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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    170001 4v70:BM (17.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    170002 4v70:BM (17.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    170003 4v70:BN (17.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    170004 4v70:BO (17.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    170005 4v70:BO (17.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    170006 4v70:BP (17.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    170007 4v70:BP (17.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    170008 4v70:BQ (17.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    170009 4v70:BR (17.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    170010 4v70:BS (17.0) BS01 rna ? GO:0002181 ... P61175 24186064
    170011 4v70:BT (17.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    170012 4v70:BU (17.0) BS01 rna ? GO:0000027 ... P60624 24186064
    170013 4v70:BV (17.0) BS01 rna ? GO:0000027 ... P68919 24186064
    170014 4v70:BW (17.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    170015 4v70:BW (17.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    170016 4v70:BX (17.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    170017 4v70:BY (17.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    170018 4v70:BZ (17.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    170019 4v70:BZ (17.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    170020 4v71:AB (20.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    170021 4v71:AD (20.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    170022 4v71:AE (20.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    170023 4v71:AE (20.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    170024 4v71:AF (20.0) BS01 rna ? GO:0003735 ... P02358 24186064
    170025 4v71:AG (20.0) BS01 rna ? GO:0003723 ... P02359 24186064
    170026 4v71:AH (20.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    170027 4v71:AI (20.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    170028 4v71:AJ (20.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    170029 4v71:AK (20.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    170030 4v71:AK (20.0) BS02 rna ? GO:0002181 ... P0A7R9 24186064
    170031 4v71:AL (20.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    170032 4v71:AM (20.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    170033 4v71:AN (20.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    170034 4v71:AO (20.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    170035 4v71:AO (20.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    170036 4v71:AP (20.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    170037 4v71:AQ (20.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    170038 4v71:AR (20.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    170039 4v71:AS (20.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    170040 4v71:AT (20.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    170041 4v71:AU (20.0) BS01 rna ? GO:0003735 ... P68679 24186064
    170042 4v71:B0 (20.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    170043 4v71:B1 (20.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    170044 4v71:B2 (20.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    170045 4v71:B3 (20.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    170046 4v71:B4 (20.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    170047 4v71:B5 (20.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    170048 4v71:BC (20.0) BS01 rna ? GO:0000027 ... P60422 24186064
    170049 4v71:BC (20.0) BS02 rna ? GO:0000027 ... P60422 24186064
    170050 4v71:BD (20.0) BS01 rna ? GO:0000027 ... P60438 24186064
    170051 4v71:BE (20.0) BS01 rna ? GO:0001070 ... P60723 24186064
    170052 4v71:BF (20.0) BS01 rna ? GO:0000027 ... P62399 24186064
    170053 4v71:BF (20.0) BS02 rna ? GO:0000027 ... P62399 24186064
    170054 4v71:BF (20.0) BS03 rna ? GO:0000027 ... P62399 24186064
    170055 4v71:BG (20.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    170056 4v71:BH (20.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    170057 4v71:BI (20.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    170058 4v71:BJ (20.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    170059 4v71:BK (20.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    170060 4v71:BK (20.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    170061 4v71:BL (20.0) BS01 rna ? GO:0002181 ... P02413 24186064
    170062 4v71:BM (20.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    170063 4v71:BM (20.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    170064 4v71:BM (20.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    170065 4v71:BM (20.0) BS04 rna ? GO:0000027 ... P0ADY7 24186064
    170066 4v71:BN (20.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    170067 4v71:BO (20.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    170068 4v71:BO (20.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    170069 4v71:BP (20.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    170070 4v71:BP (20.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    170071 4v71:BQ (20.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    170072 4v71:BR (20.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    170073 4v71:BS (20.0) BS01 rna ? GO:0002181 ... P61175 24186064
    170074 4v71:BT (20.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    170075 4v71:BU (20.0) BS01 rna ? GO:0000027 ... P60624 24186064
    170076 4v71:BV (20.0) BS01 rna ? GO:0000027 ... P68919 24186064
    170077 4v71:BW (20.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    170078 4v71:BX (20.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    170079 4v71:BY (20.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    170080 4v71:BZ (20.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    170081 4v71:BZ (20.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    170082 4v72:AB (13.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    170083 4v72:AD (13.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    170084 4v72:AE (13.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    170085 4v72:AE (13.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    170086 4v72:AF (13.0) BS01 rna ? GO:0003735 ... P02358 24186064
    170087 4v72:AG (13.0) BS01 rna ? GO:0003723 ... P02359 24186064
    170088 4v72:AG (13.0) BS02 rna ? GO:0003723 ... P02359 24186064
    170089 4v72:AH (13.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    170090 4v72:AI (13.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    170091 4v72:AI (13.0) BS02 rna ? GO:0000049 ... P0A7X3 24186064
    170092 4v72:AJ (13.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    170093 4v72:AK (13.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    170094 4v72:AL (13.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    170095 4v72:AM (13.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    170096 4v72:AN (13.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    170097 4v72:AO (13.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    170098 4v72:AO (13.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    170099 4v72:AP (13.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    170100 4v72:AQ (13.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    170101 4v72:AR (13.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    170102 4v72:AS (13.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    170103 4v72:AT (13.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    170104 4v72:AU (13.0) BS01 rna ? GO:0003735 ... P68679 24186064
    170105 4v72:B0 (13.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    170106 4v72:B1 (13.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    170107 4v72:B1 (13.0) BS02 rna ? GO:0000027 ... P0A7N9 24186064
    170108 4v72:B2 (13.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    170109 4v72:B3 (13.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    170110 4v72:B4 (13.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    170111 4v72:B5 (13.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    170112 4v72:B5 (13.0) BS02 rna ? GO:0000027 ... P0A7L0 24186064
    170113 4v72:BC (13.0) BS01 rna ? GO:0000027 ... P60422 24186064
    170114 4v72:BC (13.0) BS02 rna ? GO:0000027 ... P60422 24186064
    170115 4v72:BD (13.0) BS01 rna ? GO:0000027 ... P60438 24186064
    170116 4v72:BE (13.0) BS01 rna ? GO:0001070 ... P60723 24186064
    170117 4v72:BF (13.0) BS01 rna ? GO:0000027 ... P62399 24186064
    170118 4v72:BF (13.0) BS02 rna ? GO:0000027 ... P62399 24186064
    170119 4v72:BG (13.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    170120 4v72:BI (13.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    170121 4v72:BJ (13.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    170122 4v72:BK (13.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    170123 4v72:BK (13.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    170124 4v72:BL (13.0) BS01 rna ? GO:0002181 ... P02413 24186064
    170125 4v72:BM (13.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    170126 4v72:BM (13.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    170127 4v72:BM (13.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    170128 4v72:BN (13.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    170129 4v72:BO (13.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    170130 4v72:BO (13.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    170131 4v72:BP (13.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    170132 4v72:BP (13.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    170133 4v72:BQ (13.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    170134 4v72:BR (13.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    170135 4v72:BS (13.0) BS01 rna ? GO:0002181 ... P61175 24186064
    170136 4v72:BT (13.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    170137 4v72:BU (13.0) BS01 rna ? GO:0000027 ... P60624 24186064
    170138 4v72:BV (13.0) BS01 rna ? GO:0000027 ... P68919 24186064
    170139 4v72:BW (13.0) BS01 rna ? GO:0000027 ... P0A7L8 24186064
    170140 4v72:BW (13.0) BS02 rna ? GO:0000027 ... P0A7L8 24186064
    170141 4v72:BX (13.0) BS01 rna ? GO:0000027 ... P0A7M2 24186064
    170142 4v72:BY (13.0) BS01 rna ? GO:0000027 ... P0A7M6 24186064
    170143 4v72:BZ (13.0) BS01 rna ? GO:0000027 ... P0AG51 24186064
    170144 4v72:BZ (13.0) BS02 rna ? GO:0000027 ... P0AG51 24186064
    170145 4v73:AB (15.0) BS01 rna ? GO:0000028 ... P0A7V0 24186064
    170146 4v73:AD (15.0) BS01 rna ? GO:0000028 ... P0A7V8 24186064
    170147 4v73:AD (15.0) BS02 rna ? GO:0000028 ... P0A7V8 24186064
    170148 4v73:AE (15.0) BS01 rna ? GO:0000028 ... P0A7W1 24186064
    170149 4v73:AE (15.0) BS02 rna ? GO:0000028 ... P0A7W1 24186064
    170150 4v73:AF (15.0) BS01 rna ? GO:0003735 ... P02358 24186064
    170151 4v73:AG (15.0) BS01 rna ? GO:0003723 ... P02359 24186064
    170152 4v73:AG (15.0) BS02 rna ? GO:0003723 ... P02359 24186064
    170153 4v73:AH (15.0) BS01 rna ? GO:0000028 ... P0A7W7 24186064
    170154 4v73:AI (15.0) BS01 rna ? GO:0000049 ... P0A7X3 24186064
    170155 4v73:AJ (15.0) BS01 rna ? GO:0000049 ... P0A7R5 24186064
    170156 4v73:AK (15.0) BS01 rna ? GO:0002181 ... P0A7R9 24186064
    170157 4v73:AL (15.0) BS01 rna ? GO:0000049 ... P0A7S3 24186064
    170158 4v73:AM (15.0) BS01 rna ? GO:0000049 ... P0A7S9 24186064
    170159 4v73:AN (15.0) BS01 rna ? GO:0000028 ... P0AG59 24186064
    170160 4v73:AO (15.0) BS01 rna ? GO:0000028 ... P0ADZ4 24186064
    170161 4v73:AO (15.0) BS02 rna ? GO:0000028 ... P0ADZ4 24186064
    170162 4v73:AP (15.0) BS01 rna ? GO:0000028 ... P0A7T3 24186064
    170163 4v73:AQ (15.0) BS01 rna ? GO:0000028 ... P0AG63 24186064
    170164 4v73:AR (15.0) BS01 rna ? GO:0003735 ... P0A7T7 24186064
    170165 4v73:AS (15.0) BS01 rna ? GO:0003723 ... P0A7U3 24186064
    170166 4v73:AS (15.0) BS02 rna ? GO:0003723 ... P0A7U3 24186064
    170167 4v73:AT (15.0) BS01 rna ? GO:0000028 ... P0A7U7 24186064
    170168 4v73:AU (15.0) BS01 rna ? GO:0003735 ... P68679 24186064
    170169 4v73:B0 (15.0) BS01 rna ? GO:0000027 ... P0A7N4 24186064
    170170 4v73:B1 (15.0) BS01 rna ? GO:0000027 ... P0A7N9 24186064
    170171 4v73:B2 (15.0) BS01 rna ? GO:0002181 ... P0A7P5 24186064
    170172 4v73:B3 (15.0) BS01 rna ? GO:0002181 ... P0A7Q1 24186064
    170173 4v73:B4 (15.0) BS01 rna ? GO:0002181 ... P0A7Q6 24186064
    170174 4v73:B5 (15.0) BS01 rna ? GO:0000027 ... P0A7L0 24186064
    170175 4v73:B5 (15.0) BS02 rna ? GO:0000027 ... P0A7L0 24186064
    170176 4v73:BC (15.0) BS01 rna ? GO:0000027 ... P60422 24186064
    170177 4v73:BC (15.0) BS02 rna ? GO:0000027 ... P60422 24186064
    170178 4v73:BD (15.0) BS01 rna ? GO:0000027 ... P60438 24186064
    170179 4v73:BE (15.0) BS01 rna ? GO:0001070 ... P60723 24186064
    170180 4v73:BF (15.0) BS01 rna ? GO:0000027 ... P62399 24186064
    170181 4v73:BF (15.0) BS02 rna ? GO:0000027 ... P62399 24186064
    170182 4v73:BG (15.0) BS01 rna ? GO:0000027 ... P0AG55 24186064
    170183 4v73:BH (15.0) BS01 rna ? GO:0002181 ... P0A7R1 24186064
    170184 4v73:BI (15.0) BS01 rna ? GO:0000027 ... P0A7J7 24186064
    170185 4v73:BJ (15.0) BS01 rna ? GO:0002181 ... P0AA10 24186064
    170186 4v73:BK (15.0) BS01 rna ? GO:0002181 ... P0ADY3 24186064
    170187 4v73:BK (15.0) BS02 rna ? GO:0002181 ... P0ADY3 24186064
    170188 4v73:BL (15.0) BS01 rna ? GO:0002181 ... P02413 24186064
    170189 4v73:BM (15.0) BS01 rna ? GO:0000027 ... P0ADY7 24186064
    170190 4v73:BM (15.0) BS02 rna ? GO:0000027 ... P0ADY7 24186064
    170191 4v73:BM (15.0) BS03 rna ? GO:0000027 ... P0ADY7 24186064
    170192 4v73:BN (15.0) BS01 rna ? GO:0000027 ... P0AG44 24186064
    170193 4v73:BO (15.0) BS01 rna ? GO:0002181 ... P0C018 24186064
    170194 4v73:BO (15.0) BS02 rna ? GO:0002181 ... P0C018 24186064
    170195 4v73:BP (15.0) BS01 rna ? GO:0000027 ... P0A7K6 24186064
    170196 4v73:BP (15.0) BS02 rna ? GO:0000027 ... P0A7K6 24186064
    170197 4v73:BQ (15.0) BS01 rna ? GO:0000027 ... P0A7L3 24186064
    170198 4v73:BR (15.0) BS01 rna ? GO:0002181 ... P0AG48 24186064
    170199 4v73:BS (15.0) BS01 rna ? GO:0002181 ... P61175 24186064
    170200 4v73:BT (15.0) BS01 rna ? GO:0000027 ... P0ADZ0 24186064
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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