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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171401 4v7l:B9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    171402 4v7l:B9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    171403 4v7l:BC (3.0) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    171404 4v7l:BD (3.0) BS01 rna ? GO:0002181 ... P60405 20154709
    171405 4v7l:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    171406 4v7l:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    171407 4v7l:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    171408 4v7l:BF (3.0) BS03 MG ? GO:0003735 ... Q5SHN9 20154709
    171409 4v7l:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    171410 4v7l:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    171411 4v7l:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    171412 4v7l:BH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171413 4v7l:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    171414 4v7l:BN (3.0) BS01 rna ? GO:0003729 ... P60488 20154709
    171415 4v7l:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    171416 4v7l:BO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    171417 4v7l:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    171418 4v7l:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 20154709
    171419 4v7l:BQ (3.0) BS02 MG ? GO:0000049 ... P60489 20154709
    171420 4v7l:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    171421 4v7l:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    171422 4v7l:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    171423 4v7l:BT (3.0) BS01 rna ? GO:0003735 ... P60490 20154709
    171424 4v7l:BT (3.0) BS02 rna ? GO:0003735 ... P60490 20154709
    171425 4v7l:BU (3.0) BS01 rna ? GO:0000027 ... P60491 20154709
    171426 4v7l:BV (3.0) BS01 rna ? GO:0003723 ... P60492 20154709
    171427 4v7l:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    171428 4v7l:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20154709
    171429 4v7l:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    171430 4v7l:BY (3.0) BS02 MG ? GO:0003723 ... Q5SHP9 20154709
    171431 4v7l:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    171432 4v7l:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    171433 4v7l:CB (3.0) BS01 rna ? GO:0003735 ... P80371 20154709
    171434 4v7l:CC (3.0) BS01 rna ? GO:0003676 ... P80372 20154709
    171435 4v7l:CD (3.0) BS01 rna ? GO:0003723 ... P80373 20154709
    171436 4v7l:CD (3.0) BS02 ZN ? GO:0003723 ... P80373 20154709
    171437 4v7l:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    171438 4v7l:CE (3.0) BS02 MG ? GO:0003723 ... Q5SHQ5 20154709
    171439 4v7l:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    171440 4v7l:CG (3.0) BS01 rna ? GO:0000028 ... P17291 20154709
    171441 4v7l:CG (3.0) BS02 rna ? GO:0000028 ... P17291 20154709
    171442 4v7l:CH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171443 4v7l:CI (3.0) BS01 rna ? GO:0000049 ... P80374 20154709
    171444 4v7l:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    171445 4v7l:CK (3.0) BS01 rna ? GO:0003735 ... P80376 20154709
    171446 4v7l:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    171447 4v7l:CM (3.0) BS01 rna ? GO:0000049 ... P80377 20154709
    171448 4v7l:CM (3.0) BS02 rna ? GO:0000049 ... P80377 20154709
    171449 4v7l:CN (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171450 4v7l:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    171451 4v7l:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    171452 4v7l:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    171453 4v7l:CQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171454 4v7l:CQ (3.0) BS02 MG N/A GO:0003735 ... N/A 20154709
    171455 4v7l:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    171456 4v7l:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    171457 4v7l:CT (3.0) BS01 rna ? GO:0003723 ... P80380 20154709
    171458 4v7l:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 20154709
    171459 4v7l:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 20154709
    171460 4v7l:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 20154709
    171461 4v7l:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    171462 4v7l:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    171463 4v7l:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    171464 4v7l:D4 (3.0) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    171465 4v7l:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 20154709
    171466 4v7l:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 20154709
    171467 4v7l:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 20154709
    171468 4v7l:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    171469 4v7l:D9 (3.0) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    171470 4v7l:D9 (3.0) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    171471 4v7l:DC (3.0) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    171472 4v7l:DD (3.0) BS01 rna ? GO:0002181 ... P60405 20154709
    171473 4v7l:DD (3.0) BS02 MG ? GO:0002181 ... P60405 20154709
    171474 4v7l:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    171475 4v7l:DE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 20154709
    171476 4v7l:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    171477 4v7l:DF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    171478 4v7l:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    171479 4v7l:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    171480 4v7l:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    171481 4v7l:DH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171482 4v7l:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    171483 4v7l:DN (3.0) BS01 rna ? GO:0003729 ... P60488 20154709
    171484 4v7l:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    171485 4v7l:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    171486 4v7l:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    171487 4v7l:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 20154709
    171488 4v7l:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 20154709
    171489 4v7l:DQ (3.0) BS03 rna ? GO:0000049 ... P60489 20154709
    171490 4v7l:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    171491 4v7l:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    171492 4v7l:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    171493 4v7l:DT (3.0) BS01 rna ? GO:0003735 ... P60490 20154709
    171494 4v7l:DT (3.0) BS02 rna ? GO:0003735 ... P60490 20154709
    171495 4v7l:DU (3.0) BS01 rna ? GO:0000027 ... P60491 20154709
    171496 4v7l:DV (3.0) BS01 rna ? GO:0003723 ... P60492 20154709
    171497 4v7l:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    171498 4v7l:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 20154709
    171499 4v7l:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    171500 4v7l:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    171501 4v7l:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    171502 4v7l:DZ (3.0) BS03 MG ? GO:0003723 ... Q5SHZ1 20154709
    171503 4v7m:AB (3.45) BS01 rna ? GO:0003735 ... P80371 20154709
    171504 4v7m:AC (3.45) BS01 rna ? GO:0003676 ... P80372 20154709
    171505 4v7m:AD (3.45) BS01 rna ? GO:0003723 ... P80373 20154709
    171506 4v7m:AD (3.45) BS02 ZN ? GO:0003723 ... P80373 20154709
    171507 4v7m:AE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    171508 4v7m:AF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    171509 4v7m:AG (3.45) BS01 rna ? GO:0000028 ... P17291 20154709
    171510 4v7m:AG (3.45) BS02 rna ? GO:0000028 ... P17291 20154709
    171511 4v7m:AH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171512 4v7m:AI (3.45) BS01 rna ? GO:0000049 ... P80374 20154709
    171513 4v7m:AJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    171514 4v7m:AK (3.45) BS01 rna ? GO:0003735 ... P80376 20154709
    171515 4v7m:AL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    171516 4v7m:AM (3.45) BS01 rna ? GO:0000049 ... P80377 20154709
    171517 4v7m:AM (3.45) BS02 rna ? GO:0000049 ... P80377 20154709
    171518 4v7m:AM (3.45) BS03 rna ? GO:0000049 ... P80377 20154709
    171519 4v7m:AN (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171520 4v7m:AO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    171521 4v7m:AO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    171522 4v7m:AP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    171523 4v7m:AQ (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171524 4v7m:AR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    171525 4v7m:AS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    171526 4v7m:AT (3.45) BS01 rna ? GO:0003723 ... P80380 20154709
    171527 4v7m:B0 (3.45) BS01 rna ? GO:0003735 ... P60493 20154709
    171528 4v7m:B0 (3.45) BS02 rna ? GO:0003735 ... P60493 20154709
    171529 4v7m:B0 (3.45) BS03 rna ? GO:0003735 ... P60493 20154709
    171530 4v7m:B1 (3.45) BS01 rna ? GO:0003735 ... P60494 20154709
    171531 4v7m:B2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    171532 4v7m:B3 (3.45) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    171533 4v7m:B3 (3.45) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    171534 4v7m:B4 (3.45) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    171535 4v7m:B5 (3.45) BS01 rna ? GO:0003735 ... P80339 20154709
    171536 4v7m:B5 (3.45) BS02 ZN ? GO:0003735 ... P80339 20154709
    171537 4v7m:B6 (3.45) BS01 rna ? GO:0000049 ... P35871 20154709
    171538 4v7m:B7 (3.45) BS01 rna ? GO:0003735 ... P80340 20154709
    171539 4v7m:B8 (3.45) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    171540 4v7m:B9 (3.45) BS01 rna ? GO:0003735 ... Q5SHR2 20154709
    171541 4v7m:B9 (3.45) BS02 ZN ? GO:0003735 ... Q5SHR2 20154709
    171542 4v7m:BC (3.45) BS01 rna ? GO:0000049 ... Q5SLP7 20154709
    171543 4v7m:BD (3.45) BS01 rna ? GO:0002181 ... P60405 20154709
    171544 4v7m:BD (3.45) BS02 MG ? GO:0002181 ... P60405 20154709
    171545 4v7m:BD (3.45) BS03 MG ? GO:0002181 ... P60405 20154709
    171546 4v7m:BE (3.45) BS01 rna ? GO:0003735 ... Q5SHN8 20154709
    171547 4v7m:BF (3.45) BS01 rna ? GO:0003735 ... Q5SHN9 20154709
    171548 4v7m:BF (3.45) BS02 MG ? GO:0003735 ... Q5SHN9 20154709
    171549 4v7m:BG (3.45) BS01 rna ? GO:0000049 ... Q5SHQ0 20154709
    171550 4v7m:BG (3.45) BS02 rna ? GO:0000049 ... Q5SHQ0 20154709
    171551 4v7m:BG (3.45) BS03 rna ? GO:0000049 ... Q5SHQ0 20154709
    171552 4v7m:BH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171553 4v7m:BI (3.45) BS01 rna ? GO:0003735 ... Q5SLQ1 20154709
    171554 4v7m:BI (3.45) BS02 rna ? GO:0003735 ... Q5SLQ1 20154709
    171555 4v7m:BN (3.45) BS01 rna ? GO:0003729 ... P60488 20154709
    171556 4v7m:BO (3.45) BS01 rna ? GO:0003735 ... Q5SHP8 20154709
    171557 4v7m:BO (3.45) BS02 rna ? GO:0003735 ... Q5SHP8 20154709
    171558 4v7m:BP (3.45) BS01 rna ? GO:0003735 ... Q5SHQ7 20154709
    171559 4v7m:BQ (3.45) BS01 rna ? GO:0000049 ... P60489 20154709
    171560 4v7m:BQ (3.45) BS02 rna ? GO:0000049 ... P60489 20154709
    171561 4v7m:BR (3.45) BS01 rna ? GO:0003735 ... Q9Z9H5 20154709
    171562 4v7m:BS (3.45) BS01 rna ? GO:0003735 ... Q5SHQ4 20154709
    171563 4v7m:BS (3.45) BS02 rna ? GO:0003735 ... Q5SHQ4 20154709
    171564 4v7m:BT (3.45) BS01 rna ? GO:0003735 ... P60490 20154709
    171565 4v7m:BT (3.45) BS02 rna ? GO:0003735 ... P60490 20154709
    171566 4v7m:BU (3.45) BS01 rna ? GO:0000027 ... P60491 20154709
    171567 4v7m:BU (3.45) BS02 MG ? GO:0000027 ... P60491 20154709
    171568 4v7m:BV (3.45) BS01 rna ? GO:0003723 ... P60492 20154709
    171569 4v7m:BW (3.45) BS01 rna ? GO:0003735 ... Q5SHP3 20154709
    171570 4v7m:BX (3.45) BS01 rna ? GO:0000027 ... Q5SHP0 20154709
    171571 4v7m:BY (3.45) BS01 rna ? GO:0003723 ... Q5SHP9 20154709
    171572 4v7m:BZ (3.45) BS01 rna ? GO:0003723 ... Q5SHZ1 20154709
    171573 4v7m:BZ (3.45) BS02 rna ? GO:0003723 ... Q5SHZ1 20154709
    171574 4v7m:CB (3.45) BS01 rna ? GO:0003735 ... P80371 20154709
    171575 4v7m:CC (3.45) BS01 rna ? GO:0003676 ... P80372 20154709
    171576 4v7m:CD (3.45) BS01 rna ? GO:0003723 ... P80373 20154709
    171577 4v7m:CE (3.45) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    171578 4v7m:CF (3.45) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    171579 4v7m:CG (3.45) BS01 rna ? GO:0000028 ... P17291 20154709
    171580 4v7m:CG (3.45) BS02 rna ? GO:0000028 ... P17291 20154709
    171581 4v7m:CH (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171582 4v7m:CI (3.45) BS01 rna ? GO:0000049 ... P80374 20154709
    171583 4v7m:CJ (3.45) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    171584 4v7m:CK (3.45) BS01 rna ? GO:0003735 ... P80376 20154709
    171585 4v7m:CK (3.45) BS02 MG ? GO:0003735 ... P80376 20154709
    171586 4v7m:CL (3.45) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    171587 4v7m:CM (3.45) BS01 rna ? GO:0000049 ... P80377 20154709
    171588 4v7m:CN (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171589 4v7m:CO (3.45) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    171590 4v7m:CO (3.45) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    171591 4v7m:CP (3.45) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    171592 4v7m:CQ (3.45) BS01 rna N/A GO:0003735 ... N/A 20154709
    171593 4v7m:CR (3.45) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    171594 4v7m:CS (3.45) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    171595 4v7m:CT (3.45) BS01 rna ? GO:0003723 ... P80380 20154709
    171596 4v7m:D0 (3.45) BS01 rna ? GO:0003735 ... P60493 20154709
    171597 4v7m:D0 (3.45) BS02 rna ? GO:0003735 ... P60493 20154709
    171598 4v7m:D0 (3.45) BS03 rna ? GO:0003735 ... P60493 20154709
    171599 4v7m:D1 (3.45) BS01 rna ? GO:0003735 ... P60494 20154709
    171600 4v7m:D2 (3.45) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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