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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    170601 4v7a:AP (9.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    170602 4v7a:AQ (9.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    170603 4v7a:AR (9.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    170604 4v7a:AS (9.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    170605 4v7a:AT (9.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    170606 4v7a:AU (9.0) BS01 rna ? GO:0003735 ... P68679 24186064
    170607 4v7a:B0 (9.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    170608 4v7a:B1 (9.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    170609 4v7a:B2 (9.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    170610 4v7a:B3 (9.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    170611 4v7a:B4 (9.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    170612 4v7a:B5 (9.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    170613 4v7a:BC (9.0) BS01 rna ? GO:0000027 ... P60422 24186064
    170614 4v7a:BD (9.0) BS01 rna ? GO:0000027 ... P60438 24186064
    170615 4v7a:BE (9.0) BS01 rna ? GO:0001070 ... P60723 24186064
    170616 4v7a:BF (9.0) BS01 rna ? GO:0000027 ... P62399 24186064
    170617 4v7a:BF (9.0) BS02 rna ? GO:0000027 ... P62399 24186064
    170618 4v7a:BF (9.0) BS03 rna ? GO:0000027 ... P62399 24186064
    170619 4v7a:BG (9.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    170620 4v7a:BH (9.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    170621 4v7a:BI (9.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    170622 4v7a:BJ (9.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    170623 4v7a:BK (9.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    170624 4v7a:BK (9.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    170625 4v7a:BL (9.0) BS01 rna ? GO:0002181 ... P02413 24186064
    170626 4v7a:BM (9.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    170627 4v7a:BM (9.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    170628 4v7a:BN (9.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    170629 4v7a:BO (9.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    170630 4v7a:BO (9.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    170631 4v7a:BP (9.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    170632 4v7a:BP (9.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    170633 4v7a:BQ (9.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    170634 4v7a:BR (9.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    170635 4v7a:BS (9.0) BS01 rna ? GO:0002181 ... P61175 24186064
    170636 4v7a:BT (9.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    170637 4v7a:BU (9.0) BS01 rna ? GO:0000027 ... P60624 24186064
    170638 4v7a:BV (9.0) BS01 rna ? GO:0000027 ... P68919 24186064
    170639 4v7a:BW (9.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    170640 4v7a:BW (9.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    170641 4v7a:BX (9.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    170642 4v7a:BY (9.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    170643 4v7a:BZ (9.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    170644 4v7a:BZ (9.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    170645 4v7b:AB (6.8) BS01 rna ? GO:0000028 ... P0A7V0 24324168
    170646 4v7b:AC (6.8) BS01 rna ? GO:0000028 ... P0A7V3 24324168
    170647 4v7b:AD (6.8) BS01 rna ? GO:0000028 ... P0A7V8 24324168
    170648 4v7b:AE (6.8) BS01 rna ? GO:0000028 ... P0A7W1 24324168
    170649 4v7b:AE (6.8) BS02 rna ? GO:0000028 ... P0A7W1 24324168
    170650 4v7b:AF (6.8) BS01 rna ? GO:0002181 ... P02358 24324168
    170651 4v7b:AG (6.8) BS01 rna ? GO:0000028 ... P02359 24324168
    170652 4v7b:AH (6.8) BS01 rna ? GO:0000028 ... P0A7W7 24324168
    170653 4v7b:AI (6.8) BS01 rna ? GO:0000049 ... P0A7X3 24324168
    170654 4v7b:AI (6.8) BS02 rna ? GO:0000049 ... P0A7X3 24324168
    170655 4v7b:AJ (6.8) BS01 rna ? GO:0000049 ... P0A7R5 24324168
    170656 4v7b:AK (6.8) BS01 rna ? GO:0002181 ... P0A7R9 24324168
    170657 4v7b:AL (6.8) BS01 rna ? GO:0000049 ... P0A7S3 24324168
    170658 4v7b:AM (6.8) BS01 rna ? GO:0000049 ... P0A7S9 24324168
    170659 4v7b:AN (6.8) BS01 rna ? GO:0000028 ... P0AG59 24324168
    170660 4v7b:AO (6.8) BS01 rna ? GO:0000028 ... P0ADZ4 24324168
    170661 4v7b:AP (6.8) BS01 rna ? GO:0000028 ... P0A7T3 24324168
    170662 4v7b:AQ (6.8) BS01 rna ? GO:0000028 ... P0AG63 24324168
    170663 4v7b:AR (6.8) BS01 rna ? GO:0002181 ... P0A7T7 24324168
    170664 4v7b:AS (6.8) BS01 rna ? GO:0000028 ... P0A7U3 24324168
    170665 4v7b:AT (6.8) BS01 rna ? GO:0000028 ... P0A7U7 24324168
    170666 4v7b:AU (6.8) BS01 rna ? GO:0000028 ... P68679 24324168
    170667 4v7b:AU (6.8) BS02 rna ? GO:0000028 ... P68679 24324168
    170668 4v7b:AY (6.8) BS01 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    170669 4v7b:AY (6.8) BS02 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    170670 4v7b:AY (6.8) BS03 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    170671 4v7b:AY (6.8) BS04 rna 3.6.5.- GO:0003746 ... P0A6M8 24324168
    170672 4v7b:AY (6.8) BS05 FUA 3.6.5.- GO:0003746 ... P0A6M8 24324168
    170673 4v7b:AY (6.8) BS06 GDP 3.6.5.- GO:0003746 ... P0A6M8 24324168
    170674 4v7b:B0 (6.8) BS01 rna ? GO:0000027 ... P0A7N4 24324168
    170675 4v7b:B1 (6.8) BS01 rna ? GO:0000027 ... P0A7N9 24324168
    170676 4v7b:B2 (6.8) BS01 rna ? GO:0002181 ... P0A7P5 24324168
    170677 4v7b:B3 (6.8) BS01 rna ? GO:0002181 ... P0A7Q1 24324168
    170678 4v7b:B4 (6.8) BS01 rna ? GO:0002181 ... P0A7Q6 24324168
    170679 4v7b:B5 (6.8) BS01 rna ? GO:0002181 ... P0A7J3 24324168
    170680 4v7b:BC (6.8) BS01 rna ? GO:0000027 ... P60422 24324168
    170681 4v7b:BD (6.8) BS01 rna ? GO:0000027 ... P60438 24324168
    170682 4v7b:BE (6.8) BS01 rna ? GO:0001070 ... P60723 24324168
    170683 4v7b:BF (6.8) BS01 rna ? GO:0000027 ... P62399 24324168
    170684 4v7b:BF (6.8) BS02 rna ? GO:0000027 ... P62399 24324168
    170685 4v7b:BF (6.8) BS03 rna ? GO:0000027 ... P62399 24324168
    170686 4v7b:BG (6.8) BS01 rna ? GO:0000027 ... P0AG55 24324168
    170687 4v7b:BH (6.8) BS01 rna ? GO:0003735 ... P0A7R1 24324168
    170688 4v7b:BI (6.8) BS01 rna ? GO:0000027 ... P0A7J7 24324168
    170689 4v7b:BJ (6.8) BS01 rna ? GO:0002181 ... P0AA10 24324168
    170690 4v7b:BK (6.8) BS01 rna ? GO:0002181 ... P0ADY3 24324168
    170691 4v7b:BK (6.8) BS02 rna ? GO:0002181 ... P0ADY3 24324168
    170692 4v7b:BL (6.8) BS01 rna ? GO:0002181 ... P02413 24324168
    170693 4v7b:BM (6.8) BS01 rna ? GO:0000027 ... P0ADY7 24324168
    170694 4v7b:BM (6.8) BS02 rna ? GO:0000027 ... P0ADY7 24324168
    170695 4v7b:BN (6.8) BS01 rna ? GO:0000027 ... P0AG44 24324168
    170696 4v7b:BO (6.8) BS01 rna ? GO:0002181 ... P0C018 24324168
    170697 4v7b:BO (6.8) BS02 rna ? GO:0002181 ... P0C018 24324168
    170698 4v7b:BP (6.8) BS01 rna ? GO:0000027 ... P0A7K6 24324168
    170699 4v7b:BP (6.8) BS02 rna ? GO:0000027 ... P0A7K6 24324168
    170700 4v7b:BQ (6.8) BS01 rna ? GO:0000027 ... P0A7L3 24324168
    170701 4v7b:BR (6.8) BS01 rna ? GO:0002181 ... P0AG48 24324168
    170702 4v7b:BS (6.8) BS01 rna ? GO:0002181 ... P61175 24324168
    170703 4v7b:BT (6.8) BS01 rna ? GO:0000027 ... P0ADZ0 24324168
    170704 4v7b:BU (6.8) BS01 rna ? GO:0000027 ... P60624 24324168
    170705 4v7b:BV (6.8) BS01 rna ? GO:0000027 ... P68919 24324168
    170706 4v7b:BV (6.8) BS02 rna ? GO:0000027 ... P68919 24324168
    170707 4v7b:BW (6.8) BS01 rna ? GO:0000027 ... P0A7L8 24324168
    170708 4v7b:BX (6.8) BS01 rna ? GO:0000027 ... P0A7M2 24324168
    170709 4v7b:BY (6.8) BS01 rna ? GO:0000027 ... P0A7M6 24324168
    170710 4v7b:BZ (6.8) BS01 rna ? GO:0000027 ... P0AG51 24324168
    170711 4v7b:BZ (6.8) BS02 rna ? GO:0000027 ... P0AG51 24324168
    170712 4v7c:AB (7.6) BS01 rna ? GO:0000028 ... P0A7V0 24324137
    170713 4v7c:AC (7.6) BS01 rna ? GO:0000028 ... P0A7V3 24324137
    170714 4v7c:AD (7.6) BS01 rna ? GO:0000028 ... P0A7V8 24324137
    170715 4v7c:AE (7.6) BS01 rna ? GO:0000028 ... P0A7W1 24324137
    170716 4v7c:AF (7.6) BS01 rna ? GO:0002181 ... P02358 24324137
    170717 4v7c:AG (7.6) BS01 rna ? GO:0000028 ... P02359 24324137
    170718 4v7c:AH (7.6) BS01 rna ? GO:0000028 ... P0A7W7 24324137
    170719 4v7c:AI (7.6) BS01 rna ? GO:0000049 ... P0A7X3 24324137
    170720 4v7c:AJ (7.6) BS01 rna ? GO:0000049 ... P0A7R5 24324137
    170721 4v7c:AK (7.6) BS01 rna ? GO:0002181 ... P0A7R9 24324137
    170722 4v7c:AL (7.6) BS01 rna ? GO:0000049 ... P0A7S3 24324137
    170723 4v7c:AM (7.6) BS01 rna ? GO:0000049 ... P0A7S9 24324137
    170724 4v7c:AN (7.6) BS01 rna ? GO:0000028 ... P0AG59 24324137
    170725 4v7c:AO (7.6) BS01 rna ? GO:0000028 ... P0ADZ4 24324137
    170726 4v7c:AO (7.6) BS02 rna ? GO:0000028 ... P0ADZ4 24324137
    170727 4v7c:AP (7.6) BS01 rna ? GO:0000028 ... P0A7T3 24324137
    170728 4v7c:AQ (7.6) BS01 rna ? GO:0000028 ... P0AG63 24324137
    170729 4v7c:AR (7.6) BS01 rna ? GO:0002181 ... P0A7T7 24324137
    170730 4v7c:AS (7.6) BS01 rna ? GO:0000028 ... P0A7U3 24324137
    170731 4v7c:AT (7.6) BS01 rna ? GO:0000028 ... P0A7U7 24324137
    170732 4v7c:AU (7.6) BS01 rna ? GO:0000028 ... P68679 24324137
    170733 4v7c:AU (7.6) BS02 rna ? GO:0000028 ... P68679 24324137
    170734 4v7c:B1 (7.6) BS01 rna ? GO:0000027 ... P0A7M6 24324137
    170735 4v7c:B2 (7.6) BS01 rna ? GO:0000027 ... P0AG51 24324137
    170736 4v7c:B2 (7.6) BS02 rna ? GO:0000027 ... P0AG51 24324137
    170737 4v7c:B3 (7.6) BS01 rna ? GO:0000027 ... P0A7N4 24324137
    170738 4v7c:B4 (7.6) BS01 rna ? GO:0000027 ... P0A7N9 24324137
    170739 4v7c:B5 (7.6) BS01 rna ? GO:0002181 ... P0A7P5 24324137
    170740 4v7c:B6 (7.6) BS01 rna ? GO:0002181 ... P0A7Q1 24324137
    170741 4v7c:B7 (7.6) BS01 rna ? GO:0002181 ... P0A7Q6 24324137
    170742 4v7c:B7 (7.6) BS02 ZN ? GO:0002181 ... P0A7Q6 24324137
    170743 4v7c:BC (7.6) BS01 rna ? GO:0000027 ... P0A7L0 24324137
    170744 4v7c:BD (7.6) BS01 rna ? GO:0000027 ... P60422 24324137
    170745 4v7c:BD (7.6) BS02 rna ? GO:0000027 ... P60422 24324137
    170746 4v7c:BE (7.6) BS01 rna ? GO:0000027 ... P60438 24324137
    170747 4v7c:BF (7.6) BS01 rna ? GO:0001070 ... P60723 24324137
    170748 4v7c:BG (7.6) BS01 rna ? GO:0000027 ... P62399 24324137
    170749 4v7c:BG (7.6) BS02 rna ? GO:0000027 ... P62399 24324137
    170750 4v7c:BH (7.6) BS01 rna ? GO:0000027 ... P0AG55 24324137
    170751 4v7c:BI (7.6) BS01 rna ? GO:0002181 ... P0A7R1 24324137
    170752 4v7c:BJ (7.6) BS01 rna ? GO:0002181 ... P0A7J3 24324137
    170753 4v7c:BK (7.6) BS01 rna ? GO:0000027 ... P0A7J7 24324137
    170754 4v7c:BL (7.6) BS01 rna ? GO:0002181 ... P0AA10 24324137
    170755 4v7c:BM (7.6) BS01 rna ? GO:0002181 ... P0ADY3 24324137
    170756 4v7c:BM (7.6) BS02 rna ? GO:0002181 ... P0ADY3 24324137
    170757 4v7c:BN (7.6) BS01 rna ? GO:0002181 ... P02413 24324137
    170758 4v7c:BO (7.6) BS01 rna ? GO:0000027 ... P0ADY7 24324137
    170759 4v7c:BO (7.6) BS02 rna ? GO:0000027 ... P0ADY7 24324137
    170760 4v7c:BO (7.6) BS03 rna ? GO:0000027 ... P0ADY7 24324137
    170761 4v7c:BP (7.6) BS01 rna ? GO:0000027 ... P0AG44 24324137
    170762 4v7c:BQ (7.6) BS01 rna ? GO:0002181 ... P0C018 24324137
    170763 4v7c:BQ (7.6) BS02 rna ? GO:0002181 ... P0C018 24324137
    170764 4v7c:BR (7.6) BS01 rna ? GO:0000027 ... P0A7K6 24324137
    170765 4v7c:BS (7.6) BS01 rna ? GO:0000027 ... P0A7L3 24324137
    170766 4v7c:BT (7.6) BS01 rna ? GO:0002181 ... P0AG48 24324137
    170767 4v7c:BU (7.6) BS01 rna ? GO:0002181 ... P61175 24324137
    170768 4v7c:BV (7.6) BS01 rna ? GO:0000027 ... P0ADZ0 24324137
    170769 4v7c:BW (7.6) BS01 rna ? GO:0000027 ... P60624 24324137
    170770 4v7c:BX (7.6) BS01 rna ? GO:0000027 ... P68919 24324137
    170771 4v7c:BX (7.6) BS02 rna ? GO:0000027 ... P68919 24324137
    170772 4v7c:BY (7.6) BS01 rna ? GO:0000027 ... P0A7L8 24324137
    170773 4v7c:BY (7.6) BS02 rna ? GO:0000027 ... P0A7L8 24324137
    170774 4v7c:BZ (7.6) BS01 rna ? GO:0000027 ... P0A7M2 24324137
    170775 4v7d:A1 (7.6) BS01 rna ? GO:0000027 ... P0A7M2 24324137
    170776 4v7d:A2 (7.6) BS01 rna ? GO:0000027 ... P0A7M6 24324137
    170777 4v7d:A3 (7.6) BS01 rna ? GO:0000027 ... P0AG51 24324137
    170778 4v7d:A3 (7.6) BS02 rna ? GO:0000027 ... P0AG51 24324137
    170779 4v7d:A4 (7.6) BS01 rna ? GO:0000027 ... P0A7N4 24324137
    170780 4v7d:A5 (7.6) BS01 rna ? GO:0000027 ... P0A7N9 24324137
    170781 4v7d:A6 (7.6) BS01 rna ? GO:0002181 ... P0A7P5 24324137
    170782 4v7d:A7 (7.6) BS01 rna ? GO:0002181 ... P0A7Q1 24324137
    170783 4v7d:A8 (7.6) BS01 rna ? GO:0002181 ... P0A7Q6 24324137
    170784 4v7d:A8 (7.6) BS02 ZN ? GO:0002181 ... P0A7Q6 24324137
    170785 4v7d:AC (7.6) BS01 rna ? GO:0000027 ... P0A7L0 24324137
    170786 4v7d:AD (7.6) BS01 rna ? GO:0000027 ... P60422 24324137
    170787 4v7d:AD (7.6) BS02 rna ? GO:0000027 ... P60422 24324137
    170788 4v7d:AE (7.6) BS01 rna ? GO:0000027 ... P60438 24324137
    170789 4v7d:AF (7.6) BS01 rna ? GO:0001070 ... P60723 24324137
    170790 4v7d:AG (7.6) BS01 rna ? GO:0000027 ... P62399 24324137
    170791 4v7d:AG (7.6) BS02 rna ? GO:0000027 ... P62399 24324137
    170792 4v7d:AH (7.6) BS01 rna ? GO:0000027 ... P0AG55 24324137
    170793 4v7d:AI (7.6) BS01 rna ? GO:0002181 ... P0A7R1 24324137
    170794 4v7d:AJ (7.6) BS01 rna ? GO:0002181 ... P0A7J3 24324137
    170795 4v7d:AK (7.6) BS01 rna ? GO:0000027 ... P0A7J7 24324137
    170796 4v7d:AM (7.6) BS01 rna ? GO:0002181 ... P0AA10 24324137
    170797 4v7d:AN (7.6) BS01 rna ? GO:0002181 ... P0ADY3 24324137
    170798 4v7d:AN (7.6) BS02 rna ? GO:0002181 ... P0ADY3 24324137
    170799 4v7d:AO (7.6) BS01 rna ? GO:0002181 ... P02413 24324137
    170800 4v7d:AP (7.6) BS01 rna ? GO:0000027 ... P0ADY7 24324137
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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