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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    170801 4v7d:AP (7.6) BS02 rna ? GO:0000027 ... P0ADY7 24324137
    170802 4v7d:AQ (7.6) BS01 rna ? GO:0000027 ... P0AG44 24324137
    170803 4v7d:AR (7.6) BS01 rna ? GO:0002181 ... P0C018 24324137
    170804 4v7d:AR (7.6) BS02 rna ? GO:0002181 ... P0C018 24324137
    170805 4v7d:AS (7.6) BS01 rna ? GO:0000027 ... P0A7K6 24324137
    170806 4v7d:AS (7.6) BS02 rna ? GO:0000027 ... P0A7K6 24324137
    170807 4v7d:AT (7.6) BS01 rna ? GO:0000027 ... P0A7L3 24324137
    170808 4v7d:AU (7.6) BS01 rna ? GO:0002181 ... P0AG48 24324137
    170809 4v7d:AV (7.6) BS01 rna ? GO:0002181 ... P61175 24324137
    170810 4v7d:AW (7.6) BS01 rna ? GO:0000027 ... P0ADZ0 24324137
    170811 4v7d:AX (7.6) BS01 rna ? GO:0000027 ... P60624 24324137
    170812 4v7d:AY (7.6) BS01 rna ? GO:0000027 ... P68919 24324137
    170813 4v7d:AY (7.6) BS02 rna ? GO:0000027 ... P68919 24324137
    170814 4v7d:AZ (7.6) BS01 rna ? GO:0000027 ... P0A7L8 24324137
    170815 4v7d:AZ (7.6) BS02 rna ? GO:0000027 ... P0A7L8 24324137
    170816 4v7d:BB (7.6) BS01 rna ? GO:0000028 ... P0A7V0 24324137
    170817 4v7d:BC (7.6) BS01 rna ? GO:0000028 ... P0A7V3 24324137
    170818 4v7d:BD (7.6) BS01 rna ? GO:0000028 ... P0A7V8 24324137
    170819 4v7d:BE (7.6) BS01 rna ? GO:0000028 ... P0A7W1 24324137
    170820 4v7d:BF (7.6) BS01 rna ? GO:0002181 ... P02358 24324137
    170821 4v7d:BG (7.6) BS01 rna ? GO:0000028 ... P02359 24324137
    170822 4v7d:BH (7.6) BS01 rna ? GO:0000028 ... P0A7W7 24324137
    170823 4v7d:BI (7.6) BS01 rna ? GO:0000049 ... P0A7X3 24324137
    170824 4v7d:BJ (7.6) BS01 rna ? GO:0000049 ... P0A7R5 24324137
    170825 4v7d:BK (7.6) BS01 rna ? GO:0002181 ... P0A7R9 24324137
    170826 4v7d:BL (7.6) BS01 rna ? GO:0000049 ... P0A7S3 24324137
    170827 4v7d:BM (7.6) BS01 rna ? GO:0000049 ... P0A7S9 24324137
    170828 4v7d:BN (7.6) BS01 rna ? GO:0000028 ... P0AG59 24324137
    170829 4v7d:BO (7.6) BS01 rna ? GO:0000028 ... P0ADZ4 24324137
    170830 4v7d:BO (7.6) BS02 rna ? GO:0000028 ... P0ADZ4 24324137
    170831 4v7d:BP (7.6) BS01 rna ? GO:0000028 ... P0A7T3 24324137
    170832 4v7d:BQ (7.6) BS01 rna ? GO:0000028 ... P0AG63 24324137
    170833 4v7d:BR (7.6) BS01 rna ? GO:0002181 ... P0A7T7 24324137
    170834 4v7d:BS (7.6) BS01 rna ? GO:0000028 ... P0A7U3 24324137
    170835 4v7d:BT (7.6) BS01 rna ? GO:0000028 ... P0A7U7 24324137
    170836 4v7d:BU (7.6) BS01 rna ? GO:0000028 ... P68679 24324137
    170837 4v7d:BZ (7.6) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 24324137
    170838 4v7d:BZ (7.6) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 24324137
    170839 4v7e:BA (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170840 4v7e:BB (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170841 4v7e:BB (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170842 4v7e:BC (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170843 4v7e:BD (5.5) BS01 rna ? GO:0003723 ... Q8L804 24499919
    170844 4v7e:BE (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170845 4v7e:BF (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170846 4v7e:BG (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170847 4v7e:BH (5.5) BS01 rna ? GO:0003735 ... Q5I7K2 24499919
    170848 4v7e:BI (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170849 4v7e:BJ (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170850 4v7e:BL (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170851 4v7e:BL (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170852 4v7e:BM (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170853 4v7e:BN (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170854 4v7e:BN (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170855 4v7e:BO (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170856 4v7e:BP (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170857 4v7e:BQ (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170858 4v7e:BR (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170859 4v7e:BS (5.5) BS01 rna ? GO:0003676 ... Q8L806 24499919
    170860 4v7e:BT (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170861 4v7e:BU (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170862 4v7e:BW (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170863 4v7e:BX (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170864 4v7e:BX (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170865 4v7e:BY (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170866 4v7e:Ba (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170867 4v7e:Bb (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170868 4v7e:Bc (5.5) BS01 rna ? GO:0003735 ... Q7X9K4 24499919
    170869 4v7e:Bd (5.5) BS01 rna ? GO:0002181 ... Q5I7K3 24499919
    170870 4v7e:Be (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170871 4v7e:Bf (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170872 4v7e:CA (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170873 4v7e:CA (5.5) BS02 rna N/A GO:0003723 ... N/A 24499919
    170874 4v7e:CB (5.5) BS01 rna ? GO:0003723 ... Q7X744 24499919
    170875 4v7e:CC (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170876 4v7e:CC (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170877 4v7e:CD (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170878 4v7e:CD (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170879 4v7e:CE (5.5) BS01 rna ? GO:0003735 ... Q5I7L4 24499919
    170880 4v7e:CF (5.5) BS01 rna ? GO:0000463 ... Q5I7K6 24499919
    170881 4v7e:CF (5.5) BS02 rna ? GO:0000463 ... Q5I7K6 24499919
    170882 4v7e:CG (5.5) BS01 rna N/A GO:0042254 ... N/A 24499919
    170883 4v7e:CG (5.5) BS02 rna N/A GO:0042254 ... N/A 24499919
    170884 4v7e:CH (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170885 4v7e:CI (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170886 4v7e:CJ (5.5) BS01 rna ? GO:0003723 ... Q5I7L2 24499919
    170887 4v7e:CJ (5.5) BS02 rna ? GO:0003723 ... Q5I7L2 24499919
    170888 4v7e:CK (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170889 4v7e:CL (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170890 4v7e:CM (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170891 4v7e:CN (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170892 4v7e:CO (5.5) BS01 rna ? GO:0003729 ... Q5I7L1 24499919
    170893 4v7e:CP (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170894 4v7e:CP (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170895 4v7e:CQ (5.5) BS01 rna ? GO:0003729 ... Q5I7L0 24499919
    170896 4v7e:CR (5.5) BS01 rna ? GO:0003723 ... Q7XY20 24499919
    170897 4v7e:CR (5.5) BS02 rna ? GO:0003723 ... Q7XY20 24499919
    170898 4v7e:CS (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170899 4v7e:CS (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170900 4v7e:CT (5.5) BS01 rna ? GO:0003735 ... F4YWL9 24499919
    170901 4v7e:CT (5.5) BS02 rna ? GO:0003735 ... F4YWL9 24499919
    170902 4v7e:CU (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170903 4v7e:CV (5.5) BS01 rna ? GO:0003735 ... Q5I7K4 24499919
    170904 4v7e:CV (5.5) BS02 rna ? GO:0003735 ... Q5I7K4 24499919
    170905 4v7e:CX (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170906 4v7e:CX (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170907 4v7e:CY (5.5) BS01 rna N/A GO:0003723 ... N/A 24499919
    170908 4v7e:CY (5.5) BS02 rna N/A GO:0003723 ... N/A 24499919
    170909 4v7e:CZ (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170910 4v7e:Ca (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170911 4v7e:Cb (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170912 4v7e:Cc (5.5) BS01 rna ? GO:0003723 ... Q5I7K9 24499919
    170913 4v7e:Cc (5.5) BS02 rna ? GO:0003723 ... Q5I7K9 24499919
    170914 4v7e:Cd (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170915 4v7e:Ce (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170916 4v7e:Cf (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170917 4v7e:Cg (5.5) BS01 rna ? GO:0003735 ... Q5I7K8 24499919
    170918 4v7e:Ch (5.5) BS01 rna ? GO:0000463 ... Q8L805 24499919
    170919 4v7e:Ch (5.5) BS02 rna ? GO:0000463 ... Q8L805 24499919
    170920 4v7e:Ci (5.5) BS01 rna ? GO:0002181 ... Q5I7L5 24499919
    170921 4v7e:Cj (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170922 4v7e:Cj (5.5) BS02 rna N/A GO:0003735 ... N/A 24499919
    170923 4v7e:Ck (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170924 4v7e:Cl (5.5) BS01 rna ? GO:0003735 ... Q5I7K7 24499919
    170925 4v7e:Cl (5.5) BS02 rna ? GO:0003735 ... Q5I7K7 24499919
    170926 4v7e:Cm (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170927 4v7e:Co (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170928 4v7e:Cp (5.5) BS01 rna ? GO:0003735 ... D8L9P6 24499919
    170929 4v7e:Cp (5.5) BS02 rna ? GO:0003735 ... D8L9P6 24499919
    170930 4v7e:Cr (5.5) BS01 rna N/A GO:0003735 ... N/A 24499919
    170931 4v7e:Cz (5.5) BS01 rna ? GO:0003723 ... Q5I7L3 24499919
    170932 4v7f:B (8.7) BS01 rna ? GO:0002181 ... P0CX45 24662372
    170933 4v7f:C (8.7) BS01 rna ? GO:0000027 ... P14126 24662372
    170934 4v7f:D (8.7) BS01 rna ? GO:0002181 ... P10664 24662372
    170935 4v7f:E (8.7) BS01 rna ? GO:0000027 ... P0C0W9 24662372
    170936 4v7f:E (8.7) BS02 rna ? GO:0000027 ... P0C0W9 24662372
    170937 4v7f:J (8.7) BS01 rna ? GO:0000470 ... P26784 24662372
    170938 4v7f:K (8.7) BS01 rna ? GO:0002181 ... Q12690 24662372
    170939 4v7f:L (8.7) BS01 rna ? GO:0002181 ... P0CX41 24662372
    170940 4v7f:N (8.7) BS01 rna ? GO:0002181 ... P02406 24662372
    170941 4v7f:O (8.7) BS01 rna ? GO:0002181 ... P05748 24662372
    170942 4v7f:P (8.7) BS01 rna ? GO:0000027 ... P26321 24662372
    170943 4v7f:P (8.7) BS02 rna ? GO:0000027 ... P26321 24662372
    170944 4v7f:Q (8.7) BS01 rna ? GO:0002181 ... P0CX49 24662372
    170945 4v7f:R (8.7) BS01 rna ? GO:0002181 ... P0CX82 24662372
    170946 4v7f:T (8.7) BS01 rna ? GO:0002181 ... Q02753 24662372
    170947 4v7f:U (8.7) BS01 rna ? GO:0000448 ... P05740 24662372
    170948 4v7f:W (8.7) BS01 rna ? GO:0000027 ... P04456 24662372
    170949 4v7f:Y (8.7) BS01 rna ? GO:0002181 ... P0C2H6 24662372
    170950 4v7f:d (8.7) BS01 rna ? GO:0002181 ... P38061 24662372
    170951 4v7f:e (8.7) BS01 rna ? GO:0000027 ... P05744 24662372
    170952 4v7f:f (8.7) BS01 rna ? GO:0002181 ... P87262 24662372
    170953 4v7f:g (8.7) BS01 rna ? GO:0002181 ... P05745 24662372
    170954 4v7f:k (8.7) BS01 rna ? GO:0002181 ... P0CX25 24662372
    170955 4v7f:l (8.7) BS01 rna 3.-.-.- GO:0000055 ... Q03862 24662372
    170956 4v7f:n (8.7) BS01 rna ? GO:0000027 ... P33201 24662372
    170957 4v7f:o (8.7) BS01 rna ? GO:0000054 ... Q02892 24662372
    170958 4v7h:AB (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170959 4v7h:AC (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    170960 4v7h:AD (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    170961 4v7h:AE (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    170962 4v7h:AG (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    170963 4v7h:AH (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170964 4v7h:AI (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170965 4v7h:AJ (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    170966 4v7h:AK (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170967 4v7h:AL (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170968 4v7h:AM (8.9) BS01 rna N/A GO:0003676 ... N/A 20004163
    170969 4v7h:AN (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170970 4v7h:AO (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170971 4v7h:AO (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170972 4v7h:AQ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170973 4v7h:AS (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170974 4v7h:AT (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170975 4v7h:B0 (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170976 4v7h:B1 (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170977 4v7h:B1 (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170978 4v7h:B9 (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170979 4v7h:BA (8.9) BS01 rna N/A GO:0003723 ... N/A 20004163
    170980 4v7h:BA (8.9) BS02 rna N/A GO:0003723 ... N/A 20004163
    170981 4v7h:BB (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170982 4v7h:BB (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170983 4v7h:BC (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170984 4v7h:BD (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170985 4v7h:BD (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170986 4v7h:BE (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170987 4v7h:BE (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170988 4v7h:BG (8.9) BS01 rna N/A GO:0042254 ... N/A 20004163
    170989 4v7h:BG (8.9) BS02 rna N/A GO:0042254 ... N/A 20004163
    170990 4v7h:BH (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170991 4v7h:BI (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170992 4v7h:BI (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170993 4v7h:BJ (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170994 4v7h:BJ (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170995 4v7h:BK (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170996 4v7h:BL (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170997 4v7h:BL (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    170998 4v7h:BM (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    170999 4v7h:BN (8.9) BS01 rna N/A GO:0003735 ... N/A 20004163
    171000 4v7h:BN (8.9) BS02 rna N/A GO:0003735 ... N/A 20004163
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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