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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168601 4v6g:CP (3.5) BS04 MG ? GO:0000049 ... P80377 20400952
    168602 4v6g:CP (3.5) BS05 MG ? GO:0000049 ... P80377 20400952
    168603 4v6g:CQ (3.5) BS01 rna ? GO:0003735 ... P0DOY6 20400952
    168604 4v6g:CQ (3.5) BS02 MG ? GO:0003735 ... P0DOY6 20400952
    168605 4v6g:CQ (3.5) BS03 ZN ? GO:0003735 ... P0DOY6 20400952
    168606 4v6g:CR (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 20400952
    168607 4v6g:CR (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 20400952
    168608 4v6g:CS (3.5) BS01 rna N/A GO:0003735 ... N/A 20400952
    168609 4v6g:CT (3.5) BS01 rna ? GO:0003735 ... P0DOY7 20400952
    168610 4v6g:CU (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 20400952
    168611 4v6g:CV (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 20400952
    168612 4v6g:CW (3.5) BS01 rna ? GO:0003723 ... P80380 20400952
    168613 4v6g:CW (3.5) BS02 MG ? GO:0003723 ... P80380 20400952
    168614 4v6g:CW (3.5) BS03 MG ? GO:0003723 ... P80380 20400952
    168615 4v6g:D0 (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 20400952
    168616 4v6g:D0 (3.5) BS02 MG ? GO:0003735 ... Q9Z9H5 20400952
    168617 4v6g:D1 (3.5) BS01 rna ? GO:0000027 ... P60491 20400952
    168618 4v6g:D1 (3.5) BS02 MG ? GO:0000027 ... P60491 20400952
    168619 4v6g:D1 (3.5) BS03 MG ? GO:0000027 ... P60491 20400952
    168620 4v6g:D2 (3.5) BS01 rna ? GO:0003723 ... P60492 20400952
    168621 4v6g:D2 (3.5) BS02 MG ? GO:0003723 ... P60492 20400952
    168622 4v6g:D3 (3.5) BS01 rna ? GO:0003735 ... P60493 20400952
    168623 4v6g:D3 (3.5) BS02 rna ? GO:0003735 ... P60493 20400952
    168624 4v6g:D3 (3.5) BS03 MG ? GO:0003735 ... P60493 20400952
    168625 4v6g:D4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 20400952
    168626 4v6g:D4 (3.5) BS02 rna ? GO:0003735 ... Q5SJE1 20400952
    168627 4v6g:D5 (3.5) BS01 rna ? GO:0003735 ... P80339 20400952
    168628 4v6g:D6 (3.5) BS01 rna ? GO:0000049 ... P35871 20400952
    168629 4v6g:D6 (3.5) BS02 MG ? GO:0000049 ... P35871 20400952
    168630 4v6g:D7 (3.5) BS01 rna ? GO:0003735 ... P80340 20400952
    168631 4v6g:D8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 20400952
    168632 4v6g:DD (3.5) BS01 rna ? GO:0002181 ... P60405 20400952
    168633 4v6g:DD (3.5) BS02 MG ? GO:0002181 ... P60405 20400952
    168634 4v6g:DE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 20400952
    168635 4v6g:DF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 20400952
    168636 4v6g:DG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 20400952
    168637 4v6g:DG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 20400952
    168638 4v6g:DG (3.5) BS03 rna ? GO:0000049 ... Q5SHQ0 20400952
    168639 4v6g:DG (3.5) BS04 MG ? GO:0000049 ... Q5SHQ0 20400952
    168640 4v6g:DG (3.5) BS05 MG ? GO:0000049 ... Q5SHQ0 20400952
    168641 4v6g:DH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 20400952
    168642 4v6g:DH (3.5) BS02 MG ? GO:0002181 ... P0DOY8 20400952
    168643 4v6g:DH (3.5) BS03 MG ? GO:0002181 ... P0DOY8 20400952
    168644 4v6g:DK (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 20400952
    168645 4v6g:DM (3.5) BS01 rna ? GO:0003729 ... P60488 20400952
    168646 4v6g:DN (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 20400952
    168647 4v6g:DN (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 20400952
    168648 4v6g:DO (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 20400952
    168649 4v6g:DO (3.5) BS02 MG ? GO:0003735 ... Q5SHQ7 20400952
    168650 4v6g:DP (3.5) BS01 rna ? GO:0000049 ... P60489 20400952
    168651 4v6g:DP (3.5) BS02 rna ? GO:0000049 ... P60489 20400952
    168652 4v6g:DP (3.5) BS03 rna ? GO:0000049 ... P60489 20400952
    168653 4v6g:DP (3.5) BS04 MG ? GO:0000049 ... P60489 20400952
    168654 4v6g:DQ (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 20400952
    168655 4v6g:DQ (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 20400952
    168656 4v6g:DR (3.5) BS01 rna ? GO:0003735 ... P60490 20400952
    168657 4v6g:DR (3.5) BS02 rna ? GO:0003735 ... P60490 20400952
    168658 4v6g:DS (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 20400952
    168659 4v6g:DT (3.5) BS01 rna ? GO:0000027 ... Q5SHP0 20400952
    168660 4v6g:DU (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 20400952
    168661 4v6g:DU (3.5) BS02 MG ? GO:0003723 ... Q5SHP9 20400952
    168662 4v6g:DV (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 20400952
    168663 4v6g:DW (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 20400952
    168664 4v6g:DW (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 20400952
    168665 4v6g:DX (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 20400952
    168666 4v6g:DX (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 20400952
    168667 4v6g:DZ (3.5) BS01 rna ? GO:0003735 ... P60494 20400952
    168668 4v6g:DZ (3.5) BS02 MG ? GO:0003735 ... P60494 20400952
    168669 4v6i:AA (8.8) BS01 rna ? GO:0000028 ... P32905 20980660
    168670 4v6i:AB (8.8) BS01 rna ? GO:0000054 ... P05750 20980660
    168671 4v6i:AC (8.8) BS01 rna ? GO:0000462 ... O13516 20980660
    168672 4v6i:AD (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    168673 4v6i:AE (8.8) BS01 rna ? GO:0000054 ... P25443 20980660
    168674 4v6i:AF (8.8) BS01 rna ? GO:0000028 ... P26783 20980660
    168675 4v6i:AH (8.8) BS01 rna ? GO:0002181 ... P0C0W1 20980660
    168676 4v6i:AI (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168677 4v6i:AJ (8.8) BS01 rna ? GO:0000462 ... P38701 20980660
    168678 4v6i:AK (8.8) BS01 rna ? GO:0000028 ... P06367 20980660
    168679 4v6i:AL (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168680 4v6i:AM (8.8) BS01 rna N/A GO:0003676 ... N/A 20980660
    168681 4v6i:AN (8.8) BS01 rna ? GO:0002181 ... P41057 20980660
    168682 4v6i:AO (8.8) BS01 rna ? GO:0000462 ... P05756 20980660
    168683 4v6i:AO (8.8) BS02 rna ? GO:0000462 ... P05756 20980660
    168684 4v6i:AP (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168685 4v6i:AQ (8.8) BS01 rna ? GO:0000028 ... P02407 20980660
    168686 4v6i:AR (8.8) BS01 rna ? GO:0000028 ... Q01855 20980660
    168687 4v6i:AS (8.8) BS01 rna ? GO:0000028 ... P07280 20980660
    168688 4v6i:AT (8.8) BS01 rna ? GO:0000447 ... P0C0V8 20980660
    168689 4v6i:AU (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168690 4v6i:AV (8.8) BS01 rna ? GO:0002181 ... Q3E792 20980660
    168691 4v6i:AX (8.8) BS01 rna ? GO:0000028 ... P35997 20980660
    168692 4v6i:AZ (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168693 4v6i:Aa (8.8) BS01 rna ? GO:0001965 ... P38011 20980660
    168694 4v6i:BA (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    168695 4v6i:BB (8.8) BS01 peptide N/A GO:0003735 ... N/A 20980660
    168696 4v6i:BB (8.8) BS02 rna N/A GO:0003735 ... N/A 20980660
    168697 4v6i:BC (8.8) BS01 rna ? GO:0000027 ... P14126 20980660
    168698 4v6i:BD (8.8) BS01 rna ? GO:0002181 ... P10664 20980660
    168699 4v6i:BD (8.8) BS02 rna ? GO:0002181 ... P10664 20980660
    168700 4v6i:BE (8.8) BS01 rna ? GO:0000027 ... P0C0W9 20980660
    168701 4v6i:BE (8.8) BS02 rna ? GO:0000027 ... P0C0W9 20980660
    168702 4v6i:BE (8.8) BS03 rna ? GO:0000027 ... P0C0W9 20980660
    168703 4v6i:BF (8.8) BS01 rna ? GO:0002181 ... P05738 20980660
    168704 4v6i:BG (8.8) BS01 rna ? GO:0000027 ... Q02326 20980660
    168705 4v6i:BH (8.8) BS01 peptide ? GO:0000470 ... P17076 20980660
    168706 4v6i:BH (8.8) BS02 rna ? GO:0000470 ... P17076 20980660
    168707 4v6i:BH (8.8) BS03 rna ? GO:0000470 ... P17076 20980660
    168708 4v6i:BI (8.8) BS01 rna ? GO:0000027 ... P41805 20980660
    168709 4v6i:BI (8.8) BS02 rna ? GO:0000027 ... P41805 20980660
    168710 4v6i:BI (8.8) BS03 rna ? GO:0000027 ... P41805 20980660
    168711 4v6i:BJ (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168712 4v6i:BK (8.8) BS01 rna ? GO:0000470 ... P26784 20980660
    168713 4v6i:BM (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168714 4v6i:BM (8.8) BS02 rna N/A GO:0003735 ... N/A 20980660
    168715 4v6i:BN (8.8) BS01 rna ? GO:0000027 ... P36105 20980660
    168716 4v6i:BO (8.8) BS01 rna ? GO:0002181 ... P02406 20980660
    168717 4v6i:BP (8.8) BS01 rna ? GO:0002181 ... P05748 20980660
    168718 4v6i:BP (8.8) BS02 rna ? GO:0002181 ... P05748 20980660
    168719 4v6i:BQ (8.8) BS01 rna ? GO:0000027 ... P26321 20980660
    168720 4v6i:BQ (8.8) BS02 rna ? GO:0000027 ... P26321 20980660
    168721 4v6i:BR (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168722 4v6i:BS (8.8) BS01 rna ? GO:0003735 ... Q943F3 20980660
    168723 4v6i:BS (8.8) BS02 rna ? GO:0003735 ... Q943F3 20980660
    168724 4v6i:BT (8.8) BS01 rna N/A GO:0003723 ... N/A 20980660
    168725 4v6i:BT (8.8) BS02 rna N/A GO:0003723 ... N/A 20980660
    168726 4v6i:BU (8.8) BS01 rna ? GO:0002181 ... Q02753 20980660
    168727 4v6i:BU (8.8) BS02 rna ? GO:0002181 ... Q02753 20980660
    168728 4v6i:BV (8.8) BS01 rna ? GO:0000448 ... P05740 20980660
    168729 4v6i:BV (8.8) BS02 rna ? GO:0000448 ... P05740 20980660
    168730 4v6i:BW (8.8) BS01 rna ? GO:0002181 ... P05749 20980660
    168731 4v6i:BX (8.8) BS01 rna ? GO:0000027 ... P04456 20980660
    168732 4v6i:BX (8.8) BS02 rna ? GO:0000027 ... P04456 20980660
    168733 4v6i:BY (8.8) BS01 rna ? GO:0002181 ... P05743 20980660
    168734 4v6i:BY (8.8) BS02 rna ? GO:0002181 ... P05743 20980660
    168735 4v6i:BZ (8.8) BS01 rna ? GO:0002181 ... P04449 20980660
    168736 4v6i:Ba (8.8) BS01 rna ? GO:0002181 ... P0C2H6 20980660
    168737 4v6i:Bc (8.8) BS01 rna N/A GO:0000463 ... N/A 20980660
    168738 4v6i:Bc (8.8) BS02 rna N/A GO:0000463 ... N/A 20980660
    168739 4v6i:Be (8.8) BS01 rna ? GO:0000463 ... P05737 20980660
    168740 4v6i:Be (8.8) BS02 rna ? GO:0000463 ... P05737 20980660
    168741 4v6i:Bf (8.8) BS01 rna ? GO:0002181 ... P14120 20980660
    168742 4v6i:Bg (8.8) BS01 rna ? GO:0002181 ... P0C2H8 20980660
    168743 4v6i:Bh (8.8) BS01 rna ? GO:0002181 ... P38061 20980660
    168744 4v6i:Bi (8.8) BS01 rna ? GO:0002181 ... P87262 20980660
    168745 4v6i:Bj (8.8) BS01 rna ? GO:0000027 ... P05744 20980660
    168746 4v6i:Bk (8.8) BS01 rna ? GO:0002181 ... P05745 20980660
    168747 4v6i:Bl (8.8) BS01 rna ? GO:0000448 ... P49166 20980660
    168748 4v6i:Bl (8.8) BS02 rna ? GO:0000448 ... P49166 20980660
    168749 4v6i:Bm (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168750 4v6i:Bn (8.8) BS01 rna ? GO:0002181 ... P49167 20980660
    168751 4v6i:Bo (8.8) BS01 rna ? GO:0002181 ... P04650 20980660
    168752 4v6i:Bo (8.8) BS02 rna ? GO:0002181 ... P04650 20980660
    168753 4v6i:Bp (8.8) BS01 rna ? GO:0003735 ... P0CH08 20980660
    168754 4v6i:Br (8.8) BS01 rna N/A GO:0003735 ... N/A 20980660
    168755 4v6i:Bs (8.8) BS01 rna ? GO:0000027 ... P05317 20980660
    168756 4v6k:AC (8.25) BS01 rna ? GO:0000027 ... P0A7L0 21378755
    168757 4v6k:AD (8.25) BS01 rna ? GO:0000027 ... P60422 21378755
    168758 4v6k:AE (8.25) BS01 rna ? GO:0000027 ... P60438 21378755
    168759 4v6k:AF (8.25) BS01 rna ? GO:0001070 ... P60723 21378755
    168760 4v6k:AG (8.25) BS01 rna ? GO:0000027 ... P62399 21378755
    168761 4v6k:AG (8.25) BS02 rna ? GO:0000027 ... P62399 21378755
    168762 4v6k:AH (8.25) BS01 rna ? GO:0000027 ... P0AG55 21378755
    168763 4v6k:AI (8.25) BS01 rna ? GO:0002181 ... P0A7R1 21378755
    168764 4v6k:AJ (8.25) BS01 rna ? GO:0000027 ... P0A7J7 21378755
    168765 4v6k:AK (8.25) BS01 rna ? GO:0002181 ... P0AA10 21378755
    168766 4v6k:AL (8.25) BS01 rna ? GO:0002181 ... P0ADY3 21378755
    168767 4v6k:AL (8.25) BS02 rna ? GO:0002181 ... P0ADY3 21378755
    168768 4v6k:AM (8.25) BS01 rna ? GO:0002181 ... P02413 21378755
    168769 4v6k:AN (8.25) BS01 rna ? GO:0000027 ... P0ADY7 21378755
    168770 4v6k:AN (8.25) BS02 rna ? GO:0000027 ... P0ADY7 21378755
    168771 4v6k:AO (8.25) BS01 rna ? GO:0000027 ... P0AG44 21378755
    168772 4v6k:AP (8.25) BS01 rna ? GO:0002181 ... P0C018 21378755
    168773 4v6k:AP (8.25) BS02 rna ? GO:0002181 ... P0C018 21378755
    168774 4v6k:AQ (8.25) BS01 rna ? GO:0000027 ... P0A7K6 21378755
    168775 4v6k:AQ (8.25) BS02 rna ? GO:0000027 ... P0A7K6 21378755
    168776 4v6k:AR (8.25) BS01 rna ? GO:0000027 ... P0A7L3 21378755
    168777 4v6k:AS (8.25) BS01 rna ? GO:0002181 ... P0AG48 21378755
    168778 4v6k:AT (8.25) BS01 rna ? GO:0002181 ... P61175 21378755
    168779 4v6k:AU (8.25) BS01 rna ? GO:0000027 ... P0ADZ0 21378755
    168780 4v6k:AV (8.25) BS01 rna ? GO:0000027 ... P60624 21378755
    168781 4v6k:AW (8.25) BS01 rna ? GO:0000027 ... P68919 21378755
    168782 4v6k:AW (8.25) BS02 rna ? GO:0000027 ... P68919 21378755
    168783 4v6k:AX (8.25) BS01 rna ? GO:0000027 ... P0A7L8 21378755
    168784 4v6k:AX (8.25) BS02 rna ? GO:0000027 ... P0A7L8 21378755
    168785 4v6k:AY (8.25) BS01 rna ? GO:0000027 ... P0A7M2 21378755
    168786 4v6k:AZ (8.25) BS01 rna ? GO:0000027 ... P0A7M6 21378755
    168787 4v6k:Aa (8.25) BS01 rna ? GO:0000027 ... P0AG51 21378755
    168788 4v6k:Ab (8.25) BS01 rna ? GO:0002181 ... P0A7M9 21378755
    168789 4v6k:Ab (8.25) BS02 rna ? GO:0002181 ... P0A7M9 21378755
    168790 4v6k:Ac (8.25) BS01 rna ? GO:0000027 ... P0A7N4 21378755
    168791 4v6k:Ad (8.25) BS01 rna ? GO:0000027 ... P0A7N9 21378755
    168792 4v6k:Ae (8.25) BS01 rna ? GO:0002181 ... P0A7P5 21378755
    168793 4v6k:Af (8.25) BS01 rna ? GO:0002181 ... P0A7Q1 21378755
    168794 4v6k:Ag (8.25) BS01 rna N/A GO:0003735 ... N/A 21378755
    168795 4v6k:BC (8.25) BS01 rna ? GO:0003723 ... P0CE48 21378755
    168796 4v6k:BC (8.25) BS02 rna ? GO:0003723 ... P0CE48 21378755
    168797 4v6k:BC (8.25) BS03 rna ? GO:0003723 ... P0CE48 21378755
    168798 4v6k:BF (8.25) BS01 rna ? GO:0000028 ... P0A7V0 21378755
    168799 4v6k:BG (8.25) BS01 rna ? GO:0000028 ... P0A7V3 21378755
    168800 4v6k:BG (8.25) BS02 rna ? GO:0000028 ... P0A7V3 21378755
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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