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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167801 4v6b:Cp (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167802 4v6b:Cq (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167803 4v6c:AB (3.19) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    167804 4v6c:AC (3.19) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    167805 4v6c:AD (3.19) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    167806 4v6c:AE (3.19) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    167807 4v6c:AF (3.19) BS01 rna ? GO:0002181 ... P02358 19696352
    167808 4v6c:AG (3.19) BS01 rna ? GO:0000028 ... P02359 19696352
    167809 4v6c:AH (3.19) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    167810 4v6c:AI (3.19) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    167811 4v6c:AJ (3.19) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    167812 4v6c:AK (3.19) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    167813 4v6c:AK (3.19) BS02 rna ? GO:0002181 ... P0A7R9 19696352
    167814 4v6c:AL (3.19) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    167815 4v6c:AM (3.19) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    167816 4v6c:AN (3.19) BS01 rna ? GO:0000028 ... P0AG59 19696352
    167817 4v6c:AO (3.19) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    167818 4v6c:AO (3.19) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    167819 4v6c:AP (3.19) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    167820 4v6c:AQ (3.19) BS01 rna ? GO:0000028 ... P0AG63 19696352
    167821 4v6c:AR (3.19) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    167822 4v6c:AS (3.19) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    167823 4v6c:AT (3.19) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    167824 4v6c:AU (3.19) BS01 rna ? GO:0000028 ... P68679 19696352
    167825 4v6c:B0 (3.19) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    167826 4v6c:B1 (3.19) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    167827 4v6c:B2 (3.19) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    167828 4v6c:B3 (3.19) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    167829 4v6c:B4 (3.19) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    167830 4v6c:B4 (3.19) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    167831 4v6c:BC (3.19) BS01 rna ? GO:0000027 ... P60422 19696352
    167832 4v6c:BD (3.19) BS01 rna ? GO:0000027 ... P60438 19696352
    167833 4v6c:BE (3.19) BS01 rna ? GO:0001070 ... P60723 19696352
    167834 4v6c:BF (3.19) BS01 rna ? GO:0000027 ... P62399 19696352
    167835 4v6c:BF (3.19) BS02 rna ? GO:0000027 ... P62399 19696352
    167836 4v6c:BG (3.19) BS01 rna ? GO:0000027 ... P0AG55 19696352
    167837 4v6c:BH (3.19) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    167838 4v6c:BI (3.19) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    167839 4v6c:BJ (3.19) BS01 rna ? GO:0002181 ... P0AA10 19696352
    167840 4v6c:BK (3.19) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    167841 4v6c:BK (3.19) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    167842 4v6c:BL (3.19) BS01 rna ? GO:0002181 ... P02413 19696352
    167843 4v6c:BM (3.19) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    167844 4v6c:BM (3.19) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    167845 4v6c:BN (3.19) BS01 rna ? GO:0000027 ... P0AG44 19696352
    167846 4v6c:BO (3.19) BS01 rna ? GO:0002181 ... P0C018 19696352
    167847 4v6c:BO (3.19) BS02 rna ? GO:0002181 ... P0C018 19696352
    167848 4v6c:BP (3.19) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    167849 4v6c:BP (3.19) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    167850 4v6c:BQ (3.19) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    167851 4v6c:BR (3.19) BS01 rna ? GO:0002181 ... P0AG48 19696352
    167852 4v6c:BS (3.19) BS01 rna ? GO:0002181 ... P61175 19696352
    167853 4v6c:BT (3.19) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    167854 4v6c:BU (3.19) BS01 rna ? GO:0000027 ... P60624 19696352
    167855 4v6c:BV (3.19) BS01 rna ? GO:0000027 ... P68919 19696352
    167856 4v6c:BV (3.19) BS02 rna ? GO:0000027 ... P68919 19696352
    167857 4v6c:BW (3.19) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    167858 4v6c:BX (3.19) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    167859 4v6c:BY (3.19) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    167860 4v6c:BZ (3.19) BS01 rna ? GO:0000027 ... P0AG51 19696352
    167861 4v6c:CB (3.19) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    167862 4v6c:CB (3.19) BS02 rna ? GO:0000028 ... P0A7V0 19696352
    167863 4v6c:CC (3.19) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    167864 4v6c:CD (3.19) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    167865 4v6c:CE (3.19) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    167866 4v6c:CF (3.19) BS01 rna ? GO:0002181 ... P02358 19696352
    167867 4v6c:CG (3.19) BS01 rna ? GO:0000028 ... P02359 19696352
    167868 4v6c:CH (3.19) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    167869 4v6c:CI (3.19) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    167870 4v6c:CJ (3.19) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    167871 4v6c:CK (3.19) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    167872 4v6c:CL (3.19) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    167873 4v6c:CM (3.19) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    167874 4v6c:CN (3.19) BS01 rna ? GO:0000028 ... P0AG59 19696352
    167875 4v6c:CO (3.19) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    167876 4v6c:CO (3.19) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    167877 4v6c:CP (3.19) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    167878 4v6c:CQ (3.19) BS01 rna ? GO:0000028 ... P0AG63 19696352
    167879 4v6c:CR (3.19) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    167880 4v6c:CS (3.19) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    167881 4v6c:CT (3.19) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    167882 4v6c:CU (3.19) BS01 rna ? GO:0000028 ... P68679 19696352
    167883 4v6c:D0 (3.19) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    167884 4v6c:D1 (3.19) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    167885 4v6c:D2 (3.19) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    167886 4v6c:D3 (3.19) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    167887 4v6c:D4 (3.19) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    167888 4v6c:D4 (3.19) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    167889 4v6c:DC (3.19) BS01 rna ? GO:0000027 ... P60422 19696352
    167890 4v6c:DD (3.19) BS01 rna ? GO:0000027 ... P60438 19696352
    167891 4v6c:DE (3.19) BS01 rna ? GO:0001070 ... P60723 19696352
    167892 4v6c:DF (3.19) BS01 rna ? GO:0000027 ... P62399 19696352
    167893 4v6c:DF (3.19) BS02 rna ? GO:0000027 ... P62399 19696352
    167894 4v6c:DG (3.19) BS01 rna ? GO:0000027 ... P0AG55 19696352
    167895 4v6c:DH (3.19) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    167896 4v6c:DI (3.19) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    167897 4v6c:DJ (3.19) BS01 rna ? GO:0002181 ... P0AA10 19696352
    167898 4v6c:DK (3.19) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    167899 4v6c:DK (3.19) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    167900 4v6c:DL (3.19) BS01 rna ? GO:0002181 ... P02413 19696352
    167901 4v6c:DM (3.19) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    167902 4v6c:DM (3.19) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    167903 4v6c:DN (3.19) BS01 rna ? GO:0000027 ... P0AG44 19696352
    167904 4v6c:DO (3.19) BS01 rna ? GO:0002181 ... P0C018 19696352
    167905 4v6c:DO (3.19) BS02 rna ? GO:0002181 ... P0C018 19696352
    167906 4v6c:DP (3.19) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    167907 4v6c:DP (3.19) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    167908 4v6c:DQ (3.19) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    167909 4v6c:DR (3.19) BS01 rna ? GO:0002181 ... P0AG48 19696352
    167910 4v6c:DS (3.19) BS01 rna ? GO:0002181 ... P61175 19696352
    167911 4v6c:DT (3.19) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    167912 4v6c:DU (3.19) BS01 rna ? GO:0000027 ... P60624 19696352
    167913 4v6c:DV (3.19) BS01 rna ? GO:0000027 ... P68919 19696352
    167914 4v6c:DV (3.19) BS02 rna ? GO:0000027 ... P68919 19696352
    167915 4v6c:DW (3.19) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    167916 4v6c:DW (3.19) BS02 rna ? GO:0000027 ... P0A7L8 19696352
    167917 4v6c:DX (3.19) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    167918 4v6c:DY (3.19) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    167919 4v6c:DZ (3.19) BS01 rna ? GO:0000027 ... P0AG51 19696352
    167920 4v6c:DZ (3.19) BS02 rna ? GO:0000027 ... P0AG51 19696352
    167921 4v6d:AB (3.814) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    167922 4v6d:AC (3.814) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    167923 4v6d:AD (3.814) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    167924 4v6d:AE (3.814) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    167925 4v6d:AF (3.814) BS01 rna ? GO:0002181 ... P02358 19696352
    167926 4v6d:AG (3.814) BS01 rna ? GO:0000028 ... P02359 19696352
    167927 4v6d:AH (3.814) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    167928 4v6d:AI (3.814) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    167929 4v6d:AJ (3.814) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    167930 4v6d:AK (3.814) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    167931 4v6d:AK (3.814) BS02 rna ? GO:0002181 ... P0A7R9 19696352
    167932 4v6d:AL (3.814) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    167933 4v6d:AM (3.814) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    167934 4v6d:AN (3.814) BS01 rna ? GO:0000028 ... P0AG59 19696352
    167935 4v6d:AO (3.814) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    167936 4v6d:AO (3.814) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    167937 4v6d:AP (3.814) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    167938 4v6d:AQ (3.814) BS01 rna ? GO:0000028 ... P0AG63 19696352
    167939 4v6d:AR (3.814) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    167940 4v6d:AS (3.814) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    167941 4v6d:AT (3.814) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    167942 4v6d:AU (3.814) BS01 rna ? GO:0000028 ... P68679 19696352
    167943 4v6d:B0 (3.814) BS01 rna ? GO:0000027 ... P0A7N4 19696352
    167944 4v6d:B1 (3.814) BS01 rna ? GO:0000027 ... P0A7N9 19696352
    167945 4v6d:B2 (3.814) BS01 rna ? GO:0002181 ... P0A7P5 19696352
    167946 4v6d:B3 (3.814) BS01 rna ? GO:0002181 ... P0A7Q1 19696352
    167947 4v6d:B4 (3.814) BS01 rna ? GO:0002181 ... P0A7Q6 19696352
    167948 4v6d:B4 (3.814) BS02 ZN ? GO:0002181 ... P0A7Q6 19696352
    167949 4v6d:BC (3.814) BS01 rna ? GO:0000027 ... P60422 19696352
    167950 4v6d:BD (3.814) BS01 rna ? GO:0000027 ... P60438 19696352
    167951 4v6d:BE (3.814) BS01 rna ? GO:0001070 ... P60723 19696352
    167952 4v6d:BF (3.814) BS01 rna ? GO:0000027 ... P62399 19696352
    167953 4v6d:BF (3.814) BS02 rna ? GO:0000027 ... P62399 19696352
    167954 4v6d:BG (3.814) BS01 rna ? GO:0000027 ... P0AG55 19696352
    167955 4v6d:BH (3.814) BS01 rna ? GO:0002181 ... P0A7R1 19696352
    167956 4v6d:BI (3.814) BS01 rna ? GO:0000027 ... P0A7J7 19696352
    167957 4v6d:BJ (3.814) BS01 rna ? GO:0002181 ... P0AA10 19696352
    167958 4v6d:BK (3.814) BS01 rna ? GO:0002181 ... P0ADY3 19696352
    167959 4v6d:BK (3.814) BS02 rna ? GO:0002181 ... P0ADY3 19696352
    167960 4v6d:BL (3.814) BS01 rna ? GO:0002181 ... P02413 19696352
    167961 4v6d:BM (3.814) BS01 rna ? GO:0000027 ... P0ADY7 19696352
    167962 4v6d:BM (3.814) BS02 rna ? GO:0000027 ... P0ADY7 19696352
    167963 4v6d:BN (3.814) BS01 rna ? GO:0000027 ... P0AG44 19696352
    167964 4v6d:BO (3.814) BS01 rna ? GO:0002181 ... P0C018 19696352
    167965 4v6d:BO (3.814) BS02 rna ? GO:0002181 ... P0C018 19696352
    167966 4v6d:BP (3.814) BS01 rna ? GO:0000027 ... P0A7K6 19696352
    167967 4v6d:BP (3.814) BS02 rna ? GO:0000027 ... P0A7K6 19696352
    167968 4v6d:BQ (3.814) BS01 rna ? GO:0000027 ... P0A7L3 19696352
    167969 4v6d:BR (3.814) BS01 rna ? GO:0002181 ... P0AG48 19696352
    167970 4v6d:BS (3.814) BS01 rna ? GO:0002181 ... P61175 19696352
    167971 4v6d:BT (3.814) BS01 rna ? GO:0000027 ... P0ADZ0 19696352
    167972 4v6d:BU (3.814) BS01 rna ? GO:0000027 ... P60624 19696352
    167973 4v6d:BV (3.814) BS01 rna ? GO:0000027 ... P68919 19696352
    167974 4v6d:BW (3.814) BS01 rna ? GO:0000027 ... P0A7L8 19696352
    167975 4v6d:BX (3.814) BS01 rna ? GO:0000027 ... P0A7M2 19696352
    167976 4v6d:BY (3.814) BS01 rna ? GO:0000027 ... P0A7M6 19696352
    167977 4v6d:BZ (3.814) BS01 rna ? GO:0000027 ... P0AG51 19696352
    167978 4v6d:CB (3.814) BS01 rna ? GO:0000028 ... P0A7V0 19696352
    167979 4v6d:CB (3.814) BS02 rna ? GO:0000028 ... P0A7V0 19696352
    167980 4v6d:CC (3.814) BS01 rna ? GO:0000028 ... P0A7V3 19696352
    167981 4v6d:CD (3.814) BS01 rna ? GO:0000028 ... P0A7V8 19696352
    167982 4v6d:CD (3.814) BS02 rna ? GO:0000028 ... P0A7V8 19696352
    167983 4v6d:CE (3.814) BS01 rna ? GO:0000028 ... P0A7W1 19696352
    167984 4v6d:CF (3.814) BS01 rna ? GO:0002181 ... P02358 19696352
    167985 4v6d:CG (3.814) BS01 rna ? GO:0000028 ... P02359 19696352
    167986 4v6d:CH (3.814) BS01 rna ? GO:0000028 ... P0A7W7 19696352
    167987 4v6d:CI (3.814) BS01 rna ? GO:0000049 ... P0A7X3 19696352
    167988 4v6d:CJ (3.814) BS01 rna ? GO:0000049 ... P0A7R5 19696352
    167989 4v6d:CK (3.814) BS01 rna ? GO:0002181 ... P0A7R9 19696352
    167990 4v6d:CL (3.814) BS01 rna ? GO:0000049 ... P0A7S3 19696352
    167991 4v6d:CM (3.814) BS01 rna ? GO:0000049 ... P0A7S9 19696352
    167992 4v6d:CN (3.814) BS01 rna ? GO:0000028 ... P0AG59 19696352
    167993 4v6d:CO (3.814) BS01 rna ? GO:0000028 ... P0ADZ4 19696352
    167994 4v6d:CO (3.814) BS02 rna ? GO:0000028 ... P0ADZ4 19696352
    167995 4v6d:CP (3.814) BS01 rna ? GO:0000028 ... P0A7T3 19696352
    167996 4v6d:CQ (3.814) BS01 rna ? GO:0000028 ... P0AG63 19696352
    167997 4v6d:CR (3.814) BS01 rna ? GO:0002181 ... P0A7T7 19696352
    167998 4v6d:CS (3.814) BS01 rna ? GO:0000028 ... P0A7U3 19696352
    167999 4v6d:CT (3.814) BS01 rna ? GO:0000028 ... P0A7U7 19696352
    168000 4v6d:CU (3.814) BS01 rna ? GO:0000028 ... P68679 19696352
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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