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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    171001 4v7h:BO (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171002 4v7h:BP (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    171003 4v7h:BP (8.9) BS02 rna N/A GO:0003723 ... N/A 20004163
    171004 4v7h:BQ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171005 4v7h:BQ (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    171006 4v7h:BR (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171007 4v7h:BR (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    171008 4v7h:BT (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171009 4v7h:BT (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    171010 4v7h:BU (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    171011 4v7h:BU (8.9) BS02 rna N/A GO:0003723 ... N/A 20004163
    171012 4v7h:BV (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171013 4v7h:BW (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171014 4v7h:BX (8.9) BS01 rna N/A GO:0000463 ... N/A 20004163
    171015 4v7h:BX (8.9) BS02 rna N/A GO:0000463 ... N/A 20004163
    171016 4v7h:BY (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171017 4v7h:BY (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    171018 4v7h:BZ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171019 4v7h:BZ (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    171020 4v7i:A0 (9.6) BS01 rna ? GO:0000027 ... P0A7N4 19913480
    171021 4v7i:A1 (9.6) BS01 rna ? GO:0000027 ... P0A7N9 19913480
    171022 4v7i:A2 (9.6) BS01 rna ? GO:0002181 ... P0A7P5 19913480
    171023 4v7i:A3 (9.6) BS01 rna ? GO:0002181 ... P0A7Q1 19913480
    171024 4v7i:A4 (9.6) BS01 rna ? GO:0002181 ... P0A7Q6 19913480
    171025 4v7i:A5 (9.6) BS01 rna ? GO:0000027 ... P0A7L0 19913480
    171026 4v7i:A6 (9.6) BS01 rna ? GO:0000027 ... P60422 19913480
    171027 4v7i:A6 (9.6) BS02 rna ? GO:0000027 ... P60422 19913480
    171028 4v7i:AA (9.6) BS01 rna N/A GO:0015031 ... N/A 19913480
    171029 4v7i:AD (9.6) BS01 rna ? GO:0000027 ... P60438 19913480
    171030 4v7i:AE (9.6) BS01 rna ? GO:0001070 ... P60723 19913480
    171031 4v7i:AF (9.6) BS01 rna ? GO:0000027 ... P62399 19913480
    171032 4v7i:AF (9.6) BS02 rna ? GO:0000027 ... P62399 19913480
    171033 4v7i:AG (9.6) BS01 rna ? GO:0000027 ... P0AG55 19913480
    171034 4v7i:AH (9.6) BS01 rna ? GO:0002181 ... P0A7R1 19913480
    171035 4v7i:AI (9.6) BS01 rna ? GO:0000027 ... P0A7J7 19913480
    171036 4v7i:AJ (9.6) BS01 rna ? GO:0002181 ... P0AA10 19913480
    171037 4v7i:AK (9.6) BS01 rna ? GO:0002181 ... P0ADY3 19913480
    171038 4v7i:AK (9.6) BS02 rna ? GO:0002181 ... P0ADY3 19913480
    171039 4v7i:AL (9.6) BS01 rna ? GO:0002181 ... P02413 19913480
    171040 4v7i:AM (9.6) BS01 rna ? GO:0000027 ... P0ADY7 19913480
    171041 4v7i:AM (9.6) BS02 rna ? GO:0000027 ... P0ADY7 19913480
    171042 4v7i:AN (9.6) BS01 rna ? GO:0000027 ... P0AG44 19913480
    171043 4v7i:AO (9.6) BS01 rna ? GO:0002181 ... P0C018 19913480
    171044 4v7i:AO (9.6) BS02 rna ? GO:0002181 ... P0C018 19913480
    171045 4v7i:AP (9.6) BS01 rna ? GO:0000027 ... P0A7K6 19913480
    171046 4v7i:AP (9.6) BS02 rna ? GO:0000027 ... P0A7K6 19913480
    171047 4v7i:AQ (9.6) BS01 rna ? GO:0000027 ... P0A7L3 19913480
    171048 4v7i:AR (9.6) BS01 rna ? GO:0002181 ... P0AG48 19913480
    171049 4v7i:AS (9.6) BS01 rna ? GO:0002181 ... P61175 19913480
    171050 4v7i:AT (9.6) BS01 rna ? GO:0000027 ... P0ADZ0 19913480
    171051 4v7i:AU (9.6) BS01 rna ? GO:0000027 ... P60624 19913480
    171052 4v7i:AV (9.6) BS01 rna ? GO:0000027 ... P68919 19913480
    171053 4v7i:AV (9.6) BS02 rna ? GO:0000027 ... P68919 19913480
    171054 4v7i:AW (9.6) BS01 rna ? GO:0000027 ... P0A7L8 19913480
    171055 4v7i:AW (9.6) BS02 rna ? GO:0000027 ... P0A7L8 19913480
    171056 4v7i:AX (9.6) BS01 rna ? GO:0000027 ... P0A7M2 19913480
    171057 4v7i:AY (9.6) BS01 rna ? GO:0000027 ... P0A7M6 19913480
    171058 4v7i:AZ (9.6) BS01 rna ? GO:0000027 ... P0AG51 19913480
    171059 4v7i:AZ (9.6) BS02 rna ? GO:0000027 ... P0AG51 19913480
    171060 4v7i:BB (9.6) BS01 rna ? GO:0000028 ... P0A7V0 19913480
    171061 4v7i:BC (9.6) BS01 rna ? GO:0000028 ... P0A7V3 19913480
    171062 4v7i:BD (9.6) BS01 rna ? GO:0000028 ... P0A7V8 19913480
    171063 4v7i:BE (9.6) BS01 rna ? GO:0000028 ... P0A7W1 19913480
    171064 4v7i:BF (9.6) BS01 rna ? GO:0002181 ... P02358 19913480
    171065 4v7i:BG (9.6) BS01 rna ? GO:0000028 ... P02359 19913480
    171066 4v7i:BH (9.6) BS01 rna ? GO:0000028 ... P0A7W7 19913480
    171067 4v7i:BI (9.6) BS01 rna ? GO:0000049 ... P0A7X3 19913480
    171068 4v7i:BJ (9.6) BS01 rna ? GO:0000049 ... P0A7R5 19913480
    171069 4v7i:BK (9.6) BS01 rna ? GO:0002181 ... P0A7R9 19913480
    171070 4v7i:BL (9.6) BS01 rna ? GO:0000049 ... P0A7S3 19913480
    171071 4v7i:BM (9.6) BS01 rna ? GO:0000049 ... P0A7S9 19913480
    171072 4v7i:BM (9.6) BS02 rna ? GO:0000049 ... P0A7S9 19913480
    171073 4v7i:BN (9.6) BS01 rna ? GO:0000028 ... P0AG59 19913480
    171074 4v7i:BO (9.6) BS01 rna ? GO:0003735 ... Q8X9M2 19913480
    171075 4v7i:BO (9.6) BS02 rna ? GO:0003735 ... Q8X9M2 19913480
    171076 4v7i:BP (9.6) BS01 rna ? GO:0000028 ... P0A7T3 19913480
    171077 4v7i:BQ (9.6) BS01 rna ? GO:0000028 ... P0AG63 19913480
    171078 4v7i:BR (9.6) BS01 rna ? GO:0002181 ... P0A7T7 19913480
    171079 4v7i:BS (9.6) BS01 rna ? GO:0000028 ... P0A7U3 19913480
    171080 4v7i:BT (9.6) BS01 rna ? GO:0000028 ... P0A7U7 19913480
    171081 4v7i:BU (9.6) BS01 rna ? GO:0000028 ... P68679 19913480
    171082 4v7j:A0 (3.3) BS01 rna ? GO:0003735 ... P60493 20005802
    171083 4v7j:A0 (3.3) BS02 rna ? GO:0003735 ... P60493 20005802
    171084 4v7j:A1 (3.3) BS01 rna ? GO:0003735 ... P60494 20005802
    171085 4v7j:A2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    171086 4v7j:A3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    171087 4v7j:A3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 20005802
    171088 4v7j:A4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    171089 4v7j:A4 (3.3) BS02 ZN ? GO:0003735 ... Q5SJE1 20005802
    171090 4v7j:A5 (3.3) BS01 rna ? GO:0003735 ... P80339 20005802
    171091 4v7j:A6 (3.3) BS01 rna ? GO:0000049 ... P35871 20005802
    171092 4v7j:A7 (3.3) BS01 rna ? GO:0003735 ... P80340 20005802
    171093 4v7j:A8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    171094 4v7j:A9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    171095 4v7j:A9 (3.3) BS02 ZN ? GO:0003735 ... Q5SHR2 20005802
    171096 4v7j:AC (3.3) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    171097 4v7j:AC (3.3) BS02 rna ? GO:0000049 ... Q5SLP7 20005802
    171098 4v7j:AD (3.3) BS01 rna ? GO:0002181 ... P60405 20005802
    171099 4v7j:AD (3.3) BS02 MG ? GO:0002181 ... P60405 20005802
    171100 4v7j:AD (3.3) BS03 MG ? GO:0002181 ... P60405 20005802
    171101 4v7j:AE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    171102 4v7j:AF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    171103 4v7j:AG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    171104 4v7j:AG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    171105 4v7j:AG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    171106 4v7j:AH (3.3) BS01 rna ? GO:0002181 ... P0DOY8 20005802
    171107 4v7j:AI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    171108 4v7j:AJ (3.3) BS01 rna ? GO:0003735 ... Q8VVE3 20005802
    171109 4v7j:AN (3.3) BS01 rna ? GO:0003729 ... P60488 20005802
    171110 4v7j:AO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    171111 4v7j:AO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    171112 4v7j:AP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    171113 4v7j:AQ (3.3) BS01 rna ? GO:0000049 ... P60489 20005802
    171114 4v7j:AQ (3.3) BS02 rna ? GO:0000049 ... P60489 20005802
    171115 4v7j:AR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    171116 4v7j:AS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    171117 4v7j:AS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    171118 4v7j:AT (3.3) BS01 rna ? GO:0003735 ... P60490 20005802
    171119 4v7j:AT (3.3) BS02 rna ? GO:0003735 ... P60490 20005802
    171120 4v7j:AU (3.3) BS01 rna ? GO:0000027 ... P60491 20005802
    171121 4v7j:AV (3.3) BS01 rna ? GO:0003723 ... P60492 20005802
    171122 4v7j:AW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    171123 4v7j:AX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 20005802
    171124 4v7j:AY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    171125 4v7j:AZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    171126 4v7j:AZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    171127 4v7j:Ab (3.3) BS01 rna ? GO:0003735 ... P80371 20005802
    171128 4v7j:Ac (3.3) BS01 rna ? GO:0003676 ... P80372 20005802
    171129 4v7j:Ad (3.3) BS01 rna ? GO:0003723 ... P80373 20005802
    171130 4v7j:Ad (3.3) BS02 ZN ? GO:0003723 ... P80373 20005802
    171131 4v7j:Ae (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    171132 4v7j:Af (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    171133 4v7j:Ag (3.3) BS01 rna ? GO:0000028 ... P17291 20005802
    171134 4v7j:Ag (3.3) BS02 rna ? GO:0000028 ... P17291 20005802
    171135 4v7j:Ah (3.3) BS01 rna ? GO:0003735 ... P0DOY9 20005802
    171136 4v7j:Ai (3.3) BS01 rna ? GO:0000049 ... P80374 20005802
    171137 4v7j:Aj (3.3) BS01 rna ? GO:0000049 ... Q5SHN7 20005802
    171138 4v7j:Aj (3.3) BS02 rna ? GO:0000049 ... Q5SHN7 20005802
    171139 4v7j:Ak (3.3) BS01 rna ? GO:0003735 ... P80376 20005802
    171140 4v7j:Al (3.3) BS01 rna ? GO:0000049 ... Q5SHN3 20005802
    171141 4v7j:Am (3.3) BS01 rna ? GO:0000049 ... P80377 20005802
    171142 4v7j:An (3.3) BS01 rna ? GO:0003735 ... P0DOY6 20005802
    171143 4v7j:An (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 20005802
    171144 4v7j:Ao (3.3) BS01 rna ? GO:0003735 ... Q5SJ76 20005802
    171145 4v7j:Ao (3.3) BS02 rna ? GO:0003735 ... Q5SJ76 20005802
    171146 4v7j:Ap (3.3) BS01 rna ? GO:0003735 ... Q5SJH3 20005802
    171147 4v7j:Aq (3.3) BS01 rna ? GO:0003735 ... P0DOY7 20005802
    171148 4v7j:Ar (3.3) BS01 rna ? GO:0003735 ... Q5SLQ0 20005802
    171149 4v7j:As (3.3) BS01 rna ? GO:0000028 ... Q5SHP2 20005802
    171150 4v7j:At (3.3) BS01 rna ? GO:0003723 ... P80380 20005802
    171151 4v7j:Ay (3.3) BS01 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171152 4v7j:Ay (3.3) BS02 rna 3.1.-.- GO:0000976 ... P0C077 20005802
    171153 4v7j:B0 (3.3) BS01 rna ? GO:0003735 ... P60493 20005802
    171154 4v7j:B1 (3.3) BS01 rna ? GO:0003735 ... P60494 20005802
    171155 4v7j:B2 (3.3) BS01 rna ? GO:0003735 ... Q5SHP6 20005802
    171156 4v7j:B3 (3.3) BS01 rna ? GO:0003735 ... Q5SHQ6 20005802
    171157 4v7j:B3 (3.3) BS02 rna ? GO:0003735 ... Q5SHQ6 20005802
    171158 4v7j:B4 (3.3) BS01 rna ? GO:0003735 ... Q5SJE1 20005802
    171159 4v7j:B5 (3.3) BS01 rna ? GO:0003735 ... P80339 20005802
    171160 4v7j:B6 (3.3) BS01 rna ? GO:0000049 ... P35871 20005802
    171161 4v7j:B7 (3.3) BS01 rna ? GO:0003735 ... P80340 20005802
    171162 4v7j:B8 (3.3) BS01 rna ? GO:0003735 ... Q5SKU1 20005802
    171163 4v7j:B9 (3.3) BS01 rna ? GO:0003735 ... Q5SHR2 20005802
    171164 4v7j:B9 (3.3) BS02 ZN ? GO:0003735 ... Q5SHR2 20005802
    171165 4v7j:BC (3.3) BS01 rna ? GO:0000049 ... Q5SLP7 20005802
    171166 4v7j:BC (3.3) BS02 rna ? GO:0000049 ... Q5SLP7 20005802
    171167 4v7j:BD (3.3) BS01 rna ? GO:0002181 ... P60405 20005802
    171168 4v7j:BD (3.3) BS02 MG ? GO:0002181 ... P60405 20005802
    171169 4v7j:BE (3.3) BS01 rna ? GO:0003735 ... Q5SHN8 20005802
    171170 4v7j:BF (3.3) BS01 rna ? GO:0003735 ... Q5SHN9 20005802
    171171 4v7j:BF (3.3) BS02 MG ? GO:0003735 ... Q5SHN9 20005802
    171172 4v7j:BG (3.3) BS01 rna ? GO:0000049 ... Q5SHQ0 20005802
    171173 4v7j:BG (3.3) BS02 rna ? GO:0000049 ... Q5SHQ0 20005802
    171174 4v7j:BG (3.3) BS03 rna ? GO:0000049 ... Q5SHQ0 20005802
    171175 4v7j:BH (3.3) BS01 rna ? GO:0002181 ... P0DOY8 20005802
    171176 4v7j:BI (3.3) BS01 rna ? GO:0003735 ... Q5SLQ1 20005802
    171177 4v7j:BJ (3.3) BS01 rna ? GO:0003735 ... Q8VVE3 20005802
    171178 4v7j:BN (3.3) BS01 rna ? GO:0003729 ... P60488 20005802
    171179 4v7j:BO (3.3) BS01 rna ? GO:0003735 ... Q5SHP8 20005802
    171180 4v7j:BO (3.3) BS02 rna ? GO:0003735 ... Q5SHP8 20005802
    171181 4v7j:BP (3.3) BS01 rna ? GO:0003735 ... Q5SHQ7 20005802
    171182 4v7j:BQ (3.3) BS01 rna ? GO:0000049 ... P60489 20005802
    171183 4v7j:BR (3.3) BS01 rna ? GO:0003735 ... Q9Z9H5 20005802
    171184 4v7j:BS (3.3) BS01 rna ? GO:0003735 ... Q5SHQ4 20005802
    171185 4v7j:BS (3.3) BS02 rna ? GO:0003735 ... Q5SHQ4 20005802
    171186 4v7j:BT (3.3) BS01 rna ? GO:0003735 ... P60490 20005802
    171187 4v7j:BT (3.3) BS02 rna ? GO:0003735 ... P60490 20005802
    171188 4v7j:BU (3.3) BS01 rna ? GO:0000027 ... P60491 20005802
    171189 4v7j:BV (3.3) BS01 rna ? GO:0003723 ... P60492 20005802
    171190 4v7j:BW (3.3) BS01 rna ? GO:0003735 ... Q5SHP3 20005802
    171191 4v7j:BX (3.3) BS01 rna ? GO:0000027 ... Q5SHP0 20005802
    171192 4v7j:BY (3.3) BS01 rna ? GO:0003723 ... Q5SHP9 20005802
    171193 4v7j:BZ (3.3) BS01 rna ? GO:0003723 ... Q5SHZ1 20005802
    171194 4v7j:BZ (3.3) BS02 rna ? GO:0003723 ... Q5SHZ1 20005802
    171195 4v7j:Bb (3.3) BS01 rna ? GO:0003735 ... P80371 20005802
    171196 4v7j:Bc (3.3) BS01 rna ? GO:0003676 ... P80372 20005802
    171197 4v7j:Bd (3.3) BS01 rna ? GO:0003723 ... P80373 20005802
    171198 4v7j:Bd (3.3) BS02 ZN ? GO:0003723 ... P80373 20005802
    171199 4v7j:Be (3.3) BS01 rna ? GO:0003723 ... Q5SHQ5 20005802
    171200 4v7j:Bf (3.3) BS01 rna ? GO:0003735 ... Q5SLP8 20005802
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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