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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168801 4v6k:BH (8.25) BS01 rna ? GO:0000028 ... P0A7V8 21378755
    168802 4v6k:BI (8.25) BS01 rna ? GO:0000028 ... P0A7W1 21378755
    168803 4v6k:BI (8.25) BS02 rna ? GO:0000028 ... P0A7W1 21378755
    168804 4v6k:BJ (8.25) BS01 rna ? GO:0002181 ... P02358 21378755
    168805 4v6k:BK (8.25) BS01 rna ? GO:0000028 ... P02359 21378755
    168806 4v6k:BK (8.25) BS02 rna ? GO:0000028 ... P02359 21378755
    168807 4v6k:BL (8.25) BS01 rna ? GO:0000028 ... P0A7W7 21378755
    168808 4v6k:BM (8.25) BS01 rna ? GO:0000049 ... P0A7X3 21378755
    168809 4v6k:BN (8.25) BS01 rna ? GO:0000049 ... P0A7R5 21378755
    168810 4v6k:BO (8.25) BS01 rna ? GO:0002181 ... P0A7R9 21378755
    168811 4v6k:BO (8.25) BS02 rna ? GO:0002181 ... P0A7R9 21378755
    168812 4v6k:BP (8.25) BS01 rna ? GO:0000049 ... P0A7S3 21378755
    168813 4v6k:BP (8.25) BS02 rna ? GO:0000049 ... P0A7S3 21378755
    168814 4v6k:BQ (8.25) BS01 rna ? GO:0000049 ... P0A7S9 21378755
    168815 4v6k:BQ (8.25) BS02 rna ? GO:0000049 ... P0A7S9 21378755
    168816 4v6k:BR (8.25) BS01 rna ? GO:0000028 ... P0AG59 21378755
    168817 4v6k:BS (8.25) BS01 rna ? GO:0003735 ... Q8X9M2 21378755
    168818 4v6k:BS (8.25) BS02 rna ? GO:0003735 ... Q8X9M2 21378755
    168819 4v6k:BT (8.25) BS01 rna ? GO:0000028 ... P0A7T3 21378755
    168820 4v6k:BU (8.25) BS01 rna ? GO:0000028 ... P0AG63 21378755
    168821 4v6k:BV (8.25) BS01 rna ? GO:0002181 ... P0A7T7 21378755
    168822 4v6k:BW (8.25) BS01 rna ? GO:0000028 ... P0A7U3 21378755
    168823 4v6k:BW (8.25) BS02 rna ? GO:0000028 ... P0A7U3 21378755
    168824 4v6k:BX (8.25) BS01 rna ? GO:0000028 ... P0A7U7 21378755
    168825 4v6k:BY (8.25) BS01 rna ? GO:0000028 ... P68679 21378755
    168826 4v6k:BY (8.25) BS02 rna ? GO:0000028 ... P68679 21378755
    168827 4v6l:AC (13.2) BS01 rna ? GO:0003723 ... P0CE48 21378755
    168828 4v6l:AC (13.2) BS02 rna ? GO:0003723 ... P0CE48 21378755
    168829 4v6l:AC (13.2) BS03 rna ? GO:0003723 ... P0CE48 21378755
    168830 4v6l:AF (13.2) BS01 rna ? GO:0000028 ... P0A7V0 21378755
    168831 4v6l:AG (13.2) BS01 rna ? GO:0000028 ... P0A7V3 21378755
    168832 4v6l:AG (13.2) BS02 rna ? GO:0000028 ... P0A7V3 21378755
    168833 4v6l:AH (13.2) BS01 rna ? GO:0000028 ... P0A7V8 21378755
    168834 4v6l:AI (13.2) BS01 rna ? GO:0000028 ... P0A7W1 21378755
    168835 4v6l:AI (13.2) BS02 rna ? GO:0000028 ... P0A7W1 21378755
    168836 4v6l:AJ (13.2) BS01 rna ? GO:0002181 ... P02358 21378755
    168837 4v6l:AK (13.2) BS01 rna ? GO:0000028 ... P02359 21378755
    168838 4v6l:AK (13.2) BS02 rna ? GO:0000028 ... P02359 21378755
    168839 4v6l:AL (13.2) BS01 rna ? GO:0000028 ... P0A7W7 21378755
    168840 4v6l:AM (13.2) BS01 rna ? GO:0000049 ... P0A7X3 21378755
    168841 4v6l:AM (13.2) BS02 rna ? GO:0000049 ... P0A7X3 21378755
    168842 4v6l:AN (13.2) BS01 rna ? GO:0000049 ... P0A7R5 21378755
    168843 4v6l:AO (13.2) BS01 rna ? GO:0002181 ... P0A7R9 21378755
    168844 4v6l:AO (13.2) BS02 rna ? GO:0002181 ... P0A7R9 21378755
    168845 4v6l:AP (13.2) BS01 rna ? GO:0000049 ... P0A7S3 21378755
    168846 4v6l:AP (13.2) BS02 rna ? GO:0000049 ... P0A7S3 21378755
    168847 4v6l:AQ (13.2) BS01 rna ? GO:0000049 ... P0A7S9 21378755
    168848 4v6l:AQ (13.2) BS02 rna ? GO:0000049 ... P0A7S9 21378755
    168849 4v6l:AR (13.2) BS01 rna ? GO:0000028 ... P0AG59 21378755
    168850 4v6l:AS (13.2) BS01 rna ? GO:0003735 ... Q8X9M2 21378755
    168851 4v6l:AS (13.2) BS02 rna ? GO:0003735 ... Q8X9M2 21378755
    168852 4v6l:AT (13.2) BS01 rna ? GO:0000028 ... P0A7T3 21378755
    168853 4v6l:AU (13.2) BS01 rna ? GO:0000028 ... P0AG63 21378755
    168854 4v6l:AV (13.2) BS01 rna ? GO:0002181 ... P0A7T7 21378755
    168855 4v6l:AW (13.2) BS01 rna ? GO:0000028 ... P0A7U3 21378755
    168856 4v6l:AX (13.2) BS01 rna ? GO:0000028 ... P0A7U7 21378755
    168857 4v6l:AY (13.2) BS01 rna ? GO:0000028 ... P68679 21378755
    168858 4v6l:AY (13.2) BS02 rna ? GO:0000028 ... P68679 21378755
    168859 4v6l:BC (13.2) BS01 rna ? GO:0000027 ... P0A7L0 21378755
    168860 4v6l:BD (13.2) BS01 rna ? GO:0000027 ... P60422 21378755
    168861 4v6l:BE (13.2) BS01 rna ? GO:0000027 ... P60438 21378755
    168862 4v6l:BF (13.2) BS01 rna ? GO:0001070 ... P60723 21378755
    168863 4v6l:BG (13.2) BS01 rna ? GO:0000027 ... P62399 21378755
    168864 4v6l:BG (13.2) BS02 rna ? GO:0000027 ... P62399 21378755
    168865 4v6l:BG (13.2) BS03 rna ? GO:0000027 ... P62399 21378755
    168866 4v6l:BH (13.2) BS01 rna ? GO:0000027 ... P0AG55 21378755
    168867 4v6l:BI (13.2) BS01 rna ? GO:0002181 ... P0A7R1 21378755
    168868 4v6l:BJ (13.2) BS01 rna ? GO:0000027 ... P0A7J7 21378755
    168869 4v6l:BK (13.2) BS01 rna ? GO:0002181 ... P0AA10 21378755
    168870 4v6l:BL (13.2) BS01 rna ? GO:0002181 ... P0ADY3 21378755
    168871 4v6l:BL (13.2) BS02 rna ? GO:0002181 ... P0ADY3 21378755
    168872 4v6l:BM (13.2) BS01 rna ? GO:0002181 ... P02413 21378755
    168873 4v6l:BN (13.2) BS01 rna ? GO:0000027 ... P0ADY7 21378755
    168874 4v6l:BN (13.2) BS02 rna ? GO:0000027 ... P0ADY7 21378755
    168875 4v6l:BO (13.2) BS01 rna ? GO:0000027 ... P0AG44 21378755
    168876 4v6l:BP (13.2) BS01 rna ? GO:0002181 ... P0C018 21378755
    168877 4v6l:BP (13.2) BS02 rna ? GO:0002181 ... P0C018 21378755
    168878 4v6l:BQ (13.2) BS01 rna ? GO:0000027 ... P0A7K6 21378755
    168879 4v6l:BQ (13.2) BS02 rna ? GO:0000027 ... P0A7K6 21378755
    168880 4v6l:BR (13.2) BS01 rna ? GO:0000027 ... P0A7L3 21378755
    168881 4v6l:BS (13.2) BS01 rna ? GO:0002181 ... P0AG48 21378755
    168882 4v6l:BT (13.2) BS01 rna ? GO:0002181 ... P61175 21378755
    168883 4v6l:BU (13.2) BS01 rna ? GO:0000027 ... P0ADZ0 21378755
    168884 4v6l:BV (13.2) BS01 rna ? GO:0000027 ... P60624 21378755
    168885 4v6l:BW (13.2) BS01 rna ? GO:0000027 ... P68919 21378755
    168886 4v6l:BX (13.2) BS01 rna ? GO:0000027 ... P0A7L8 21378755
    168887 4v6l:BX (13.2) BS02 rna ? GO:0000027 ... P0A7L8 21378755
    168888 4v6l:BY (13.2) BS01 rna ? GO:0000027 ... P0A7M2 21378755
    168889 4v6l:BZ (13.2) BS01 rna ? GO:0000027 ... P0A7M6 21378755
    168890 4v6l:Ba (13.2) BS01 rna ? GO:0000027 ... P0AG51 21378755
    168891 4v6l:Ba (13.2) BS02 rna ? GO:0000027 ... P0AG51 21378755
    168892 4v6l:Bb (13.2) BS01 rna ? GO:0002181 ... P0A7M9 21378755
    168893 4v6l:Bb (13.2) BS02 rna ? GO:0002181 ... P0A7M9 21378755
    168894 4v6l:Bc (13.2) BS01 rna ? GO:0000027 ... P0A7N4 21378755
    168895 4v6l:Bd (13.2) BS01 rna ? GO:0000027 ... P0A7N9 21378755
    168896 4v6l:Be (13.2) BS01 rna ? GO:0002181 ... P0A7P5 21378755
    168897 4v6l:Bf (13.2) BS01 rna ? GO:0002181 ... P0A7Q1 21378755
    168898 4v6l:Bg (13.2) BS01 rna N/A GO:0003735 ... N/A 21378755
    168899 4v6m:AB (7.1) BS01 rna ? GO:0000028 ... P0A7V0 21499241
    168900 4v6m:AC (7.1) BS01 rna ? GO:0000028 ... P0A7V3 21499241
    168901 4v6m:AD (7.1) BS01 rna ? GO:0000028 ... P0A7V8 21499241
    168902 4v6m:AE (7.1) BS01 rna ? GO:0000028 ... P0A7W1 21499241
    168903 4v6m:AF (7.1) BS01 rna ? GO:0002181 ... P02358 21499241
    168904 4v6m:AG (7.1) BS01 rna ? GO:0000028 ... P02359 21499241
    168905 4v6m:AG (7.1) BS02 rna ? GO:0000028 ... P02359 21499241
    168906 4v6m:AH (7.1) BS01 rna ? GO:0000028 ... P0A7W7 21499241
    168907 4v6m:AI (7.1) BS01 rna ? GO:0000049 ... P0A7X3 21499241
    168908 4v6m:AJ (7.1) BS01 rna ? GO:0000049 ... P0A7R5 21499241
    168909 4v6m:AK (7.1) BS01 rna ? GO:0002181 ... P0A7R9 21499241
    168910 4v6m:AL (7.1) BS01 rna ? GO:0000049 ... P0A7S3 21499241
    168911 4v6m:AM (7.1) BS01 rna ? GO:0003676 ... P0ADZ4 21499241
    168912 4v6m:AM (7.1) BS02 rna ? GO:0003676 ... P0ADZ4 21499241
    168913 4v6m:AN (7.1) BS01 rna ? GO:0000028 ... P0AG59 21499241
    168914 4v6m:AO (7.1) BS01 rna N/A GO:0003735 ... N/A 21499241
    168915 4v6m:AO (7.1) BS02 rna N/A GO:0003735 ... N/A 21499241
    168916 4v6m:AP (7.1) BS01 rna ? GO:0000028 ... P0A7T3 21499241
    168917 4v6m:AQ (7.1) BS01 rna ? GO:0000028 ... P0AG63 21499241
    168918 4v6m:AR (7.1) BS01 rna ? GO:0002181 ... P0A7T7 21499241
    168919 4v6m:AS (7.1) BS01 rna ? GO:0000028 ... P0A7U3 21499241
    168920 4v6m:AS (7.1) BS02 rna ? GO:0000028 ... P0A7U3 21499241
    168921 4v6m:AT (7.1) BS01 rna ? GO:0000028 ... P0A7U7 21499241
    168922 4v6m:AU (7.1) BS01 rna ? GO:0000028 ... P68679 21499241
    168923 4v6m:B0 (7.1) BS01 rna ? GO:0000027 ... P0A7N4 21499241
    168924 4v6m:B1 (7.1) BS01 rna ? GO:0000027 ... P0A7N9 21499241
    168925 4v6m:B2 (7.1) BS01 rna ? GO:0002181 ... P0A7P5 21499241
    168926 4v6m:B3 (7.1) BS01 rna ? GO:0002181 ... P0A7Q1 21499241
    168927 4v6m:B4 (7.1) BS01 rna ? GO:0002181 ... P0A7Q6 21499241
    168928 4v6m:B5 (7.1) BS01 rna ? GO:0000027 ... P0A7L0 21499241
    168929 4v6m:B6 (7.1) BS01 rna ? GO:0000027 ... P60422 21499241
    168930 4v6m:B6 (7.1) BS02 rna ? GO:0000027 ... P60422 21499241
    168931 4v6m:BA (7.1) BS01 rna N/A GO:0015031 ... N/A 21499241
    168932 4v6m:BD (7.1) BS01 rna ? GO:0000027 ... P60438 21499241
    168933 4v6m:BE (7.1) BS01 rna ? GO:0001070 ... P60723 21499241
    168934 4v6m:BF (7.1) BS01 rna ? GO:0000027 ... P62399 21499241
    168935 4v6m:BF (7.1) BS02 rna ? GO:0000027 ... P62399 21499241
    168936 4v6m:BF (7.1) BS03 rna ? GO:0000027 ... P62399 21499241
    168937 4v6m:BG (7.1) BS01 rna ? GO:0000027 ... P0AG55 21499241
    168938 4v6m:BH (7.1) BS01 rna ? GO:0002181 ... P0A7R1 21499241
    168939 4v6m:BI (7.1) BS01 rna ? GO:0000027 ... P0A7J7 21499241
    168940 4v6m:BJ (7.1) BS01 rna ? GO:0002181 ... P0AA10 21499241
    168941 4v6m:BK (7.1) BS01 rna ? GO:0002181 ... P0ADY3 21499241
    168942 4v6m:BK (7.1) BS02 rna ? GO:0002181 ... P0ADY3 21499241
    168943 4v6m:BL (7.1) BS01 rna ? GO:0002181 ... P02413 21499241
    168944 4v6m:BM (7.1) BS01 rna ? GO:0000027 ... P0ADY7 21499241
    168945 4v6m:BM (7.1) BS02 rna ? GO:0000027 ... P0ADY7 21499241
    168946 4v6m:BN (7.1) BS01 rna ? GO:0000027 ... P0AG44 21499241
    168947 4v6m:BO (7.1) BS01 rna ? GO:0002181 ... P0C018 21499241
    168948 4v6m:BO (7.1) BS02 rna ? GO:0002181 ... P0C018 21499241
    168949 4v6m:BP (7.1) BS01 rna ? GO:0000027 ... P0A7K6 21499241
    168950 4v6m:BP (7.1) BS02 rna ? GO:0000027 ... P0A7K6 21499241
    168951 4v6m:BQ (7.1) BS01 rna ? GO:0000027 ... P0A7L3 21499241
    168952 4v6m:BR (7.1) BS01 rna ? GO:0002181 ... P0AG48 21499241
    168953 4v6m:BS (7.1) BS01 rna ? GO:0002181 ... P61175 21499241
    168954 4v6m:BT (7.1) BS01 rna ? GO:0000027 ... P0ADZ0 21499241
    168955 4v6m:BU (7.1) BS01 rna ? GO:0000027 ... P60624 21499241
    168956 4v6m:BV (7.1) BS01 rna ? GO:0000027 ... P68919 21499241
    168957 4v6m:BW (7.1) BS01 rna ? GO:0000027 ... P0A7L8 21499241
    168958 4v6m:BW (7.1) BS02 rna ? GO:0000027 ... P0A7L8 21499241
    168959 4v6m:BW (7.1) BS03 rna ? GO:0000027 ... P0A7L8 21499241
    168960 4v6m:BX (7.1) BS01 rna ? GO:0000027 ... P0A7M2 21499241
    168961 4v6m:BY (7.1) BS01 rna ? GO:0000027 ... P0A7M6 21499241
    168962 4v6m:BZ (7.1) BS01 rna ? GO:0000027 ... P0AG51 21499241
    168963 4v6m:BZ (7.1) BS02 rna ? GO:0000027 ... P0AG51 21499241
    168964 4v6n:A0 (12.1) BS01 rna ? GO:0000027 ... P0A7M6 22467828
    168965 4v6n:A1 (12.1) BS01 rna ? GO:0000027 ... P0AG51 22467828
    168966 4v6n:A1 (12.1) BS02 rna ? GO:0000027 ... P0AG51 22467828
    168967 4v6n:A2 (12.1) BS01 rna ? GO:0002181 ... P0A7M9 22467828
    168968 4v6n:A2 (12.1) BS02 rna ? GO:0002181 ... P0A7M9 22467828
    168969 4v6n:A3 (12.1) BS01 rna ? GO:0000027 ... P0A7N4 22467828
    168970 4v6n:A4 (12.1) BS01 rna ? GO:0000027 ... P0A7N9 22467828
    168971 4v6n:A5 (12.1) BS01 rna ? GO:0002181 ... P0A7P5 22467828
    168972 4v6n:A6 (12.1) BS01 rna ? GO:0002181 ... P0A7Q1 22467828
    168973 4v6n:A7 (12.1) BS01 rna ? GO:0002181 ... P0A7Q6 22467828
    168974 4v6n:AC (12.1) BS01 rna ? GO:0000027 ... P0A7L0 22467828
    168975 4v6n:AD (12.1) BS01 rna ? GO:0000027 ... P60422 22467828
    168976 4v6n:AE (12.1) BS01 rna ? GO:0000027 ... P60438 22467828
    168977 4v6n:AF (12.1) BS01 rna ? GO:0001070 ... P60723 22467828
    168978 4v6n:AG (12.1) BS01 rna ? GO:0000027 ... P62399 22467828
    168979 4v6n:AG (12.1) BS02 rna ? GO:0000027 ... P62399 22467828
    168980 4v6n:AH (12.1) BS01 rna ? GO:0000027 ... P0AG55 22467828
    168981 4v6n:AI (12.1) BS01 rna ? GO:0002181 ... P0A7R1 22467828
    168982 4v6n:AJ (12.1) BS01 rna ? GO:0002181 ... P0A7J3 22467828
    168983 4v6n:AK (12.1) BS01 rna ? GO:0000027 ... P0A7J7 22467828
    168984 4v6n:AL (12.1) BS01 rna ? GO:0002181 ... P0AA10 22467828
    168985 4v6n:AM (12.1) BS01 rna ? GO:0002181 ... P0ADY3 22467828
    168986 4v6n:AM (12.1) BS02 rna ? GO:0002181 ... P0ADY3 22467828
    168987 4v6n:AN (12.1) BS01 rna ? GO:0002181 ... P02413 22467828
    168988 4v6n:AO (12.1) BS01 rna ? GO:0000027 ... P0ADY7 22467828
    168989 4v6n:AO (12.1) BS02 rna ? GO:0000027 ... P0ADY7 22467828
    168990 4v6n:AO (12.1) BS03 rna ? GO:0000027 ... P0ADY7 22467828
    168991 4v6n:AP (12.1) BS01 rna ? GO:0000027 ... P0AG44 22467828
    168992 4v6n:AQ (12.1) BS01 rna ? GO:0002181 ... P0C018 22467828
    168993 4v6n:AQ (12.1) BS02 rna ? GO:0002181 ... P0C018 22467828
    168994 4v6n:AR (12.1) BS01 rna ? GO:0000027 ... P0A7K6 22467828
    168995 4v6n:AR (12.1) BS02 rna ? GO:0000027 ... P0A7K6 22467828
    168996 4v6n:AS (12.1) BS01 rna ? GO:0000027 ... P0A7L3 22467828
    168997 4v6n:AT (12.1) BS01 rna ? GO:0002181 ... P0AG48 22467828
    168998 4v6n:AU (12.1) BS01 rna ? GO:0002181 ... P61175 22467828
    168999 4v6n:AV (12.1) BS01 rna ? GO:0000027 ... P0ADZ0 22467828
    169000 4v6n:AW (12.1) BS01 rna ? GO:0000027 ... P60624 22467828
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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