972 4v7s:CE (3.2547) BS01 rna ? GO:0000028 ... P0A7W1 20876128
    171973 4v7s:CF (3.2547) BS01 rna ? GO:0003735 ... P02358 20876128
    171974 4v7s:CG (3.2547) BS01 rna ? GO:0003723 ... P02359 20876128
    171975 4v7s:CH (3.2547) BS01 rna ? GO:0000028 ... P0A7W7 20876128
    171976 4v7s:CI (3.2547) BS01 rna ? GO:0000049 ... P0A7X3 20876128
    171977 4v7s:CJ (3.2547) BS01 rna ? GO:0000049 ... P0A7R5 20876128
    171978 4v7s:CK (3.2547) BS01 rna ? GO:0002181 ... P0A7R9 20876128
    171979 4v7s:CL (3.2547) BS01 rna ? GO:0000049 ... P0A7S3 20876128
    171980 4v7s:CM (3.2547) BS01 rna ? GO:0000049 ... P0A7S9 20876128
    171981 4v7s:CN (3.2547) BS01 rna ? GO:0000028 ... P0AG59 20876128
    171982 4v7s:CO (3.2547) BS01 rna ? GO:0000028 ... P0ADZ4 20876128
    171983 4v7s:CO (3.2547) BS02 rna ? GO:0000028 ... P0ADZ4 20876128
    171984 4v7s:CP (3.2547) BS01 rna ? GO:0000028 ... P0A7T3 20876128
    171985 4v7s:CQ (3.2547) BS01 rna ? GO:0000028 ... P0AG63 20876128
    171986 4v7s:CR (3.2547) BS01 rna ? GO:0003735 ... P0A7T7 20876128
    171987 4v7s:CS (3.2547) BS01 rna ? GO:0003723 ... P0A7U3 20876128
    171988 4v7s:CT (3.2547) BS01 rna ? GO:0000028 ... P0A7U7 20876128
    171989 4v7s:CU (3.2547) BS01 rna ? GO:0003735 ... P68679 20876128
    171990 4v7s:D0 (3.2547) BS01 rna ? GO:0000027 ... P0A7N4 20876128
    171991 4v7s:D1 (3.2547) BS01 rna ? GO:0000027 ... P0A7N9 20876128
    171992 4v7s:D2 (3.2547) BS01 rna ? GO:0002181 ... P0A7P5 20876128
    171993 4v7s:D3 (3.2547) BS01 rna ? GO:0002181 ... P0A7Q1 20876128
    171994 4v7s:D4 (3.2547) BS01 rna ? GO:0002181 ... P0A7Q6 20876128
    171995 4v7s:DC (3.2547) BS01 rna ? GO:0000027 ... P60422 20876128
    171996 4v7s:DD (3.2547) BS01 rna ? GO:0000027 ... P60438 20876128
    171997 4v7s:DE (3.2547) BS01 rna ? GO:0001070 ... P60723 20876128
    171998 4v7s:DF (3.2547) BS01 rna ? GO:0000027 ... P62399 20876128
    171999 4v7s:DF (3.2547) BS02 rna ? GO:0000027 ... P62399 20876128
    172000 4v7s:DG (3.2547) BS01 rna ? GO:0000027 ... P0AG55 20876128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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