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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171601 4v7m:D3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    171602 4v7m:D3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    171603 4v7m:D4 (3.45) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    171604 4v7m:D5 (3.45) BS01 rna ? GO:0003735 ... P80339 20154709
    171605 4v7m:D5 (3.45) BS02 ZN ? GO:0003735 ... P80339 20154709
    171606 4v7m:D6 (3.45) BS01 rna ? GO:0000049 ... P35871 20154709
    171607 4v7m:D7 (3.45) BS01 rna ? GO:0003735 ... P80340 20154709
    171608 4v7m:D8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    171609 4v7m:D9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    171610 4v7m:D9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    171611 4v7m:DC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    171612 4v7m:DD (3.45) BS01 rna ? GO:0002181 ... P60405 20154709
    171613 4v7m:DD (3.45) BS02 MG ? GO:0002181 ... P60405 20154709
    171614 4v7m:DD (3.45) BS03 MG ? GO:0002181 ... P60405 20154709
    171615 4v7m:DE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    171616 4v7m:DF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    171617 4v7m:DF (3.45) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    171618 4v7m:DG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    171619 4v7m:DG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    171620 4v7m:DG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    171621 4v7m:DH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171622 4v7m:DI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    171623 4v7m:DN (3.45) BS01 rna ? GO:0003729 ... P60488 20154709
    171624 4v7m:DO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    171625 4v7m:DO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    171626 4v7m:DO (3.45) BS03 MG ? GO:0003735 ... Q5SHP8 20154709
    171627 4v7m:DP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    171628 4v7m:DQ (3.45) BS01 rna ? GO:0000049 ... P60489 20154709
    171629 4v7m:DQ (3.45) BS02 rna ? GO:0000049 ... P60489 20154709
    171630 4v7m:DQ (3.45) BS03 rna ? GO:0000049 ... P60489 20154709
    171631 4v7m:DR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    171632 4v7m:DS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    171633 4v7m:DS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    171634 4v7m:DT (3.45) BS01 rna ? GO:0003735 ... P60490 20154709
    171635 4v7m:DT (3.45) BS02 rna ? GO:0003735 ... P60490 20154709
    171636 4v7m:DU (3.45) BS01 rna ? GO:0000027 ... P60491 20154709
    171637 4v7m:DV (3.45) BS01 rna ? GO:0003723 ... P60492 20154709
    171638 4v7m:DW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    171639 4v7m:DX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 20154709
    171640 4v7m:DY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    171641 4v7m:DZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    171642 4v7m:DZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    171643 4v7p:AB (3.62) BS01 rna ? GO:0003735 ... P62662 20588254
    171644 4v7p:AD (3.62) BS01 rna ? GO:0003723 ... P62664 20588254
    171645 4v7p:AE (3.62) BS01 rna ? GO:0003723 ... P62665 20588254
    171646 4v7p:AF (3.62) BS01 rna ? GO:0003735 ... P62666 20588254
    171647 4v7p:AG (3.62) BS01 rna ? GO:0000028 ... P62667 20588254
    171648 4v7p:AH (3.62) BS01 rna ? GO:0003735 ... P62668 20588254
    171649 4v7p:AI (3.62) BS01 rna ? GO:0000049 ... P62669 20588254
    171650 4v7p:AI (3.62) BS02 rna ? GO:0000049 ... P62669 20588254
    171651 4v7p:AJ (3.62) BS01 rna ? GO:0000049 ... P62653 20588254
    171652 4v7p:AK (3.62) BS01 rna ? GO:0003735 ... P62654 20588254
    171653 4v7p:AL (3.62) BS01 rna ? GO:0000049 ... P61941 20588254
    171654 4v7p:AM (3.62) BS01 rna ? GO:0000049 ... P62655 20588254
    171655 4v7p:AN (3.62) BS01 rna ? GO:0003735 ... P62656 20588254
    171656 4v7p:AN (3.62) BS02 ZN ? GO:0003735 ... P62656 20588254
    171657 4v7p:AO (3.62) BS01 rna ? GO:0003735 ... P62657 20588254
    171658 4v7p:AO (3.62) BS02 rna ? GO:0003735 ... P62657 20588254
    171659 4v7p:AP (3.62) BS01 rna ? GO:0003735 ... P62238 20588254
    171660 4v7p:AQ (3.62) BS01 rna ? GO:0003735 ... P62658 20588254
    171661 4v7p:AR (3.62) BS01 rna ? GO:0003735 ... P62659 20588254
    171662 4v7p:AS (3.62) BS01 rna ? GO:0003723 ... P62660 20588254
    171663 4v7p:AT (3.62) BS01 rna ? GO:0003723 ... P62661 20588254
    171664 4v7p:AV (3.62) BS01 rna ? GO:0003747 ... Q72HB8 20588254
    171665 4v7p:AV (3.62) BS02 rna ? GO:0003747 ... Q72HB8 20588254
    171666 4v7p:AV (3.62) BS03 rna ? GO:0003747 ... Q72HB8 20588254
    171667 4v7p:AV (3.62) BS04 rna ? GO:0003747 ... Q72HB8 20588254
    171668 4v7p:B2 (3.62) BS01 rna ? GO:0003735 ... P62652 20588254
    171669 4v7p:B3 (3.62) BS01 rna ? GO:0003735 ... Q72GW3 20588254
    171670 4v7p:B4 (3.62) BS01 rna ? GO:0003735 ... P80340 20588254
    171671 4v7p:B5 (3.62) BS01 rna ? GO:0003735 ... Q72L77 20588254
    171672 4v7p:BC (3.62) BS01 rna ? GO:0002181 ... Q72I07 20588254
    171673 4v7p:BC (3.62) BS02 rna ? GO:0002181 ... Q72I07 20588254
    171674 4v7p:BD (3.62) BS01 rna ? GO:0003735 ... Q72I04 20588254
    171675 4v7p:BE (3.62) BS01 rna ? GO:0003735 ... Q72I05 20588254
    171676 4v7p:BF (3.62) BS01 rna ? GO:0000049 ... Q72I16 20588254
    171677 4v7p:BF (3.62) BS02 rna ? GO:0000049 ... Q72I16 20588254
    171678 4v7p:BF (3.62) BS03 rna ? GO:0000049 ... Q72I16 20588254
    171679 4v7p:BG (3.62) BS01 rna ? GO:0002181 ... Q72I19 20588254
    171680 4v7p:BH (3.62) BS01 rna ? GO:0003735 ... Q72GV5 20588254
    171681 4v7p:BI (3.62) BS01 rna ? GO:0003735 ... Q72GS1 20588254
    171682 4v7p:BJ (3.62) BS01 rna ? GO:0003729 ... Q72IN1 20588254
    171683 4v7p:BK (3.62) BS01 rna ? GO:0003735 ... Q72I14 20588254
    171684 4v7p:BK (3.62) BS02 rna ? GO:0003735 ... Q72I14 20588254
    171685 4v7p:BL (3.62) BS01 rna ? GO:0003735 ... Q72I23 20588254
    171686 4v7p:BM (3.62) BS01 rna ? GO:0000049 ... Q72I11 20588254
    171687 4v7p:BM (3.62) BS02 rna ? GO:0000049 ... Q72I11 20588254
    171688 4v7p:BN (3.62) BS01 rna ? GO:0003735 ... Q72I33 20588254
    171689 4v7p:BO (3.62) BS01 rna ? GO:0003735 ... Q72I20 20588254
    171690 4v7p:BO (3.62) BS02 rna ? GO:0003735 ... Q72I20 20588254
    171691 4v7p:BP (3.62) BS01 rna ? GO:0003735 ... Q72JU9 20588254
    171692 4v7p:BP (3.62) BS02 rna ? GO:0003735 ... Q72JU9 20588254
    171693 4v7p:BQ (3.62) BS01 rna ? GO:0000027 ... Q72L76 20588254
    171694 4v7p:BR (3.62) BS01 rna ? GO:0003723 ... Q72HR2 20588254
    171695 4v7p:BS (3.62) BS01 rna ? GO:0003735 ... Q72I09 20588254
    171696 4v7p:BT (3.62) BS01 rna ? GO:0000027 ... Q72I06 20588254
    171697 4v7p:BU (3.62) BS01 rna ? GO:0003723 ... Q72I15 20588254
    171698 4v7p:BV (3.62) BS01 rna ? GO:0003723 ... Q72IA7 20588254
    171699 4v7p:BV (3.62) BS02 rna ? GO:0003723 ... Q72IA7 20588254
    171700 4v7p:BW (3.62) BS01 rna ? GO:0003735 ... Q72HR3 20588254
    171701 4v7p:BW (3.62) BS02 rna ? GO:0003735 ... Q72HR3 20588254
    171702 4v7p:BX (3.62) BS01 rna ? GO:0003735 ... Q72G84 20588254
    171703 4v7p:BY (3.62) BS01 rna ? GO:0003735 ... Q72I12 20588254
    171704 4v7p:BZ (3.62) BS01 rna ? GO:0003735 ... Q72I22 20588254
    171705 4v7p:C2 (3.62) BS01 rna ? GO:0003735 ... P62652 20588254
    171706 4v7p:C3 (3.62) BS01 rna ? GO:0003735 ... Q72GW3 20588254
    171707 4v7p:C4 (3.62) BS01 rna ? GO:0003735 ... P80340 20588254
    171708 4v7p:C5 (3.62) BS01 rna ? GO:0003735 ... Q72L77 20588254
    171709 4v7p:CC (3.62) BS01 rna ? GO:0002181 ... Q72I07 20588254
    171710 4v7p:CD (3.62) BS01 rna ? GO:0003735 ... Q72I04 20588254
    171711 4v7p:CE (3.62) BS01 rna ? GO:0003735 ... Q72I05 20588254
    171712 4v7p:CF (3.62) BS01 rna ? GO:0000049 ... Q72I16 20588254
    171713 4v7p:CF (3.62) BS02 rna ? GO:0000049 ... Q72I16 20588254
    171714 4v7p:CF (3.62) BS03 rna ? GO:0000049 ... Q72I16 20588254
    171715 4v7p:CG (3.62) BS01 rna ? GO:0002181 ... Q72I19 20588254
    171716 4v7p:CH (3.62) BS01 rna ? GO:0003735 ... Q72GV5 20588254
    171717 4v7p:CI (3.62) BS01 rna ? GO:0003735 ... Q72GS1 20588254
    171718 4v7p:CJ (3.62) BS01 rna ? GO:0003729 ... Q72IN1 20588254
    171719 4v7p:CK (3.62) BS01 rna ? GO:0003735 ... Q72I14 20588254
    171720 4v7p:CK (3.62) BS02 rna ? GO:0003735 ... Q72I14 20588254
    171721 4v7p:CL (3.62) BS01 rna ? GO:0003735 ... Q72I23 20588254
    171722 4v7p:CM (3.62) BS01 rna ? GO:0000049 ... Q72I11 20588254
    171723 4v7p:CM (3.62) BS02 rna ? GO:0000049 ... Q72I11 20588254
    171724 4v7p:CM (3.62) BS03 MG ? GO:0000049 ... Q72I11 20588254
    171725 4v7p:CN (3.62) BS01 rna ? GO:0003735 ... Q72I33 20588254
    171726 4v7p:CO (3.62) BS01 rna ? GO:0003735 ... Q72I20 20588254
    171727 4v7p:CO (3.62) BS02 rna ? GO:0003735 ... Q72I20 20588254
    171728 4v7p:CP (3.62) BS01 rna ? GO:0003735 ... Q72JU9 20588254
    171729 4v7p:CP (3.62) BS02 rna ? GO:0003735 ... Q72JU9 20588254
    171730 4v7p:CQ (3.62) BS01 rna ? GO:0000027 ... Q72L76 20588254
    171731 4v7p:CR (3.62) BS01 rna ? GO:0003723 ... Q72HR2 20588254
    171732 4v7p:CS (3.62) BS01 rna ? GO:0003735 ... Q72I09 20588254
    171733 4v7p:CT (3.62) BS01 rna ? GO:0000027 ... Q72I06 20588254
    171734 4v7p:CU (3.62) BS01 rna ? GO:0003723 ... Q72I15 20588254
    171735 4v7p:CV (3.62) BS01 rna ? GO:0003723 ... Q72IA7 20588254
    171736 4v7p:CV (3.62) BS02 rna ? GO:0003723 ... Q72IA7 20588254
    171737 4v7p:CW (3.62) BS01 rna ? GO:0003735 ... Q72HR3 20588254
    171738 4v7p:CW (3.62) BS02 rna ? GO:0003735 ... Q72HR3 20588254
    171739 4v7p:CX (3.62) BS01 rna ? GO:0003735 ... Q72G84 20588254
    171740 4v7p:CY (3.62) BS01 rna ? GO:0003735 ... Q72I12 20588254
    171741 4v7p:CZ (3.62) BS01 rna ? GO:0003735 ... Q72I22 20588254
    171742 4v7p:DB (3.62) BS01 rna ? GO:0003735 ... P62662 20588254
    171743 4v7p:DD (3.62) BS01 rna ? GO:0003723 ... P62664 20588254
    171744 4v7p:DD (3.62) BS02 ZN ? GO:0003723 ... P62664 20588254
    171745 4v7p:DE (3.62) BS01 rna ? GO:0003723 ... P62665 20588254
    171746 4v7p:DF (3.62) BS01 rna ? GO:0003735 ... P62666 20588254
    171747 4v7p:DG (3.62) BS01 rna ? GO:0000028 ... P62667 20588254
    171748 4v7p:DH (3.62) BS01 rna ? GO:0003735 ... P62668 20588254
    171749 4v7p:DI (3.62) BS01 rna ? GO:0000049 ... P62669 20588254
    171750 4v7p:DI (3.62) BS02 rna ? GO:0000049 ... P62669 20588254
    171751 4v7p:DJ (3.62) BS01 rna ? GO:0000049 ... P62653 20588254
    171752 4v7p:DK (3.62) BS01 rna ? GO:0003735 ... P62654 20588254
    171753 4v7p:DL (3.62) BS01 rna ? GO:0000049 ... P61941 20588254
    171754 4v7p:DM (3.62) BS01 rna ? GO:0000049 ... P62655 20588254
    171755 4v7p:DN (3.62) BS01 rna ? GO:0003735 ... P62656 20588254
    171756 4v7p:DN (3.62) BS02 ZN ? GO:0003735 ... P62656 20588254
    171757 4v7p:DO (3.62) BS01 rna ? GO:0003735 ... P62657 20588254
    171758 4v7p:DO (3.62) BS02 rna ? GO:0003735 ... P62657 20588254
    171759 4v7p:DP (3.62) BS01 rna ? GO:0003735 ... P62238 20588254
    171760 4v7p:DQ (3.62) BS01 rna ? GO:0003735 ... P62658 20588254
    171761 4v7p:DR (3.62) BS01 rna ? GO:0003735 ... P62659 20588254
    171762 4v7p:DS (3.62) BS01 rna ? GO:0003723 ... P62660 20588254
    171763 4v7p:DT (3.62) BS01 rna ? GO:0003723 ... P62661 20588254
    171764 4v7p:DV (3.62) BS01 rna ? GO:0003747 ... Q72HB8 20588254
    171765 4v7p:DV (3.62) BS02 rna ? GO:0003747 ... Q72HB8 20588254
    171766 4v7p:DV (3.62) BS03 rna ? GO:0003747 ... Q72HB8 20588254
    171767 4v7p:DV (3.62) BS04 rna ? GO:0003747 ... Q72HB8 20588254
    171768 4v7r:AB (4.0) BS01 rna ? GO:0000054 ... P25443 21109664
    171769 4v7r:AC (4.0) BS01 rna ? GO:0000054 ... P05750 21109664
    171770 4v7r:AD (4.0) BS01 rna ? GO:0000028 ... P26783 21109664
    171771 4v7r:AE (4.0) BS01 rna ? GO:0000462 ... O13516 21109664
    171772 4v7r:AF (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171773 4v7r:AG (4.0) BS01 rna ? GO:0000462 ... P05756 21109664
    171774 4v7r:AH (4.0) BS01 rna ? GO:0000028 ... P06367 21109664
    171775 4v7r:AI (4.0) BS01 rna ? GO:0000028 ... Q01855 21109664
    171776 4v7r:AJ (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171777 4v7r:AL (4.0) BS01 rna N/A GO:0003676 ... N/A 21109664
    171778 4v7r:AM (4.0) BS01 rna ? GO:0000028 ... P07280 21109664
    171779 4v7r:AN (4.0) BS01 rna ? GO:0000462 ... P38701 21109664
    171780 4v7r:AN (4.0) BS02 OHX ? GO:0000462 ... P38701 21109664
    171781 4v7r:AO (4.0) BS01 rna ? GO:0002181 ... P0C0W1 21109664
    171782 4v7r:AP (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171783 4v7r:AR (4.0) BS01 rna ? GO:0000028 ... Q3E7X9 21109664
    171784 4v7r:AS (4.0) BS01 rna ? GO:0002181 ... P41057 21109664
    171785 4v7r:AS (4.0) BS02 OHX ? GO:0002181 ... P41057 21109664
    171786 4v7r:AT (4.0) BS01 rna ? GO:0001965 ... P38011 21109664
    171787 4v7r:AT (4.0) BS02 OHX ? GO:0001965 ... P38011 21109664
    171788 4v7r:BA (4.0) BS01 rna N/A GO:0003723 ... N/A 21109664
    171789 4v7r:BB (4.0) BS01 rna N/A GO:0003735 ... N/A 21109664
    171790 4v7r:BC (4.0) BS01 rna ? GO:0000027 ... P14126 21109664
    171791 4v7r:BC (4.0) BS02 OHX ? GO:0000027 ... P14126 21109664
    171792 4v7r:BC (4.0) BS03 OHX ? GO:0000027 ... P14126 21109664
    171793 4v7r:BD (4.0) BS01 rna ? GO:0002181 ... P10664 21109664
    171794 4v7r:BD (4.0) BS02 rna ? GO:0002181 ... P10664 21109664
    171795 4v7r:BE (4.0) BS01 rna ? GO:0000027 ... P26321 21109664
    171796 4v7r:BE (4.0) BS02 rna ? GO:0000027 ... P26321 21109664
    171797 4v7r:BF (4.0) BS01 rna ? GO:0000027 ... Q02326 21109664
    171798 4v7r:BG (4.0) BS01 rna ? GO:0000463 ... P05737 21109664
    171799 4v7r:BH (4.0) BS01 rna ? GO:0000470 ... P17076 21109664
    171800 4v7r:BI (4.0) BS01 rna ? GO:0002181 ... P05738 21109664
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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