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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    169201 4v6q:AN (11.5) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    169202 4v6q:AN (11.5) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    169203 4v6q:AN (11.5) BS03 rna ? GO:0002181 ... P0A7R9 22467828
    169204 4v6q:AO (11.5) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    169205 4v6q:AP (11.5) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    169206 4v6q:AP (11.5) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    169207 4v6q:AQ (11.5) BS01 rna ? GO:0000028 ... P0AG59 22467828
    169208 4v6q:AR (11.5) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    169209 4v6q:AR (11.5) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    169210 4v6q:AS (11.5) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    169211 4v6q:AT (11.5) BS01 rna ? GO:0000028 ... P0AG63 22467828
    169212 4v6q:AU (11.5) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    169213 4v6q:AU (11.5) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    169214 4v6q:AV (11.5) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    169215 4v6q:AV (11.5) BS02 rna ? GO:0000028 ... P0A7U3 22467828
    169216 4v6q:AW (11.5) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    169217 4v6q:AX (11.5) BS01 rna ? GO:0000028 ... P68679 22467828
    169218 4v6q:AX (11.5) BS02 rna ? GO:0000028 ... P68679 22467828
    169219 4v6q:B0 (11.5) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    169220 4v6q:B1 (11.5) BS01 rna ? GO:0000027 ... P0AG51 22467828
    169221 4v6q:B1 (11.5) BS02 rna ? GO:0000027 ... P0AG51 22467828
    169222 4v6q:B2 (11.5) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    169223 4v6q:B2 (11.5) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    169224 4v6q:B3 (11.5) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    169225 4v6q:B4 (11.5) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    169226 4v6q:B5 (11.5) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    169227 4v6q:B6 (11.5) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    169228 4v6q:B7 (11.5) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    169229 4v6q:BC (11.5) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    169230 4v6q:BC (11.5) BS02 rna ? GO:0000027 ... P0A7L0 22467828
    169231 4v6q:BD (11.5) BS01 rna ? GO:0000027 ... P60422 22467828
    169232 4v6q:BD (11.5) BS02 rna ? GO:0000027 ... P60422 22467828
    169233 4v6q:BE (11.5) BS01 rna ? GO:0000027 ... P60438 22467828
    169234 4v6q:BF (11.5) BS01 rna ? GO:0001070 ... P60723 22467828
    169235 4v6q:BG (11.5) BS01 rna ? GO:0000027 ... P62399 22467828
    169236 4v6q:BG (11.5) BS02 rna ? GO:0000027 ... P62399 22467828
    169237 4v6q:BH (11.5) BS01 rna ? GO:0000027 ... P0AG55 22467828
    169238 4v6q:BI (11.5) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    169239 4v6q:BJ (11.5) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    169240 4v6q:BK (11.5) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    169241 4v6q:BL (11.5) BS01 rna ? GO:0002181 ... P0AA10 22467828
    169242 4v6q:BM (11.5) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    169243 4v6q:BM (11.5) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    169244 4v6q:BN (11.5) BS01 rna ? GO:0002181 ... P02413 22467828
    169245 4v6q:BO (11.5) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    169246 4v6q:BO (11.5) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    169247 4v6q:BO (11.5) BS03 rna ? GO:0000027 ... P0ADY7 22467828
    169248 4v6q:BP (11.5) BS01 rna ? GO:0000027 ... P0AG44 22467828
    169249 4v6q:BQ (11.5) BS01 rna ? GO:0002181 ... P0C018 22467828
    169250 4v6q:BQ (11.5) BS02 rna ? GO:0002181 ... P0C018 22467828
    169251 4v6q:BR (11.5) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    169252 4v6q:BR (11.5) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    169253 4v6q:BS (11.5) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    169254 4v6q:BT (11.5) BS01 rna ? GO:0002181 ... P0AG48 22467828
    169255 4v6q:BU (11.5) BS01 rna ? GO:0002181 ... P61175 22467828
    169256 4v6q:BV (11.5) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    169257 4v6q:BW (11.5) BS01 rna ? GO:0000027 ... P60624 22467828
    169258 4v6q:BX (11.5) BS01 rna ? GO:0000027 ... P68919 22467828
    169259 4v6q:BX (11.5) BS02 rna ? GO:0000027 ... P68919 22467828
    169260 4v6q:BY (11.5) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    169261 4v6q:BY (11.5) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    169262 4v6q:BY (11.5) BS03 rna ? GO:0000027 ... P0A7L8 22467828
    169263 4v6q:BZ (11.5) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    169264 4v6r:AE (11.5) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    169265 4v6r:AF (11.5) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    169266 4v6r:AF (11.5) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    169267 4v6r:AG (11.5) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    169268 4v6r:AG (11.5) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    169269 4v6r:AH (11.5) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    169270 4v6r:AH (11.5) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    169271 4v6r:AI (11.5) BS01 rna ? GO:0002181 ... P02358 22467828
    169272 4v6r:AI (11.5) BS02 rna ? GO:0002181 ... P02358 22467828
    169273 4v6r:AJ (11.5) BS01 rna ? GO:0000028 ... P02359 22467828
    169274 4v6r:AJ (11.5) BS02 rna ? GO:0000028 ... P02359 22467828
    169275 4v6r:AK (11.5) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    169276 4v6r:AL (11.5) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    169277 4v6r:AM (11.5) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    169278 4v6r:AN (11.5) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    169279 4v6r:AN (11.5) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    169280 4v6r:AO (11.5) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    169281 4v6r:AP (11.5) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    169282 4v6r:AP (11.5) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    169283 4v6r:AQ (11.5) BS01 rna ? GO:0000028 ... P0AG59 22467828
    169284 4v6r:AR (11.5) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    169285 4v6r:AR (11.5) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    169286 4v6r:AS (11.5) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    169287 4v6r:AT (11.5) BS01 rna ? GO:0000028 ... P0AG63 22467828
    169288 4v6r:AU (11.5) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    169289 4v6r:AU (11.5) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    169290 4v6r:AV (11.5) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    169291 4v6r:AV (11.5) BS02 rna ? GO:0000028 ... P0A7U3 22467828
    169292 4v6r:AV (11.5) BS03 rna ? GO:0000028 ... P0A7U3 22467828
    169293 4v6r:AW (11.5) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    169294 4v6r:AX (11.5) BS01 rna ? GO:0000028 ... P68679 22467828
    169295 4v6r:AX (11.5) BS02 rna ? GO:0000028 ... P68679 22467828
    169296 4v6r:B0 (11.5) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    169297 4v6r:B1 (11.5) BS01 rna ? GO:0000027 ... P0AG51 22467828
    169298 4v6r:B1 (11.5) BS02 rna ? GO:0000027 ... P0AG51 22467828
    169299 4v6r:B2 (11.5) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    169300 4v6r:B2 (11.5) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    169301 4v6r:B3 (11.5) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    169302 4v6r:B4 (11.5) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    169303 4v6r:B5 (11.5) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    169304 4v6r:B6 (11.5) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    169305 4v6r:B7 (11.5) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    169306 4v6r:BC (11.5) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    169307 4v6r:BD (11.5) BS01 rna ? GO:0000027 ... P60422 22467828
    169308 4v6r:BE (11.5) BS01 rna ? GO:0000027 ... P60438 22467828
    169309 4v6r:BF (11.5) BS01 rna ? GO:0001070 ... P60723 22467828
    169310 4v6r:BG (11.5) BS01 rna ? GO:0000027 ... P62399 22467828
    169311 4v6r:BG (11.5) BS02 rna ? GO:0000027 ... P62399 22467828
    169312 4v6r:BH (11.5) BS01 rna ? GO:0000027 ... P0AG55 22467828
    169313 4v6r:BI (11.5) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    169314 4v6r:BJ (11.5) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    169315 4v6r:BK (11.5) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    169316 4v6r:BL (11.5) BS01 rna ? GO:0002181 ... P0AA10 22467828
    169317 4v6r:BM (11.5) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    169318 4v6r:BM (11.5) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    169319 4v6r:BN (11.5) BS01 rna ? GO:0002181 ... P02413 22467828
    169320 4v6r:BO (11.5) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    169321 4v6r:BO (11.5) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    169322 4v6r:BO (11.5) BS03 rna ? GO:0000027 ... P0ADY7 22467828
    169323 4v6r:BP (11.5) BS01 rna ? GO:0000027 ... P0AG44 22467828
    169324 4v6r:BQ (11.5) BS01 rna ? GO:0002181 ... P0C018 22467828
    169325 4v6r:BQ (11.5) BS02 rna ? GO:0002181 ... P0C018 22467828
    169326 4v6r:BR (11.5) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    169327 4v6r:BR (11.5) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    169328 4v6r:BS (11.5) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    169329 4v6r:BT (11.5) BS01 rna ? GO:0002181 ... P0AG48 22467828
    169330 4v6r:BU (11.5) BS01 rna ? GO:0002181 ... P61175 22467828
    169331 4v6r:BV (11.5) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    169332 4v6r:BW (11.5) BS01 rna ? GO:0000027 ... P60624 22467828
    169333 4v6r:BX (11.5) BS01 rna ? GO:0000027 ... P68919 22467828
    169334 4v6r:BX (11.5) BS02 rna ? GO:0000027 ... P68919 22467828
    169335 4v6r:BY (11.5) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    169336 4v6r:BY (11.5) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    169337 4v6r:BY (11.5) BS03 rna ? GO:0000027 ... P0A7L8 22467828
    169338 4v6r:BZ (11.5) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    169339 4v6s:A0 (13.1) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    169340 4v6s:A1 (13.1) BS01 rna ? GO:0000027 ... P0AG51 22467828
    169341 4v6s:A1 (13.1) BS02 rna ? GO:0000027 ... P0AG51 22467828
    169342 4v6s:A2 (13.1) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    169343 4v6s:A2 (13.1) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    169344 4v6s:A3 (13.1) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    169345 4v6s:A4 (13.1) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    169346 4v6s:A5 (13.1) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    169347 4v6s:A6 (13.1) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    169348 4v6s:A7 (13.1) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    169349 4v6s:AC (13.1) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    169350 4v6s:AD (13.1) BS01 rna ? GO:0000027 ... P60422 22467828
    169351 4v6s:AD (13.1) BS02 rna ? GO:0000027 ... P60422 22467828
    169352 4v6s:AE (13.1) BS01 rna ? GO:0000027 ... P60438 22467828
    169353 4v6s:AF (13.1) BS01 rna ? GO:0001070 ... P60723 22467828
    169354 4v6s:AG (13.1) BS01 rna ? GO:0000027 ... P62399 22467828
    169355 4v6s:AG (13.1) BS02 rna ? GO:0000027 ... P62399 22467828
    169356 4v6s:AG (13.1) BS03 rna ? GO:0000027 ... P62399 22467828
    169357 4v6s:AH (13.1) BS01 rna ? GO:0000027 ... P0AG55 22467828
    169358 4v6s:AI (13.1) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    169359 4v6s:AJ (13.1) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    169360 4v6s:AK (13.1) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    169361 4v6s:AL (13.1) BS01 rna ? GO:0002181 ... P0AA10 22467828
    169362 4v6s:AM (13.1) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    169363 4v6s:AM (13.1) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    169364 4v6s:AN (13.1) BS01 rna ? GO:0002181 ... P02413 22467828
    169365 4v6s:AO (13.1) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    169366 4v6s:AO (13.1) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    169367 4v6s:AP (13.1) BS01 rna ? GO:0000027 ... P0AG44 22467828
    169368 4v6s:AQ (13.1) BS01 rna ? GO:0002181 ... P0C018 22467828
    169369 4v6s:AQ (13.1) BS02 rna ? GO:0002181 ... P0C018 22467828
    169370 4v6s:AR (13.1) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    169371 4v6s:AR (13.1) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    169372 4v6s:AS (13.1) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    169373 4v6s:AT (13.1) BS01 rna ? GO:0002181 ... P0AG48 22467828
    169374 4v6s:AU (13.1) BS01 rna ? GO:0002181 ... P61175 22467828
    169375 4v6s:AV (13.1) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    169376 4v6s:AW (13.1) BS01 rna ? GO:0000027 ... P60624 22467828
    169377 4v6s:AX (13.1) BS01 rna ? GO:0000027 ... P68919 22467828
    169378 4v6s:AX (13.1) BS02 rna ? GO:0000027 ... P68919 22467828
    169379 4v6s:AY (13.1) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    169380 4v6s:AY (13.1) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    169381 4v6s:AY (13.1) BS03 rna ? GO:0000027 ... P0A7L8 22467828
    169382 4v6s:AZ (13.1) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    169383 4v6s:BD (13.1) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    169384 4v6s:BD (13.1) BS02 rna ? GO:0000028 ... P0A7V0 22467828
    169385 4v6s:BE (13.1) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    169386 4v6s:BE (13.1) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    169387 4v6s:BF (13.1) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    169388 4v6s:BF (13.1) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    169389 4v6s:BG (13.1) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    169390 4v6s:BG (13.1) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    169391 4v6s:BH (13.1) BS01 rna ? GO:0002181 ... P02358 22467828
    169392 4v6s:BH (13.1) BS02 rna ? GO:0002181 ... P02358 22467828
    169393 4v6s:BI (13.1) BS01 rna ? GO:0000028 ... P02359 22467828
    169394 4v6s:BI (13.1) BS02 rna ? GO:0000028 ... P02359 22467828
    169395 4v6s:BJ (13.1) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    169396 4v6s:BK (13.1) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    169397 4v6s:BL (13.1) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    169398 4v6s:BM (13.1) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    169399 4v6s:BM (13.1) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    169400 4v6s:BN (13.1) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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