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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    168001 4v6d:D0 (3.814) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    168002 4v6d:D1 (3.814) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    168003 4v6d:D2 (3.814) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    168004 4v6d:D3 (3.814) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    168005 4v6d:D4 (3.814) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    168006 4v6d:D4 (3.814) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    168007 4v6d:DC (3.814) BS01 rna ? GO:0000027 ... P60422 19696352
    168008 4v6d:DD (3.814) BS01 rna ? GO:0000027 ... P60438 19696352
    168009 4v6d:DE (3.814) BS01 rna ? GO:0001070 ... P60723 19696352
    168010 4v6d:DF (3.814) BS01 rna ? GO:0000027 ... P62399 19696352
    168011 4v6d:DF (3.814) BS02 rna ? GO:0000027 ... P62399 19696352
    168012 4v6d:DG (3.814) BS01 rna ? GO:0000027 ... P0AG55 19696352
    168013 4v6d:DH (3.814) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    168014 4v6d:DI (3.814) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    168015 4v6d:DJ (3.814) BS01 rna ? GO:0002181 ... P0AA10 19696352
    168016 4v6d:DK (3.814) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    168017 4v6d:DK (3.814) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    168018 4v6d:DL (3.814) BS01 rna ? GO:0002181 ... P02413 19696352
    168019 4v6d:DM (3.814) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    168020 4v6d:DM (3.814) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    168021 4v6d:DN (3.814) BS01 rna ? GO:0000027 ... P0AG44 19696352
    168022 4v6d:DO (3.814) BS01 rna ? GO:0002181 ... P0C018 19696352
    168023 4v6d:DO (3.814) BS02 rna ? GO:0002181 ... P0C018 19696352
    168024 4v6d:DP (3.814) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    168025 4v6d:DP (3.814) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    168026 4v6d:DQ (3.814) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    168027 4v6d:DR (3.814) BS01 rna ? GO:0002181 ... P0AG48 19696352
    168028 4v6d:DS (3.814) BS01 rna ? GO:0002181 ... P61175 19696352
    168029 4v6d:DT (3.814) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    168030 4v6d:DU (3.814) BS01 rna ? GO:0000027 ... P60624 19696352
    168031 4v6d:DV (3.814) BS01 rna ? GO:0000027 ... P68919 19696352
    168032 4v6d:DW (3.814) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    168033 4v6d:DW (3.814) BS02 rna ? GO:0000027 ... P0A7L8 19696352
    168034 4v6d:DX (3.814) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    168035 4v6d:DY (3.814) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    168036 4v6d:DZ (3.814) BS01 rna ? GO:0000027 ... P0AG51 19696352
    168037 4v6d:DZ (3.814) BS02 rna ? GO:0000027 ... P0AG51 19696352
    168038 4v6e:AB (3.712) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    168039 4v6e:AC (3.712) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    168040 4v6e:AD (3.712) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    168041 4v6e:AE (3.712) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    168042 4v6e:AF (3.712) BS01 rna ? GO:0002181 ... P02358 19696352
    168043 4v6e:AG (3.712) BS01 rna ? GO:0000028 ... P02359 19696352
    168044 4v6e:AH (3.712) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    168045 4v6e:AI (3.712) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    168046 4v6e:AJ (3.712) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    168047 4v6e:AK (3.712) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    168048 4v6e:AK (3.712) BS02 rna ? GO:0002181 ... P0A7R9 19696352
    168049 4v6e:AL (3.712) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    168050 4v6e:AM (3.712) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    168051 4v6e:AN (3.712) BS01 rna ? GO:0000028 ... P0AG59 19696352
    168052 4v6e:AO (3.712) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    168053 4v6e:AO (3.712) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    168054 4v6e:AP (3.712) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    168055 4v6e:AQ (3.712) BS01 rna ? GO:0000028 ... P0AG63 19696352
    168056 4v6e:AR (3.712) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    168057 4v6e:AS (3.712) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    168058 4v6e:AT (3.712) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    168059 4v6e:AU (3.712) BS01 rna ? GO:0000028 ... P68679 19696352
    168060 4v6e:B0 (3.712) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    168061 4v6e:B1 (3.712) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    168062 4v6e:B2 (3.712) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    168063 4v6e:B3 (3.712) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    168064 4v6e:B4 (3.712) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    168065 4v6e:B4 (3.712) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    168066 4v6e:BC (3.712) BS01 rna ? GO:0000027 ... P60422 19696352
    168067 4v6e:BD (3.712) BS01 rna ? GO:0000027 ... P60438 19696352
    168068 4v6e:BE (3.712) BS01 rna ? GO:0001070 ... P60723 19696352
    168069 4v6e:BF (3.712) BS01 rna ? GO:0000027 ... P62399 19696352
    168070 4v6e:BF (3.712) BS02 rna ? GO:0000027 ... P62399 19696352
    168071 4v6e:BG (3.712) BS01 rna ? GO:0000027 ... P0AG55 19696352
    168072 4v6e:BH (3.712) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    168073 4v6e:BI (3.712) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    168074 4v6e:BJ (3.712) BS01 rna ? GO:0002181 ... P0AA10 19696352
    168075 4v6e:BK (3.712) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    168076 4v6e:BK (3.712) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    168077 4v6e:BL (3.712) BS01 rna ? GO:0002181 ... P02413 19696352
    168078 4v6e:BM (3.712) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    168079 4v6e:BM (3.712) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    168080 4v6e:BN (3.712) BS01 rna ? GO:0000027 ... P0AG44 19696352
    168081 4v6e:BO (3.712) BS01 rna ? GO:0002181 ... P0C018 19696352
    168082 4v6e:BO (3.712) BS02 rna ? GO:0002181 ... P0C018 19696352
    168083 4v6e:BP (3.712) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    168084 4v6e:BP (3.712) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    168085 4v6e:BQ (3.712) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    168086 4v6e:BR (3.712) BS01 rna ? GO:0002181 ... P0AG48 19696352
    168087 4v6e:BS (3.712) BS01 rna ? GO:0002181 ... P61175 19696352
    168088 4v6e:BT (3.712) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    168089 4v6e:BU (3.712) BS01 rna ? GO:0000027 ... P60624 19696352
    168090 4v6e:BV (3.712) BS01 rna ? GO:0000027 ... P68919 19696352
    168091 4v6e:BV (3.712) BS02 rna ? GO:0000027 ... P68919 19696352
    168092 4v6e:BW (3.712) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    168093 4v6e:BX (3.712) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    168094 4v6e:BY (3.712) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    168095 4v6e:BZ (3.712) BS01 rna ? GO:0000027 ... P0AG51 19696352
    168096 4v6e:BZ (3.712) BS02 rna ? GO:0000027 ... P0AG51 19696352
    168097 4v6e:CB (3.712) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    168098 4v6e:CB (3.712) BS02 rna ? GO:0000028 ... P0A7V0 19696352
    168099 4v6e:CC (3.712) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    168100 4v6e:CD (3.712) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    168101 4v6e:CE (3.712) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    168102 4v6e:CF (3.712) BS01 rna ? GO:0002181 ... P02358 19696352
    168103 4v6e:CG (3.712) BS01 rna ? GO:0000028 ... P02359 19696352
    168104 4v6e:CH (3.712) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    168105 4v6e:CI (3.712) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    168106 4v6e:CJ (3.712) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    168107 4v6e:CK (3.712) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    168108 4v6e:CL (3.712) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    168109 4v6e:CM (3.712) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    168110 4v6e:CN (3.712) BS01 rna ? GO:0000028 ... P0AG59 19696352
    168111 4v6e:CO (3.712) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    168112 4v6e:CO (3.712) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    168113 4v6e:CP (3.712) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    168114 4v6e:CQ (3.712) BS01 rna ? GO:0000028 ... P0AG63 19696352
    168115 4v6e:CR (3.712) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    168116 4v6e:CS (3.712) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    168117 4v6e:CT (3.712) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    168118 4v6e:CU (3.712) BS01 rna ? GO:0000028 ... P68679 19696352
    168119 4v6e:D0 (3.712) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    168120 4v6e:D1 (3.712) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    168121 4v6e:D2 (3.712) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    168122 4v6e:D3 (3.712) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    168123 4v6e:D4 (3.712) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    168124 4v6e:D4 (3.712) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    168125 4v6e:DC (3.712) BS01 rna ? GO:0000027 ... P60422 19696352
    168126 4v6e:DD (3.712) BS01 rna ? GO:0000027 ... P60438 19696352
    168127 4v6e:DE (3.712) BS01 rna ? GO:0001070 ... P60723 19696352
    168128 4v6e:DF (3.712) BS01 rna ? GO:0000027 ... P62399 19696352
    168129 4v6e:DF (3.712) BS02 rna ? GO:0000027 ... P62399 19696352
    168130 4v6e:DG (3.712) BS01 rna ? GO:0000027 ... P0AG55 19696352
    168131 4v6e:DH (3.712) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    168132 4v6e:DI (3.712) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    168133 4v6e:DJ (3.712) BS01 rna ? GO:0002181 ... P0AA10 19696352
    168134 4v6e:DK (3.712) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    168135 4v6e:DK (3.712) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    168136 4v6e:DL (3.712) BS01 rna ? GO:0002181 ... P02413 19696352
    168137 4v6e:DM (3.712) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    168138 4v6e:DM (3.712) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    168139 4v6e:DN (3.712) BS01 rna ? GO:0000027 ... P0AG44 19696352
    168140 4v6e:DO (3.712) BS01 rna ? GO:0002181 ... P0C018 19696352
    168141 4v6e:DO (3.712) BS02 rna ? GO:0002181 ... P0C018 19696352
    168142 4v6e:DP (3.712) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    168143 4v6e:DP (3.712) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    168144 4v6e:DQ (3.712) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    168145 4v6e:DR (3.712) BS01 rna ? GO:0002181 ... P0AG48 19696352
    168146 4v6e:DS (3.712) BS01 rna ? GO:0002181 ... P61175 19696352
    168147 4v6e:DT (3.712) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    168148 4v6e:DU (3.712) BS01 rna ? GO:0000027 ... P60624 19696352
    168149 4v6e:DV (3.712) BS01 rna ? GO:0000027 ... P68919 19696352
    168150 4v6e:DW (3.712) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    168151 4v6e:DW (3.712) BS02 rna ? GO:0000027 ... P0A7L8 19696352
    168152 4v6e:DX (3.712) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    168153 4v6e:DY (3.712) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    168154 4v6e:DZ (3.712) BS01 rna ? GO:0000027 ... P0AG51 19696352
    168155 4v6f:A0 (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 20400952
    168156 4v6f:A0 (3.1) BS02 MG ? GO:0003735 ... Q9Z9H5 20400952
    168157 4v6f:A1 (3.1) BS01 rna ? GO:0000027 ... P60491 20400952
    168158 4v6f:A1 (3.1) BS02 MG ? GO:0000027 ... P60491 20400952
    168159 4v6f:A1 (3.1) BS03 MG ? GO:0000027 ... P60491 20400952
    168160 4v6f:A1 (3.1) BS04 MG ? GO:0000027 ... P60491 20400952
    168161 4v6f:A2 (3.1) BS01 rna ? GO:0003723 ... P60492 20400952
    168162 4v6f:A2 (3.1) BS02 MG ? GO:0003723 ... P60492 20400952
    168163 4v6f:A3 (3.1) BS01 rna ? GO:0003735 ... P60493 20400952
    168164 4v6f:A3 (3.1) BS02 rna ? GO:0003735 ... P60493 20400952
    168165 4v6f:A3 (3.1) BS03 rna ? GO:0003735 ... P60493 20400952
    168166 4v6f:A4 (3.1) BS01 ZN ? GO:0003735 ... Q5SJE1 20400952
    168167 4v6f:A5 (3.1) BS01 rna ? GO:0003735 ... P80339 20400952
    168168 4v6f:A5 (3.1) BS02 MG ? GO:0003735 ... P80339 20400952
    168169 4v6f:A6 (3.1) BS01 rna ? GO:0000049 ... P35871 20400952
    168170 4v6f:A7 (3.1) BS01 rna ? GO:0003735 ... P80340 20400952
    168171 4v6f:A8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 20400952
    168172 4v6f:A8 (3.1) BS02 MG ? GO:0003735 ... Q5SKU1 20400952
    168173 4v6f:AD (3.1) BS01 rna ? GO:0002181 ... P60405 20400952
    168174 4v6f:AD (3.1) BS02 MG ? GO:0002181 ... P60405 20400952
    168175 4v6f:AD (3.1) BS03 MG ? GO:0002181 ... P60405 20400952
    168176 4v6f:AD (3.1) BS04 MG ? GO:0002181 ... P60405 20400952
    168177 4v6f:AD (3.1) BS05 MG ? GO:0002181 ... P60405 20400952
    168178 4v6f:AD (3.1) BS06 MG ? GO:0002181 ... P60405 20400952
    168179 4v6f:AD (3.1) BS07 MG ? GO:0002181 ... P60405 20400952
    168180 4v6f:AE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 20400952
    168181 4v6f:AE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 20400952
    168182 4v6f:AF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 20400952
    168183 4v6f:AF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 20400952
    168184 4v6f:AF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 20400952
    168185 4v6f:AF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 20400952
    168186 4v6f:AF (3.1) BS05 MG ? GO:0003735 ... Q5SHN9 20400952
    168187 4v6f:AG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 20400952
    168188 4v6f:AG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 20400952
    168189 4v6f:AG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 20400952
    168190 4v6f:AG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 20400952
    168191 4v6f:AH (3.1) BS01 rna ? GO:0002181 ... A0A0M9ADP1 20400952
    168192 4v6f:AK (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 20400952
    168193 4v6f:AK (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 20400952
    168194 4v6f:AM (3.1) BS01 rna ? GO:0003729 ... P60488 20400952
    168195 4v6f:AN (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 20400952
    168196 4v6f:AN (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 20400952
    168197 4v6f:AO (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 20400952
    168198 4v6f:AO (3.1) BS02 MG ? GO:0003735 ... Q5SHQ7 20400952
    168199 4v6f:AO (3.1) BS03 MG ? GO:0003735 ... Q5SHQ7 20400952
    168200 4v6f:AO (3.1) BS04 MG ? GO:0003735 ... Q5SHQ7 20400952
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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