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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    169001 4v6n:AX (12.1) BS01 rna ? GO:0000027 ... P68919 22467828
    169002 4v6n:AX (12.1) BS02 rna ? GO:0000027 ... P68919 22467828
    169003 4v6n:AY (12.1) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    169004 4v6n:AY (12.1) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    169005 4v6n:AY (12.1) BS03 rna ? GO:0000027 ... P0A7L8 22467828
    169006 4v6n:AY (12.1) BS04 rna ? GO:0000027 ... P0A7L8 22467828
    169007 4v6n:AZ (12.1) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    169008 4v6n:BE (12.1) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    169009 4v6n:BF (12.1) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    169010 4v6n:BF (12.1) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    169011 4v6n:BG (12.1) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    169012 4v6n:BG (12.1) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    169013 4v6n:BH (12.1) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    169014 4v6n:BH (12.1) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    169015 4v6n:BI (12.1) BS01 rna ? GO:0002181 ... P02358 22467828
    169016 4v6n:BI (12.1) BS02 rna ? GO:0002181 ... P02358 22467828
    169017 4v6n:BJ (12.1) BS01 rna ? GO:0000028 ... P02359 22467828
    169018 4v6n:BJ (12.1) BS02 rna ? GO:0000028 ... P02359 22467828
    169019 4v6n:BK (12.1) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    169020 4v6n:BL (12.1) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    169021 4v6n:BM (12.1) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    169022 4v6n:BN (12.1) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    169023 4v6n:BN (12.1) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    169024 4v6n:BO (12.1) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    169025 4v6n:BP (12.1) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    169026 4v6n:BP (12.1) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    169027 4v6n:BP (12.1) BS03 rna ? GO:0000049 ... P0A7S9 22467828
    169028 4v6n:BQ (12.1) BS01 rna ? GO:0000028 ... P0AG59 22467828
    169029 4v6n:BR (12.1) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    169030 4v6n:BR (12.1) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    169031 4v6n:BS (12.1) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    169032 4v6n:BT (12.1) BS01 rna ? GO:0000028 ... P0AG63 22467828
    169033 4v6n:BU (12.1) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    169034 4v6n:BU (12.1) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    169035 4v6n:BV (12.1) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    169036 4v6n:BW (12.1) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    169037 4v6n:BX (12.1) BS01 rna ? GO:0000028 ... P68679 22467828
    169038 4v6n:BX (12.1) BS02 rna ? GO:0000028 ... P68679 22467828
    169039 4v6o:AE (14.7) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    169040 4v6o:AE (14.7) BS02 rna ? GO:0000028 ... P0A7V0 22467828
    169041 4v6o:AF (14.7) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    169042 4v6o:AF (14.7) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    169043 4v6o:AG (14.7) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    169044 4v6o:AG (14.7) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    169045 4v6o:AH (14.7) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    169046 4v6o:AH (14.7) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    169047 4v6o:AI (14.7) BS01 rna ? GO:0002181 ... P02358 22467828
    169048 4v6o:AI (14.7) BS02 rna ? GO:0002181 ... P02358 22467828
    169049 4v6o:AJ (14.7) BS01 rna ? GO:0000028 ... P02359 22467828
    169050 4v6o:AJ (14.7) BS02 rna ? GO:0000028 ... P02359 22467828
    169051 4v6o:AK (14.7) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    169052 4v6o:AL (14.7) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    169053 4v6o:AM (14.7) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    169054 4v6o:AN (14.7) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    169055 4v6o:AN (14.7) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    169056 4v6o:AO (14.7) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    169057 4v6o:AP (14.7) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    169058 4v6o:AP (14.7) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    169059 4v6o:AQ (14.7) BS01 rna ? GO:0000028 ... P0AG59 22467828
    169060 4v6o:AR (14.7) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    169061 4v6o:AR (14.7) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    169062 4v6o:AS (14.7) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    169063 4v6o:AT (14.7) BS01 rna ? GO:0000028 ... P0AG63 22467828
    169064 4v6o:AU (14.7) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    169065 4v6o:AU (14.7) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    169066 4v6o:AV (14.7) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    169067 4v6o:AW (14.7) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    169068 4v6o:AX (14.7) BS01 rna ? GO:0000028 ... P68679 22467828
    169069 4v6o:AX (14.7) BS02 rna ? GO:0000028 ... P68679 22467828
    169070 4v6o:B0 (14.7) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    169071 4v6o:B1 (14.7) BS01 rna ? GO:0000027 ... P0AG51 22467828
    169072 4v6o:B1 (14.7) BS02 rna ? GO:0000027 ... P0AG51 22467828
    169073 4v6o:B2 (14.7) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    169074 4v6o:B2 (14.7) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    169075 4v6o:B3 (14.7) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    169076 4v6o:B4 (14.7) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    169077 4v6o:B5 (14.7) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    169078 4v6o:B6 (14.7) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    169079 4v6o:B7 (14.7) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    169080 4v6o:BC (14.7) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    169081 4v6o:BD (14.7) BS01 rna ? GO:0000027 ... P60422 22467828
    169082 4v6o:BE (14.7) BS01 rna ? GO:0000027 ... P60438 22467828
    169083 4v6o:BF (14.7) BS01 rna ? GO:0001070 ... P60723 22467828
    169084 4v6o:BG (14.7) BS01 rna ? GO:0000027 ... P62399 22467828
    169085 4v6o:BG (14.7) BS02 rna ? GO:0000027 ... P62399 22467828
    169086 4v6o:BH (14.7) BS01 rna ? GO:0000027 ... P0AG55 22467828
    169087 4v6o:BI (14.7) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    169088 4v6o:BJ (14.7) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    169089 4v6o:BK (14.7) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    169090 4v6o:BL (14.7) BS01 rna ? GO:0002181 ... P0AA10 22467828
    169091 4v6o:BM (14.7) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    169092 4v6o:BM (14.7) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    169093 4v6o:BN (14.7) BS01 rna ? GO:0002181 ... P02413 22467828
    169094 4v6o:BO (14.7) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    169095 4v6o:BO (14.7) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    169096 4v6o:BO (14.7) BS03 rna ? GO:0000027 ... P0ADY7 22467828
    169097 4v6o:BP (14.7) BS01 rna ? GO:0000027 ... P0AG44 22467828
    169098 4v6o:BQ (14.7) BS01 rna ? GO:0002181 ... P0C018 22467828
    169099 4v6o:BQ (14.7) BS02 rna ? GO:0002181 ... P0C018 22467828
    169100 4v6o:BR (14.7) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    169101 4v6o:BR (14.7) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    169102 4v6o:BS (14.7) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    169103 4v6o:BT (14.7) BS01 rna ? GO:0002181 ... P0AG48 22467828
    169104 4v6o:BU (14.7) BS01 rna ? GO:0002181 ... P61175 22467828
    169105 4v6o:BV (14.7) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    169106 4v6o:BW (14.7) BS01 rna ? GO:0000027 ... P60624 22467828
    169107 4v6o:BX (14.7) BS01 rna ? GO:0000027 ... P68919 22467828
    169108 4v6o:BX (14.7) BS02 rna ? GO:0000027 ... P68919 22467828
    169109 4v6o:BY (14.7) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    169110 4v6o:BY (14.7) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    169111 4v6o:BY (14.7) BS03 rna ? GO:0000027 ... P0A7L8 22467828
    169112 4v6o:BZ (14.7) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    169113 4v6p:AE (13.5) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    169114 4v6p:AF (13.5) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    169115 4v6p:AF (13.5) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    169116 4v6p:AG (13.5) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    169117 4v6p:AG (13.5) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    169118 4v6p:AH (13.5) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    169119 4v6p:AH (13.5) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    169120 4v6p:AI (13.5) BS01 rna ? GO:0002181 ... P02358 22467828
    169121 4v6p:AI (13.5) BS02 rna ? GO:0002181 ... P02358 22467828
    169122 4v6p:AJ (13.5) BS01 rna ? GO:0000028 ... P02359 22467828
    169123 4v6p:AJ (13.5) BS02 rna ? GO:0000028 ... P02359 22467828
    169124 4v6p:AK (13.5) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    169125 4v6p:AL (13.5) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    169126 4v6p:AM (13.5) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    169127 4v6p:AN (13.5) BS01 rna ? GO:0002181 ... P0A7R9 22467828
    169128 4v6p:AN (13.5) BS02 rna ? GO:0002181 ... P0A7R9 22467828
    169129 4v6p:AN (13.5) BS03 rna ? GO:0002181 ... P0A7R9 22467828
    169130 4v6p:AO (13.5) BS01 rna ? GO:0000049 ... P0A7S3 22467828
    169131 4v6p:AP (13.5) BS01 rna ? GO:0000049 ... P0A7S9 22467828
    169132 4v6p:AP (13.5) BS02 rna ? GO:0000049 ... P0A7S9 22467828
    169133 4v6p:AQ (13.5) BS01 rna ? GO:0000028 ... P0AG59 22467828
    169134 4v6p:AR (13.5) BS01 rna ? GO:0003735 ... Q8X9M2 22467828
    169135 4v6p:AR (13.5) BS02 rna ? GO:0003735 ... Q8X9M2 22467828
    169136 4v6p:AS (13.5) BS01 rna ? GO:0000028 ... P0A7T3 22467828
    169137 4v6p:AT (13.5) BS01 rna ? GO:0000028 ... P0AG63 22467828
    169138 4v6p:AU (13.5) BS01 rna ? GO:0002181 ... P0A7T7 22467828
    169139 4v6p:AU (13.5) BS02 rna ? GO:0002181 ... P0A7T7 22467828
    169140 4v6p:AV (13.5) BS01 rna ? GO:0000028 ... P0A7U3 22467828
    169141 4v6p:AV (13.5) BS02 rna ? GO:0000028 ... P0A7U3 22467828
    169142 4v6p:AV (13.5) BS03 rna ? GO:0000028 ... P0A7U3 22467828
    169143 4v6p:AW (13.5) BS01 rna ? GO:0000028 ... P0A7U7 22467828
    169144 4v6p:AX (13.5) BS01 rna ? GO:0000028 ... P68679 22467828
    169145 4v6p:AX (13.5) BS02 rna ? GO:0000028 ... P68679 22467828
    169146 4v6p:B0 (13.5) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    169147 4v6p:B1 (13.5) BS01 rna ? GO:0000027 ... P0AG51 22467828
    169148 4v6p:B1 (13.5) BS02 rna ? GO:0000027 ... P0AG51 22467828
    169149 4v6p:B2 (13.5) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    169150 4v6p:B2 (13.5) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    169151 4v6p:B3 (13.5) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    169152 4v6p:B4 (13.5) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    169153 4v6p:B5 (13.5) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    169154 4v6p:B6 (13.5) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    169155 4v6p:B7 (13.5) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    169156 4v6p:BC (13.5) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    169157 4v6p:BD (13.5) BS01 rna ? GO:0000027 ... P60422 22467828
    169158 4v6p:BE (13.5) BS01 rna ? GO:0000027 ... P60438 22467828
    169159 4v6p:BF (13.5) BS01 rna ? GO:0001070 ... P60723 22467828
    169160 4v6p:BG (13.5) BS01 rna ? GO:0000027 ... P62399 22467828
    169161 4v6p:BG (13.5) BS02 rna ? GO:0000027 ... P62399 22467828
    169162 4v6p:BH (13.5) BS01 rna ? GO:0000027 ... P0AG55 22467828
    169163 4v6p:BI (13.5) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    169164 4v6p:BJ (13.5) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    169165 4v6p:BK (13.5) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    169166 4v6p:BL (13.5) BS01 rna ? GO:0002181 ... P0AA10 22467828
    169167 4v6p:BM (13.5) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    169168 4v6p:BM (13.5) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    169169 4v6p:BN (13.5) BS01 rna ? GO:0002181 ... P02413 22467828
    169170 4v6p:BO (13.5) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    169171 4v6p:BO (13.5) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    169172 4v6p:BP (13.5) BS01 rna ? GO:0000027 ... P0AG44 22467828
    169173 4v6p:BQ (13.5) BS01 rna ? GO:0002181 ... P0C018 22467828
    169174 4v6p:BQ (13.5) BS02 rna ? GO:0002181 ... P0C018 22467828
    169175 4v6p:BR (13.5) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    169176 4v6p:BR (13.5) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    169177 4v6p:BS (13.5) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    169178 4v6p:BT (13.5) BS01 rna ? GO:0002181 ... P0AG48 22467828
    169179 4v6p:BU (13.5) BS01 rna ? GO:0002181 ... P61175 22467828
    169180 4v6p:BV (13.5) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    169181 4v6p:BW (13.5) BS01 rna ? GO:0000027 ... P60624 22467828
    169182 4v6p:BX (13.5) BS01 rna ? GO:0000027 ... P68919 22467828
    169183 4v6p:BX (13.5) BS02 rna ? GO:0000027 ... P68919 22467828
    169184 4v6p:BY (13.5) BS01 rna ? GO:0000027 ... P0A7L8 22467828
    169185 4v6p:BY (13.5) BS02 rna ? GO:0000027 ... P0A7L8 22467828
    169186 4v6p:BZ (13.5) BS01 rna ? GO:0000027 ... P0A7M2 22467828
    169187 4v6q:AE (11.5) BS01 rna ? GO:0000028 ... P0A7V0 22467828
    169188 4v6q:AF (11.5) BS01 rna ? GO:0000028 ... P0A7V3 22467828
    169189 4v6q:AF (11.5) BS02 rna ? GO:0000028 ... P0A7V3 22467828
    169190 4v6q:AG (11.5) BS01 rna ? GO:0000028 ... P0A7V8 22467828
    169191 4v6q:AG (11.5) BS02 rna ? GO:0000028 ... P0A7V8 22467828
    169192 4v6q:AH (11.5) BS01 rna ? GO:0000028 ... P0A7W1 22467828
    169193 4v6q:AH (11.5) BS02 rna ? GO:0000028 ... P0A7W1 22467828
    169194 4v6q:AI (11.5) BS01 rna ? GO:0002181 ... P02358 22467828
    169195 4v6q:AI (11.5) BS02 rna ? GO:0002181 ... P02358 22467828
    169196 4v6q:AJ (11.5) BS01 rna ? GO:0000028 ... P02359 22467828
    169197 4v6q:AJ (11.5) BS02 rna ? GO:0000028 ... P02359 22467828
    169198 4v6q:AK (11.5) BS01 rna ? GO:0000028 ... P0A7W7 22467828
    169199 4v6q:AL (11.5) BS01 rna ? GO:0000049 ... P0A7X3 22467828
    169200 4v6q:AM (11.5) BS01 rna ? GO:0000049 ... P0A7R5 22467828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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