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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168201 4v6f:AO (3.1) BS05 MG ? GO:0003735 ... Q5SHQ7 20400952
    168202 4v6f:AP (3.1) BS01 rna ? GO:0000049 ... P60489 20400952
    168203 4v6f:AP (3.1) BS02 rna ? GO:0000049 ... P60489 20400952
    168204 4v6f:AP (3.1) BS03 rna ? GO:0000049 ... P60489 20400952
    168205 4v6f:AP (3.1) BS04 MG ? GO:0000049 ... P60489 20400952
    168206 4v6f:AQ (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 20400952
    168207 4v6f:AQ (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 20400952
    168208 4v6f:AQ (3.1) BS03 MG ? GO:0003735 ... Q5SHQ4 20400952
    168209 4v6f:AQ (3.1) BS04 MG ? GO:0003735 ... Q5SHQ4 20400952
    168210 4v6f:AQ (3.1) BS05 MG ? GO:0003735 ... Q5SHQ4 20400952
    168211 4v6f:AR (3.1) BS01 rna ? GO:0003735 ... P60490 20400952
    168212 4v6f:AR (3.1) BS02 rna ? GO:0003735 ... P60490 20400952
    168213 4v6f:AR (3.1) BS03 MG ? GO:0003735 ... P60490 20400952
    168214 4v6f:AR (3.1) BS04 MG ? GO:0003735 ... P60490 20400952
    168215 4v6f:AS (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 20400952
    168216 4v6f:AS (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 20400952
    168217 4v6f:AT (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 20400952
    168218 4v6f:AT (3.1) BS02 MG ? GO:0000027 ... Q5SHP0 20400952
    168219 4v6f:AT (3.1) BS03 MG ? GO:0000027 ... Q5SHP0 20400952
    168220 4v6f:AT (3.1) BS04 MG ? GO:0000027 ... Q5SHP0 20400952
    168221 4v6f:AT (3.1) BS05 MG ? GO:0000027 ... Q5SHP0 20400952
    168222 4v6f:AU (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 20400952
    168223 4v6f:AU (3.1) BS02 MG ? GO:0003723 ... Q5SHP9 20400952
    168224 4v6f:AU (3.1) BS03 MG ? GO:0003723 ... Q5SHP9 20400952
    168225 4v6f:AV (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 20400952
    168226 4v6f:AV (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 20400952
    168227 4v6f:AW (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 20400952
    168228 4v6f:AX (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 20400952
    168229 4v6f:AX (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 20400952
    168230 4v6f:AZ (3.1) BS01 rna ? GO:0003735 ... P60494 20400952
    168231 4v6f:AZ (3.1) BS02 MG ? GO:0003735 ... P60494 20400952
    168232 4v6f:BE (3.1) BS01 rna ? GO:0003735 ... P80371 20400952
    168233 4v6f:BE (3.1) BS02 MG ? GO:0003735 ... P80371 20400952
    168234 4v6f:BE (3.1) BS03 MG ? GO:0003735 ... P80371 20400952
    168235 4v6f:BF (3.1) BS01 rna ? GO:0003676 ... P80372 20400952
    168236 4v6f:BF (3.1) BS02 rna ? GO:0003676 ... P80372 20400952
    168237 4v6f:BF (3.1) BS03 MG ? GO:0003676 ... P80372 20400952
    168238 4v6f:BG (3.1) BS01 rna ? GO:0003723 ... P80373 20400952
    168239 4v6f:BG (3.1) BS02 rna ? GO:0003723 ... P80373 20400952
    168240 4v6f:BG (3.1) BS03 MG ? GO:0003723 ... P80373 20400952
    168241 4v6f:BG (3.1) BS04 MG ? GO:0003723 ... P80373 20400952
    168242 4v6f:BG (3.1) BS05 MG ? GO:0003723 ... P80373 20400952
    168243 4v6f:BG (3.1) BS06 ZN ? GO:0003723 ... P80373 20400952
    168244 4v6f:BH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20400952
    168245 4v6f:BH (3.1) BS02 MG ? GO:0003723 ... Q5SHQ5 20400952
    168246 4v6f:BH (3.1) BS03 MG ? GO:0003723 ... Q5SHQ5 20400952
    168247 4v6f:BH (3.1) BS04 MG ? GO:0003723 ... Q5SHQ5 20400952
    168248 4v6f:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20400952
    168249 4v6f:BI (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 20400952
    168250 4v6f:BJ (3.1) BS01 rna ? GO:0000028 ... P17291 20400952
    168251 4v6f:BJ (3.1) BS02 rna ? GO:0000028 ... P17291 20400952
    168252 4v6f:BK (3.1) BS01 rna ? GO:0003735 ... P0DOY9 20400952
    168253 4v6f:BK (3.1) BS02 MG ? GO:0003735 ... P0DOY9 20400952
    168254 4v6f:BK (3.1) BS03 MG ? GO:0003735 ... P0DOY9 20400952
    168255 4v6f:BL (3.1) BS01 rna ? GO:0000049 ... P80374 20400952
    168256 4v6f:BL (3.1) BS02 rna ? GO:0000049 ... P80374 20400952
    168257 4v6f:BL (3.1) BS03 MG ? GO:0000049 ... P80374 20400952
    168258 4v6f:BL (3.1) BS04 MG ? GO:0000049 ... P80374 20400952
    168259 4v6f:BM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20400952
    168260 4v6f:BN (3.1) BS01 rna ? GO:0003735 ... P80376 20400952
    168261 4v6f:BN (3.1) BS02 MG ? GO:0003735 ... P80376 20400952
    168262 4v6f:BO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20400952
    168263 4v6f:BO (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 20400952
    168264 4v6f:BP (3.1) BS01 rna ? GO:0000049 ... P80377 20400952
    168265 4v6f:BP (3.1) BS02 rna ? GO:0000049 ... P80377 20400952
    168266 4v6f:BP (3.1) BS03 rna ? GO:0000049 ... P80377 20400952
    168267 4v6f:BP (3.1) BS04 MG ? GO:0000049 ... P80377 20400952
    168268 4v6f:BQ (3.1) BS01 rna ? GO:0003735 ... P0DOY6 20400952
    168269 4v6f:BQ (3.1) BS02 MG ? GO:0003735 ... P0DOY6 20400952
    168270 4v6f:BQ (3.1) BS03 ZN ? GO:0003735 ... P0DOY6 20400952
    168271 4v6f:BR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20400952
    168272 4v6f:BR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20400952
    168273 4v6f:BS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20400952
    168274 4v6f:BS (3.1) BS02 MG ? GO:0003735 ... Q5SJH3 20400952
    168275 4v6f:BS (3.1) BS03 MG ? GO:0003735 ... Q5SJH3 20400952
    168276 4v6f:BS (3.1) BS04 MG ? GO:0003735 ... Q5SJH3 20400952
    168277 4v6f:BS (3.1) BS05 MG ? GO:0003735 ... Q5SJH3 20400952
    168278 4v6f:BS (3.1) BS06 MG ? GO:0003735 ... Q5SJH3 20400952
    168279 4v6f:BT (3.1) BS01 rna ? GO:0003735 ... P0DOY7 20400952
    168280 4v6f:BT (3.1) BS02 MG ? GO:0003735 ... P0DOY7 20400952
    168281 4v6f:BU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20400952
    168282 4v6f:BV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20400952
    168283 4v6f:BV (3.1) BS02 MG ? GO:0000028 ... Q5SHP2 20400952
    168284 4v6f:BW (3.1) BS01 rna ? GO:0003723 ... P80380 20400952
    168285 4v6f:BW (3.1) BS02 MG ? GO:0003723 ... P80380 20400952
    168286 4v6f:BW (3.1) BS03 MG ? GO:0003723 ... P80380 20400952
    168287 4v6f:BW (3.1) BS04 MG ? GO:0003723 ... P80380 20400952
    168288 4v6f:BW (3.1) BS05 MG ? GO:0003723 ... P80380 20400952
    168289 4v6f:CE (3.1) BS01 rna ? GO:0003735 ... P80371 20400952
    168290 4v6f:CE (3.1) BS02 MG ? GO:0003735 ... P80371 20400952
    168291 4v6f:CE (3.1) BS03 MG ? GO:0003735 ... P80371 20400952
    168292 4v6f:CE (3.1) BS04 MG ? GO:0003735 ... P80371 20400952
    168293 4v6f:CE (3.1) BS05 MG ? GO:0003735 ... P80371 20400952
    168294 4v6f:CF (3.1) BS01 rna ? GO:0003676 ... P80372 20400952
    168295 4v6f:CF (3.1) BS02 rna ? GO:0003676 ... P80372 20400952
    168296 4v6f:CF (3.1) BS03 MG ? GO:0003676 ... P80372 20400952
    168297 4v6f:CG (3.1) BS01 rna ? GO:0003723 ... P80373 20400952
    168298 4v6f:CG (3.1) BS02 rna ? GO:0003723 ... P80373 20400952
    168299 4v6f:CG (3.1) BS03 ZN ? GO:0003723 ... P80373 20400952
    168300 4v6f:CG (3.1) BS04 MG ? GO:0003723 ... P80373 20400952
    168301 4v6f:CG (3.1) BS05 MG ? GO:0003723 ... P80373 20400952
    168302 4v6f:CG (3.1) BS06 MG ? GO:0003723 ... P80373 20400952
    168303 4v6f:CG (3.1) BS07 MG ? GO:0003723 ... P80373 20400952
    168304 4v6f:CG (3.1) BS08 MG ? GO:0003723 ... P80373 20400952
    168305 4v6f:CH (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 20400952
    168306 4v6f:CH (3.1) BS02 rna ? GO:0003723 ... Q5SHQ5 20400952
    168307 4v6f:CH (3.1) BS03 MG ? GO:0003723 ... Q5SHQ5 20400952
    168308 4v6f:CH (3.1) BS04 MG ? GO:0003723 ... Q5SHQ5 20400952
    168309 4v6f:CH (3.1) BS05 MG ? GO:0003723 ... Q5SHQ5 20400952
    168310 4v6f:CI (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 20400952
    168311 4v6f:CI (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 20400952
    168312 4v6f:CJ (3.1) BS01 rna ? GO:0000028 ... P17291 20400952
    168313 4v6f:CJ (3.1) BS02 rna ? GO:0000028 ... P17291 20400952
    168314 4v6f:CJ (3.1) BS03 MG ? GO:0000028 ... P17291 20400952
    168315 4v6f:CK (3.1) BS01 rna ? GO:0003735 ... P0DOY9 20400952
    168316 4v6f:CK (3.1) BS02 MG ? GO:0003735 ... P0DOY9 20400952
    168317 4v6f:CK (3.1) BS03 MG ? GO:0003735 ... P0DOY9 20400952
    168318 4v6f:CK (3.1) BS04 MG ? GO:0003735 ... P0DOY9 20400952
    168319 4v6f:CK (3.1) BS05 MG ? GO:0003735 ... P0DOY9 20400952
    168320 4v6f:CL (3.1) BS01 rna ? GO:0000049 ... P80374 20400952
    168321 4v6f:CL (3.1) BS02 rna ? GO:0000049 ... P80374 20400952
    168322 4v6f:CL (3.1) BS03 MG ? GO:0000049 ... P80374 20400952
    168323 4v6f:CM (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 20400952
    168324 4v6f:CM (3.1) BS02 MG ? GO:0000049 ... Q5SHN7 20400952
    168325 4v6f:CM (3.1) BS03 MG ? GO:0000049 ... Q5SHN7 20400952
    168326 4v6f:CN (3.1) BS01 rna ? GO:0003735 ... P80376 20400952
    168327 4v6f:CN (3.1) BS02 MG ? GO:0003735 ... P80376 20400952
    168328 4v6f:CO (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 20400952
    168329 4v6f:CO (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 20400952
    168330 4v6f:CP (3.1) BS01 rna ? GO:0000049 ... P80377 20400952
    168331 4v6f:CP (3.1) BS02 rna ? GO:0000049 ... P80377 20400952
    168332 4v6f:CP (3.1) BS03 rna ? GO:0000049 ... P80377 20400952
    168333 4v6f:CP (3.1) BS04 MG ? GO:0000049 ... P80377 20400952
    168334 4v6f:CP (3.1) BS05 MG ? GO:0000049 ... P80377 20400952
    168335 4v6f:CQ (3.1) BS01 rna ? GO:0003735 ... P0DOY6 20400952
    168336 4v6f:CQ (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 20400952
    168337 4v6f:CQ (3.1) BS03 MG ? GO:0003735 ... P0DOY6 20400952
    168338 4v6f:CQ (3.1) BS04 MG ? GO:0003735 ... P0DOY6 20400952
    168339 4v6f:CR (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 20400952
    168340 4v6f:CR (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 20400952
    168341 4v6f:CR (3.1) BS03 MG ? GO:0003735 ... Q5SJ76 20400952
    168342 4v6f:CS (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 20400952
    168343 4v6f:CS (3.1) BS02 MG ? GO:0003735 ... Q5SJH3 20400952
    168344 4v6f:CS (3.1) BS03 MG ? GO:0003735 ... Q5SJH3 20400952
    168345 4v6f:CS (3.1) BS04 MG ? GO:0003735 ... Q5SJH3 20400952
    168346 4v6f:CT (3.1) BS01 rna ? GO:0003735 ... P0DOY7 20400952
    168347 4v6f:CT (3.1) BS02 MG ? GO:0003735 ... P0DOY7 20400952
    168348 4v6f:CU (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 20400952
    168349 4v6f:CV (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 20400952
    168350 4v6f:CV (3.1) BS02 MG ? GO:0000028 ... Q5SHP2 20400952
    168351 4v6f:CV (3.1) BS03 MG ? GO:0000028 ... Q5SHP2 20400952
    168352 4v6f:CW (3.1) BS01 rna ? GO:0003723 ... P80380 20400952
    168353 4v6f:CW (3.1) BS02 MG ? GO:0003723 ... P80380 20400952
    168354 4v6f:D0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20400952
    168355 4v6f:D0 (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 20400952
    168356 4v6f:D0 (3.1) BS03 MG ? GO:0003735 ... Q9Z9H5 20400952
    168357 4v6f:D0 (3.1) BS04 MG ? GO:0003735 ... Q9Z9H5 20400952
    168358 4v6f:D0 (3.1) BS05 MG ? GO:0003735 ... Q9Z9H5 20400952
    168359 4v6f:D1 (3.1) BS01 rna ? GO:0000027 ... P60491 20400952
    168360 4v6f:D1 (3.1) BS02 MG ? GO:0000027 ... P60491 20400952
    168361 4v6f:D1 (3.1) BS03 MG ? GO:0000027 ... P60491 20400952
    168362 4v6f:D1 (3.1) BS04 MG ? GO:0000027 ... P60491 20400952
    168363 4v6f:D1 (3.1) BS05 MG ? GO:0000027 ... P60491 20400952
    168364 4v6f:D1 (3.1) BS06 MG ? GO:0000027 ... P60491 20400952
    168365 4v6f:D1 (3.1) BS07 MG ? GO:0000027 ... P60491 20400952
    168366 4v6f:D1 (3.1) BS08 MG ? GO:0000027 ... P60491 20400952
    168367 4v6f:D1 (3.1) BS09 MG ? GO:0000027 ... P60491 20400952
    168368 4v6f:D1 (3.1) BS10 MG ? GO:0000027 ... P60491 20400952
    168369 4v6f:D2 (3.1) BS01 rna ? GO:0003723 ... P60492 20400952
    168370 4v6f:D2 (3.1) BS02 MG ? GO:0003723 ... P60492 20400952
    168371 4v6f:D2 (3.1) BS03 MG ? GO:0003723 ... P60492 20400952
    168372 4v6f:D2 (3.1) BS04 MG ? GO:0003723 ... P60492 20400952
    168373 4v6f:D3 (3.1) BS01 rna ? GO:0003735 ... P60493 20400952
    168374 4v6f:D3 (3.1) BS02 rna ? GO:0003735 ... P60493 20400952
    168375 4v6f:D3 (3.1) BS03 rna ? GO:0003735 ... P60493 20400952
    168376 4v6f:D3 (3.1) BS04 MG ? GO:0003735 ... P60493 20400952
    168377 4v6f:D3 (3.1) BS05 MG ? GO:0003735 ... P60493 20400952
    168378 4v6f:D3 (3.1) BS06 MG ? GO:0003735 ... P60493 20400952
    168379 4v6f:D4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 20400952
    168380 4v6f:D4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 20400952
    168381 4v6f:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 20400952
    168382 4v6f:D5 (3.1) BS02 MG ? GO:0003735 ... P80339 20400952
    168383 4v6f:D5 (3.1) BS03 MG ? GO:0003735 ... P80339 20400952
    168384 4v6f:D5 (3.1) BS04 MG ? GO:0003735 ... P80339 20400952
    168385 4v6f:D5 (3.1) BS05 MG ? GO:0003735 ... P80339 20400952
    168386 4v6f:D5 (3.1) BS06 MG ? GO:0003735 ... P80339 20400952
    168387 4v6f:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 20400952
    168388 4v6f:D6 (3.1) BS02 MG ? GO:0000049 ... P35871 20400952
    168389 4v6f:D6 (3.1) BS03 MG ? GO:0000049 ... P35871 20400952
    168390 4v6f:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 20400952
    168391 4v6f:D7 (3.1) BS02 MG ? GO:0003735 ... P80340 20400952
    168392 4v6f:D7 (3.1) BS03 MG ? GO:0003735 ... P80340 20400952
    168393 4v6f:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20400952
    168394 4v6f:D8 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 20400952
    168395 4v6f:D8 (3.1) BS03 MG ? GO:0003735 ... Q5SKU1 20400952
    168396 4v6f:D8 (3.1) BS04 MG ? GO:0003735 ... Q5SKU1 20400952
    168397 4v6f:DD (3.1) BS01 rna ? GO:0002181 ... P60405 20400952
    168398 4v6f:DD (3.1) BS02 MG ? GO:0002181 ... P60405 20400952
    168399 4v6f:DD (3.1) BS03 MG ? GO:0002181 ... P60405 20400952
    168400 4v6f:DD (3.1) BS04 MG ? GO:0002181 ... P60405 20400952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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