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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167601 4v69:AM (6.7) BS02 rna ? GO:0000049 ... P0A7S9 19122150
    167602 4v69:AN (6.7) BS01 rna ? GO:0000028 ... P0AG59 19122150
    167603 4v69:AO (6.7) BS01 rna ? GO:0003735 ... Q8X9M2 19122150
    167604 4v69:AO (6.7) BS02 rna ? GO:0003735 ... Q8X9M2 19122150
    167605 4v69:AP (6.7) BS01 rna ? GO:0000028 ... P0A7T3 19122150
    167606 4v69:AQ (6.7) BS01 rna ? GO:0000028 ... P0AG63 19122150
    167607 4v69:AR (6.7) BS01 rna ? GO:0003735 ... P0A7T7 19122150
    167608 4v69:AS (6.7) BS01 rna ? GO:0003723 ... P0A7U3 19122150
    167609 4v69:AT (6.7) BS01 rna ? GO:0000028 ... P0A7U7 19122150
    167610 4v69:AU (6.7) BS01 rna ? GO:0003735 ... P68679 19122150
    167611 4v69:B0 (6.7) BS01 rna ? GO:0000027 ... P0A7N4 19122150
    167612 4v69:B1 (6.7) BS01 rna ? GO:0000027 ... P0A7N9 19122150
    167613 4v69:B2 (6.7) BS01 rna ? GO:0002181 ... P0A7P5 19122150
    167614 4v69:B3 (6.7) BS01 rna ? GO:0002181 ... P0A7Q1 19122150
    167615 4v69:B4 (6.7) BS01 rna ? GO:0002181 ... P0A7Q6 19122150
    167616 4v69:B5 (6.7) BS01 rna ? GO:0000027 ... P0A7L0 19122150
    167617 4v69:B5 (6.7) BS02 rna ? GO:0000027 ... P0A7L0 19122150
    167618 4v69:BC (6.7) BS01 rna ? GO:0000027 ... P60422 19122150
    167619 4v69:BC (6.7) BS02 rna ? GO:0000027 ... P60422 19122150
    167620 4v69:BD (6.7) BS01 rna ? GO:0000027 ... P60438 19122150
    167621 4v69:BE (6.7) BS01 rna ? GO:0001070 ... P60723 19122150
    167622 4v69:BF (6.7) BS01 rna ? GO:0000027 ... P62399 19122150
    167623 4v69:BF (6.7) BS02 rna ? GO:0000027 ... P62399 19122150
    167624 4v69:BF (6.7) BS03 rna ? GO:0000027 ... P62399 19122150
    167625 4v69:BG (6.7) BS01 rna ? GO:0000027 ... P0AG55 19122150
    167626 4v69:BH (6.7) BS01 rna ? GO:0002181 ... P0A7R1 19122150
    167627 4v69:BI (6.7) BS01 rna ? GO:0000027 ... P0A7J7 19122150
    167628 4v69:BJ (6.7) BS01 rna ? GO:0002181 ... P0AA10 19122150
    167629 4v69:BK (6.7) BS01 rna ? GO:0002181 ... P0ADY3 19122150
    167630 4v69:BK (6.7) BS02 rna ? GO:0002181 ... P0ADY3 19122150
    167631 4v69:BL (6.7) BS01 rna ? GO:0002181 ... P02413 19122150
    167632 4v69:BM (6.7) BS01 rna ? GO:0000027 ... P0ADY7 19122150
    167633 4v69:BM (6.7) BS02 rna ? GO:0000027 ... P0ADY7 19122150
    167634 4v69:BN (6.7) BS01 rna ? GO:0000027 ... P0AG44 19122150
    167635 4v69:BO (6.7) BS01 rna ? GO:0002181 ... P0C018 19122150
    167636 4v69:BO (6.7) BS02 rna ? GO:0002181 ... P0C018 19122150
    167637 4v69:BP (6.7) BS01 rna ? GO:0000027 ... P0A7K6 19122150
    167638 4v69:BP (6.7) BS02 rna ? GO:0000027 ... P0A7K6 19122150
    167639 4v69:BQ (6.7) BS01 rna ? GO:0000027 ... P0A7L3 19122150
    167640 4v69:BR (6.7) BS01 rna ? GO:0002181 ... P0AG48 19122150
    167641 4v69:BS (6.7) BS01 rna ? GO:0002181 ... P61175 19122150
    167642 4v69:BT (6.7) BS01 rna ? GO:0000027 ... P0ADZ0 19122150
    167643 4v69:BU (6.7) BS01 rna ? GO:0000027 ... P60624 19122150
    167644 4v69:BV (6.7) BS01 rna ? GO:0000027 ... P68919 19122150
    167645 4v69:BV (6.7) BS02 rna ? GO:0000027 ... P68919 19122150
    167646 4v69:BW (6.7) BS01 rna ? GO:0000027 ... P0A7L8 19122150
    167647 4v69:BW (6.7) BS02 rna ? GO:0000027 ... P0A7L8 19122150
    167648 4v69:BX (6.7) BS01 rna ? GO:0000027 ... P0A7M2 19122150
    167649 4v69:BY (6.7) BS01 rna ? GO:0000027 ... P0A7M6 19122150
    167650 4v69:BZ (6.7) BS01 rna ? GO:0000027 ... P0AG51 19122150
    167651 4v69:BZ (6.7) BS02 rna ? GO:0000027 ... P0AG51 19122150
    167652 4v6a:AB (3.1) BS01 rna ? GO:0003735 ... P80371 19696344
    167653 4v6a:AC (3.1) BS01 rna ? GO:0003676 ... P80372 19696344
    167654 4v6a:AD (3.1) BS01 rna ? GO:0003723 ... P80373 19696344
    167655 4v6a:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 19696344
    167656 4v6a:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 19696344
    167657 4v6a:AG (3.1) BS01 rna ? GO:0000028 ... P17291 19696344
    167658 4v6a:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167659 4v6a:AI (3.1) BS01 rna ? GO:0000049 ... P80374 19696344
    167660 4v6a:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 19696344
    167661 4v6a:AK (3.1) BS01 rna ? GO:0003735 ... P80376 19696344
    167662 4v6a:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 19696344
    167663 4v6a:AM (3.1) BS01 rna ? GO:0000049 ... P80377 19696344
    167664 4v6a:AM (3.1) BS02 rna ? GO:0000049 ... P80377 19696344
    167665 4v6a:AM (3.1) BS03 rna ? GO:0000049 ... P80377 19696344
    167666 4v6a:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167667 4v6a:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 19696344
    167668 4v6a:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 19696344
    167669 4v6a:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 19696344
    167670 4v6a:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167671 4v6a:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 19696344
    167672 4v6a:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 19696344
    167673 4v6a:AT (3.1) BS01 rna ? GO:0003723 ... P80380 19696344
    167674 4v6a:AV (3.1) BS01 rna ? GO:0003746 ... Q76G20 19696344
    167675 4v6a:AV (3.1) BS02 rna ? GO:0003746 ... Q76G20 19696344
    167676 4v6a:AV (3.1) BS03 rna ? GO:0003746 ... Q76G20 19696344
    167677 4v6a:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 19696344
    167678 4v6a:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 19696344
    167679 4v6a:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 19696344
    167680 4v6a:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 19696344
    167681 4v6a:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 19696344
    167682 4v6a:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 19696344
    167683 4v6a:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 19696344
    167684 4v6a:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 19696344
    167685 4v6a:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 19696344
    167686 4v6a:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 19696344
    167687 4v6a:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 19696344
    167688 4v6a:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 19696344
    167689 4v6a:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 19696344
    167690 4v6a:BD (3.1) BS01 rna ? GO:0002181 ... P60405 19696344
    167691 4v6a:BD (3.1) BS02 MG ? GO:0002181 ... P60405 19696344
    167692 4v6a:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 19696344
    167693 4v6a:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 19696344
    167694 4v6a:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 19696344
    167695 4v6a:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 19696344
    167696 4v6a:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 19696344
    167697 4v6a:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167698 4v6a:BI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 19696344
    167699 4v6a:BN (3.1) BS01 rna ? GO:0003729 ... P60488 19696344
    167700 4v6a:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 19696344
    167701 4v6a:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 19696344
    167702 4v6a:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 19696344
    167703 4v6a:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 19696344
    167704 4v6a:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 19696344
    167705 4v6a:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 19696344
    167706 4v6a:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 19696344
    167707 4v6a:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 19696344
    167708 4v6a:BT (3.1) BS01 rna ? GO:0003735 ... P60490 19696344
    167709 4v6a:BT (3.1) BS02 rna ? GO:0003735 ... P60490 19696344
    167710 4v6a:BT (3.1) BS03 MG ? GO:0003735 ... P60490 19696344
    167711 4v6a:BU (3.1) BS01 rna ? GO:0000027 ... P60491 19696344
    167712 4v6a:BU (3.1) BS02 MG ? GO:0000027 ... P60491 19696344
    167713 4v6a:BV (3.1) BS01 rna ? GO:0003723 ... P60492 19696344
    167714 4v6a:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 19696344
    167715 4v6a:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 19696344
    167716 4v6a:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 19696344
    167717 4v6a:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 19696344
    167718 4v6a:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 19696344
    167719 4v6a:CB (3.1) BS01 rna ? GO:0003735 ... P80371 19696344
    167720 4v6a:CC (3.1) BS01 rna ? GO:0003676 ... P80372 19696344
    167721 4v6a:CD (3.1) BS01 rna ? GO:0003723 ... P80373 19696344
    167722 4v6a:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 19696344
    167723 4v6a:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 19696344
    167724 4v6a:CG (3.1) BS01 rna ? GO:0000028 ... P17291 19696344
    167725 4v6a:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167726 4v6a:CI (3.1) BS01 rna ? GO:0000049 ... P80374 19696344
    167727 4v6a:CI (3.1) BS02 rna ? GO:0000049 ... P80374 19696344
    167728 4v6a:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 19696344
    167729 4v6a:CK (3.1) BS01 rna ? GO:0003735 ... P80376 19696344
    167730 4v6a:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 19696344
    167731 4v6a:CM (3.1) BS01 rna ? GO:0000049 ... P80377 19696344
    167732 4v6a:CM (3.1) BS02 rna ? GO:0000049 ... P80377 19696344
    167733 4v6a:CM (3.1) BS03 rna ? GO:0000049 ... P80377 19696344
    167734 4v6a:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167735 4v6a:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 19696344
    167736 4v6a:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 19696344
    167737 4v6a:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 19696344
    167738 4v6a:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167739 4v6a:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 19696344
    167740 4v6a:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 19696344
    167741 4v6a:CT (3.1) BS01 rna ? GO:0003723 ... P80380 19696344
    167742 4v6a:CV (3.1) BS01 rna ? GO:0003746 ... Q76G20 19696344
    167743 4v6a:CV (3.1) BS02 rna ? GO:0003746 ... Q76G20 19696344
    167744 4v6a:CV (3.1) BS03 rna ? GO:0003746 ... Q76G20 19696344
    167745 4v6a:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 19696344
    167746 4v6a:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 19696344
    167747 4v6a:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 19696344
    167748 4v6a:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 19696344
    167749 4v6a:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 19696344
    167750 4v6a:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 19696344
    167751 4v6a:D3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 19696344
    167752 4v6a:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 19696344
    167753 4v6a:D5 (3.1) BS02 ZN ? GO:0003735 ... P80339 19696344
    167754 4v6a:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 19696344
    167755 4v6a:D6 (3.1) BS02 MG ? GO:0000049 ... P35871 19696344
    167756 4v6a:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 19696344
    167757 4v6a:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 19696344
    167758 4v6a:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 19696344
    167759 4v6a:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 19696344
    167760 4v6a:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 19696344
    167761 4v6a:DD (3.1) BS01 rna ? GO:0002181 ... P60405 19696344
    167762 4v6a:DD (3.1) BS02 rna ? GO:0002181 ... P60405 19696344
    167763 4v6a:DD (3.1) BS03 MG ? GO:0002181 ... P60405 19696344
    167764 4v6a:DD (3.1) BS04 MG ? GO:0002181 ... P60405 19696344
    167765 4v6a:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 19696344
    167766 4v6a:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 19696344
    167767 4v6a:DF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 19696344
    167768 4v6a:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 19696344
    167769 4v6a:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 19696344
    167770 4v6a:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 19696344
    167771 4v6a:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 19696344
    167772 4v6a:DI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 19696344
    167773 4v6a:DN (3.1) BS01 rna ? GO:0003729 ... P60488 19696344
    167774 4v6a:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 19696344
    167775 4v6a:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 19696344
    167776 4v6a:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 19696344
    167777 4v6a:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 19696344
    167778 4v6a:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 19696344
    167779 4v6a:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 19696344
    167780 4v6a:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 19696344
    167781 4v6a:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 19696344
    167782 4v6a:DT (3.1) BS01 rna ? GO:0003735 ... P60490 19696344
    167783 4v6a:DT (3.1) BS02 rna ? GO:0003735 ... P60490 19696344
    167784 4v6a:DU (3.1) BS01 rna ? GO:0000027 ... P60491 19696344
    167785 4v6a:DV (3.1) BS01 rna ? GO:0003723 ... P60492 19696344
    167786 4v6a:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 19696344
    167787 4v6a:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 19696344
    167788 4v6a:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 19696344
    167789 4v6a:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 19696344
    167790 4v6a:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 19696344
    167791 4v6b:AA (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167792 4v6b:AO (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167793 4v6b:Ax (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167794 4v6b:BH (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167795 4v6b:BI (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167796 4v6b:BW (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167797 4v6b:Bf (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167798 4v6b:Bv (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167799 4v6b:Cj (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    167800 4v6b:Cm (2.85) BS01 CA ? GO:0006826 ... Q6S4P3 19923220
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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