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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171201 4v7j:Bg (3.3) BS01 rna ? GO:0000028 ... P17291 20005802
    171202 4v7j:Bg (3.3) BS02 rna ? GO:0000028 ... P17291 20005802
    171203 4v7j:Bh (3.3) BS01 rna ? GO:0003735 ... P0DOY9 20005802
    171204 4v7j:Bi (3.3) BS01 rna ? GO:0000049 ... P80374 20005802
    171205 4v7j:Bj (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    171206 4v7j:Bk (3.3) BS01 rna ? GO:0003735 ... P80376 20005802
    171207 4v7j:Bl (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    171208 4v7j:Bl (3.3) BS02 MG ? GO:0000049 ... Q5SHN3 20005802
    171209 4v7j:Bm (3.3) BS01 rna ? GO:0000049 ... P80377 20005802
    171210 4v7j:Bm (3.3) BS02 MG ? GO:0000049 ... P80377 20005802
    171211 4v7j:Bn (3.3) BS01 rna ? GO:0003735 ... P0DOY6 20005802
    171212 4v7j:Bn (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 20005802
    171213 4v7j:Bo (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    171214 4v7j:Bo (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    171215 4v7j:Bp (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    171216 4v7j:Bq (3.3) BS01 rna ? GO:0003735 ... P0DOY7 20005802
    171217 4v7j:Br (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    171218 4v7j:Bs (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    171219 4v7j:Bt (3.3) BS01 rna ? GO:0003723 ... P80380 20005802
    171220 4v7j:By (3.3) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171221 4v7j:By (3.3) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171222 4v7k:A0 (3.6) BS01 rna ? GO:0003735 ... P60493 20005802
    171223 4v7k:A0 (3.6) BS02 rna ? GO:0003735 ... P60493 20005802
    171224 4v7k:A1 (3.6) BS01 rna ? GO:0003735 ... P60494 20005802
    171225 4v7k:A2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    171226 4v7k:A3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    171227 4v7k:A4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    171228 4v7k:A5 (3.6) BS01 rna ? GO:0003735 ... P80339 20005802
    171229 4v7k:A6 (3.6) BS01 rna ? GO:0000049 ... P35871 20005802
    171230 4v7k:A7 (3.6) BS01 rna ? GO:0003735 ... P80340 20005802
    171231 4v7k:A8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    171232 4v7k:A9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    171233 4v7k:AC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    171234 4v7k:AD (3.6) BS01 rna ? GO:0002181 ... P60405 20005802
    171235 4v7k:AD (3.6) BS02 rna ? GO:0002181 ... P60405 20005802
    171236 4v7k:AE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    171237 4v7k:AF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    171238 4v7k:AF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 20005802
    171239 4v7k:AG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    171240 4v7k:AG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    171241 4v7k:AG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    171242 4v7k:AH (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171243 4v7k:AI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    171244 4v7k:AJ (3.6) BS01 rna ? GO:0003735 ... Q8VVE3 20005802
    171245 4v7k:AN (3.6) BS01 rna ? GO:0003729 ... P60488 20005802
    171246 4v7k:AO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    171247 4v7k:AO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    171248 4v7k:AP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    171249 4v7k:AQ (3.6) BS01 rna ? GO:0000049 ... P60489 20005802
    171250 4v7k:AQ (3.6) BS02 rna ? GO:0000049 ... P60489 20005802
    171251 4v7k:AR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    171252 4v7k:AS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    171253 4v7k:AS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    171254 4v7k:AT (3.6) BS01 rna ? GO:0003735 ... P60490 20005802
    171255 4v7k:AT (3.6) BS02 rna ? GO:0003735 ... P60490 20005802
    171256 4v7k:AU (3.6) BS01 rna ? GO:0000027 ... P60491 20005802
    171257 4v7k:AV (3.6) BS01 rna ? GO:0003723 ... P60492 20005802
    171258 4v7k:AW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    171259 4v7k:AX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 20005802
    171260 4v7k:AY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    171261 4v7k:AZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    171262 4v7k:AZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    171263 4v7k:Ab (3.6) BS01 rna ? GO:0003735 ... P80371 20005802
    171264 4v7k:Ac (3.6) BS01 rna ? GO:0003676 ... P80372 20005802
    171265 4v7k:Ad (3.6) BS01 rna ? GO:0003723 ... P80373 20005802
    171266 4v7k:Ae (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    171267 4v7k:Af (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    171268 4v7k:Ag (3.6) BS01 rna ? GO:0000028 ... P17291 20005802
    171269 4v7k:Ag (3.6) BS02 rna ? GO:0000028 ... P17291 20005802
    171270 4v7k:Ah (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171271 4v7k:Ai (3.6) BS01 rna ? GO:0000049 ... P80374 20005802
    171272 4v7k:Aj (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    171273 4v7k:Ak (3.6) BS01 rna ? GO:0003735 ... P80376 20005802
    171274 4v7k:Al (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    171275 4v7k:Am (3.6) BS01 rna ? GO:0000049 ... P80377 20005802
    171276 4v7k:An (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171277 4v7k:An (3.6) BS02 ZN N/A GO:0003735 ... N/A 20005802
    171278 4v7k:Ao (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    171279 4v7k:Ao (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    171280 4v7k:Ap (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    171281 4v7k:Aq (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171282 4v7k:Ar (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    171283 4v7k:As (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    171284 4v7k:At (3.6) BS01 rna ? GO:0003723 ... P80380 20005802
    171285 4v7k:Ay (3.6) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171286 4v7k:Ay (3.6) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171287 4v7k:Ay (3.6) BS03 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171288 4v7k:B0 (3.6) BS01 rna ? GO:0003735 ... P60493 20005802
    171289 4v7k:B0 (3.6) BS02 rna ? GO:0003735 ... P60493 20005802
    171290 4v7k:B1 (3.6) BS01 rna ? GO:0003735 ... P60494 20005802
    171291 4v7k:B2 (3.6) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    171292 4v7k:B3 (3.6) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    171293 4v7k:B3 (3.6) BS02 rna ? GO:0003735 ... Q5SHQ6 20005802
    171294 4v7k:B4 (3.6) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    171295 4v7k:B4 (3.6) BS02 ZN ? GO:0003735 ... Q5SJE1 20005802
    171296 4v7k:B5 (3.6) BS01 rna ? GO:0003735 ... P80339 20005802
    171297 4v7k:B6 (3.6) BS01 rna ? GO:0000049 ... P35871 20005802
    171298 4v7k:B7 (3.6) BS01 rna ? GO:0003735 ... P80340 20005802
    171299 4v7k:B8 (3.6) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    171300 4v7k:B9 (3.6) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    171301 4v7k:BC (3.6) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    171302 4v7k:BC (3.6) BS02 rna ? GO:0000049 ... Q5SLP7 20005802
    171303 4v7k:BD (3.6) BS01 rna ? GO:0002181 ... P60405 20005802
    171304 4v7k:BD (3.6) BS02 MG ? GO:0002181 ... P60405 20005802
    171305 4v7k:BE (3.6) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    171306 4v7k:BF (3.6) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    171307 4v7k:BF (3.6) BS02 MG ? GO:0003735 ... Q5SHN9 20005802
    171308 4v7k:BG (3.6) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    171309 4v7k:BG (3.6) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    171310 4v7k:BG (3.6) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    171311 4v7k:BH (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171312 4v7k:BI (3.6) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    171313 4v7k:BJ (3.6) BS01 rna ? GO:0003735 ... Q8VVE3 20005802
    171314 4v7k:BN (3.6) BS01 rna ? GO:0003729 ... P60488 20005802
    171315 4v7k:BO (3.6) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    171316 4v7k:BO (3.6) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    171317 4v7k:BP (3.6) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    171318 4v7k:BQ (3.6) BS01 rna ? GO:0000049 ... P60489 20005802
    171319 4v7k:BQ (3.6) BS02 rna ? GO:0000049 ... P60489 20005802
    171320 4v7k:BR (3.6) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    171321 4v7k:BR (3.6) BS02 MG ? GO:0003735 ... Q9Z9H5 20005802
    171322 4v7k:BS (3.6) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    171323 4v7k:BS (3.6) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    171324 4v7k:BT (3.6) BS01 rna ? GO:0003735 ... P60490 20005802
    171325 4v7k:BT (3.6) BS02 rna ? GO:0003735 ... P60490 20005802
    171326 4v7k:BU (3.6) BS01 rna ? GO:0000027 ... P60491 20005802
    171327 4v7k:BV (3.6) BS01 rna ? GO:0003723 ... P60492 20005802
    171328 4v7k:BW (3.6) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    171329 4v7k:BX (3.6) BS01 rna ? GO:0000027 ... Q5SHP0 20005802
    171330 4v7k:BY (3.6) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    171331 4v7k:BZ (3.6) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    171332 4v7k:BZ (3.6) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    171333 4v7k:Bb (3.6) BS01 rna ? GO:0003735 ... P80371 20005802
    171334 4v7k:Bc (3.6) BS01 rna ? GO:0003676 ... P80372 20005802
    171335 4v7k:Bd (3.6) BS01 rna ? GO:0003723 ... P80373 20005802
    171336 4v7k:Bd (3.6) BS02 ZN ? GO:0003723 ... P80373 20005802
    171337 4v7k:Be (3.6) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    171338 4v7k:Bf (3.6) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    171339 4v7k:Bg (3.6) BS01 rna ? GO:0000028 ... P17291 20005802
    171340 4v7k:Bg (3.6) BS02 rna ? GO:0000028 ... P17291 20005802
    171341 4v7k:Bh (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171342 4v7k:Bi (3.6) BS01 rna ? GO:0000049 ... P80374 20005802
    171343 4v7k:Bj (3.6) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    171344 4v7k:Bk (3.6) BS01 rna ? GO:0003735 ... P80376 20005802
    171345 4v7k:Bl (3.6) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    171346 4v7k:Bl (3.6) BS02 MG ? GO:0000049 ... Q5SHN3 20005802
    171347 4v7k:Bm (3.6) BS01 rna ? GO:0000049 ... P80377 20005802
    171348 4v7k:Bm (3.6) BS02 MG ? GO:0000049 ... P80377 20005802
    171349 4v7k:Bn (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171350 4v7k:Bn (3.6) BS02 ZN N/A GO:0003735 ... N/A 20005802
    171351 4v7k:Bo (3.6) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    171352 4v7k:Bo (3.6) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    171353 4v7k:Bp (3.6) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    171354 4v7k:Bq (3.6) BS01 rna N/A GO:0003735 ... N/A 20005802
    171355 4v7k:Br (3.6) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    171356 4v7k:Bs (3.6) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    171357 4v7k:Bt (3.6) BS01 rna ? GO:0003723 ... P80380 20005802
    171358 4v7k:By (3.6) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171359 4v7k:By (3.6) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171360 4v7k:By (3.6) BS03 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171361 4v7l:AB (3.0) BS01 rna ? GO:0003735 ... P80371 20154709
    171362 4v7l:AC (3.0) BS01 rna ? GO:0003676 ... P80372 20154709
    171363 4v7l:AD (3.0) BS01 rna ? GO:0003723 ... P80373 20154709
    171364 4v7l:AD (3.0) BS02 ZN ? GO:0003723 ... P80373 20154709
    171365 4v7l:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 20154709
    171366 4v7l:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 20154709
    171367 4v7l:AF (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 20154709
    171368 4v7l:AG (3.0) BS01 rna ? GO:0000028 ... P17291 20154709
    171369 4v7l:AG (3.0) BS02 rna ? GO:0000028 ... P17291 20154709
    171370 4v7l:AH (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171371 4v7l:AI (3.0) BS01 rna ? GO:0000049 ... P80374 20154709
    171372 4v7l:AI (3.0) BS02 rna ? GO:0000049 ... P80374 20154709
    171373 4v7l:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 20154709
    171374 4v7l:AK (3.0) BS01 rna ? GO:0003735 ... P80376 20154709
    171375 4v7l:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 20154709
    171376 4v7l:AL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 20154709
    171377 4v7l:AM (3.0) BS01 rna ? GO:0000049 ... P80377 20154709
    171378 4v7l:AM (3.0) BS02 rna ? GO:0000049 ... P80377 20154709
    171379 4v7l:AN (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171380 4v7l:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 20154709
    171381 4v7l:AO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 20154709
    171382 4v7l:AO (3.0) BS03 MG ? GO:0003735 ... Q5SJ76 20154709
    171383 4v7l:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 20154709
    171384 4v7l:AQ (3.0) BS01 rna N/A GO:0003735 ... N/A 20154709
    171385 4v7l:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 20154709
    171386 4v7l:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 20154709
    171387 4v7l:AT (3.0) BS01 rna ? GO:0003723 ... P80380 20154709
    171388 4v7l:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 20154709
    171389 4v7l:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 20154709
    171390 4v7l:B0 (3.0) BS03 rna ? GO:0003735 ... P60493 20154709
    171391 4v7l:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 20154709
    171392 4v7l:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 20154709
    171393 4v7l:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 20154709
    171394 4v7l:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 20154709
    171395 4v7l:B4 (3.0) BS01 ZN ? GO:0003735 ... Q5SJE1 20154709
    171396 4v7l:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 20154709
    171397 4v7l:B5 (3.0) BS02 ZN ? GO:0003735 ... P80339 20154709
    171398 4v7l:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 20154709
    171399 4v7l:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 20154709
    171400 4v7l:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 20154709
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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