Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167401 4v67:B3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 19064930
    167402 4v67:B3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 19064930
    167403 4v67:B4 (3.0) BS01 MG ? GO:0003735 ... Q5SJE1 19064930
    167404 4v67:B5 (3.0) BS01 rna ? GO:0003735 ... P80339 19064930
    167405 4v67:B6 (3.0) BS01 rna ? GO:0000049 ... P35871 19064930
    167406 4v67:B6 (3.0) BS02 MG ? GO:0000049 ... P35871 19064930
    167407 4v67:B7 (3.0) BS01 rna ? GO:0003735 ... P80340 19064930
    167408 4v67:B8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 19064930
    167409 4v67:B8 (3.0) BS02 MG ? GO:0003735 ... Q5SKU1 19064930
    167410 4v67:BD (3.0) BS01 rna ? GO:0002181 ... P60405 19064930
    167411 4v67:BD (3.0) BS02 rna ? GO:0002181 ... P60405 19064930
    167412 4v67:BD (3.0) BS03 MG ? GO:0002181 ... P60405 19064930
    167413 4v67:BE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 19064930
    167414 4v67:BE (3.0) BS02 MG ? GO:0003735 ... Q5SHN8 19064930
    167415 4v67:BF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 19064930
    167416 4v67:BF (3.0) BS02 MG ? GO:0003735 ... Q5SHN9 19064930
    167417 4v67:BG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 19064930
    167418 4v67:BG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 19064930
    167419 4v67:BG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 19064930
    167420 4v67:BH (3.0) BS01 rna ? GO:0002181 ... P0DOY8 19064930
    167421 4v67:BI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 19064930
    167422 4v67:BK (3.0) BS01 rna ? GO:0003735 ... Q5SLP6 19064930
    167423 4v67:BK (3.0) BS02 MG ? GO:0003735 ... Q5SLP6 19064930
    167424 4v67:BN (3.0) BS01 rna ? GO:0003729 ... P60488 19064930
    167425 4v67:BN (3.0) BS02 MG ? GO:0003729 ... P60488 19064930
    167426 4v67:BO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 19064930
    167427 4v67:BP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 19064930
    167428 4v67:BP (3.0) BS02 MG ? GO:0003735 ... Q5SHQ7 19064930
    167429 4v67:BQ (3.0) BS01 rna ? GO:0000049 ... P60489 19064930
    167430 4v67:BQ (3.0) BS02 rna ? GO:0000049 ... P60489 19064930
    167431 4v67:BQ (3.0) BS03 MG ? GO:0000049 ... P60489 19064930
    167432 4v67:BR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 19064930
    167433 4v67:BR (3.0) BS02 MG ? GO:0003735 ... Q9Z9H5 19064930
    167434 4v67:BR (3.0) BS03 MG ? GO:0003735 ... Q9Z9H5 19064930
    167435 4v67:BS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 19064930
    167436 4v67:BS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 19064930
    167437 4v67:BT (3.0) BS01 rna ? GO:0003735 ... P60490 19064930
    167438 4v67:BT (3.0) BS02 rna ? GO:0003735 ... P60490 19064930
    167439 4v67:BU (3.0) BS01 rna ? GO:0000027 ... P60491 19064930
    167440 4v67:BV (3.0) BS01 rna ? GO:0003723 ... P60492 19064930
    167441 4v67:BW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 19064930
    167442 4v67:BX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 19064930
    167443 4v67:BY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 19064930
    167444 4v67:BY (3.0) BS02 MG ? GO:0003723 ... Q5SHP9 19064930
    167445 4v67:BZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 19064930
    167446 4v67:BZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 19064930
    167447 4v67:CB (3.0) BS01 rna ? GO:0003735 ... P80371 19064930
    167448 4v67:CC (3.0) BS01 rna ? GO:0003676 ... P80372 19064930
    167449 4v67:CD (3.0) BS01 rna ? GO:0003723 ... P80373 19064930
    167450 4v67:CE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 19064930
    167451 4v67:CE (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 19064930
    167452 4v67:CF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 19064930
    167453 4v67:CF (3.0) BS02 MG ? GO:0003735 ... Q5SLP8 19064930
    167454 4v67:CG (3.0) BS01 rna ? GO:0000028 ... P17291 19064930
    167455 4v67:CG (3.0) BS02 rna ? GO:0000028 ... P17291 19064930
    167456 4v67:CH (3.0) BS01 rna ? GO:0003735 ... P0DOY9 19064930
    167457 4v67:CI (3.0) BS01 rna ? GO:0000049 ... P80374 19064930
    167458 4v67:CI (3.0) BS02 rna ? GO:0000049 ... P80374 19064930
    167459 4v67:CJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 19064930
    167460 4v67:CK (3.0) BS01 rna ? GO:0003735 ... P80376 19064930
    167461 4v67:CL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 19064930
    167462 4v67:CL (3.0) BS02 MG ? GO:0000049 ... Q5SHN3 19064930
    167463 4v67:CM (3.0) BS01 rna ? GO:0000049 ... P80377 19064930
    167464 4v67:CM (3.0) BS02 rna ? GO:0000049 ... P80377 19064930
    167465 4v67:CN (3.0) BS01 rna ? GO:0003735 ... P0DOY6 19064930
    167466 4v67:CN (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 19064930
    167467 4v67:CO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 19064930
    167468 4v67:CO (3.0) BS02 rna ? GO:0003735 ... Q5SJ76 19064930
    167469 4v67:CP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 19064930
    167470 4v67:CQ (3.0) BS01 rna ? GO:0003735 ... P0DOY7 19064930
    167471 4v67:CR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 19064930
    167472 4v67:CS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 19064930
    167473 4v67:CT (3.0) BS01 rna ? GO:0003723 ... P80380 19064930
    167474 4v67:CX (3.0) BS01 rna ? GO:0000049 ... Q5SM01 19064930
    167475 4v67:CX (3.0) BS02 rna ? GO:0000049 ... Q5SM01 19064930
    167476 4v67:CX (3.0) BS03 rna ? GO:0000049 ... Q5SM01 19064930
    167477 4v67:D0 (3.0) BS01 rna ? GO:0003735 ... P60493 19064930
    167478 4v67:D0 (3.0) BS02 rna ? GO:0003735 ... P60493 19064930
    167479 4v67:D1 (3.0) BS01 rna ? GO:0003735 ... P60494 19064930
    167480 4v67:D1 (3.0) BS02 MG ? GO:0003735 ... P60494 19064930
    167481 4v67:D2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 19064930
    167482 4v67:D3 (3.0) BS01 rna ? GO:0003735 ... Q5SHQ6 19064930
    167483 4v67:D3 (3.0) BS02 rna ? GO:0003735 ... Q5SHQ6 19064930
    167484 4v67:D5 (3.0) BS01 rna ? GO:0003735 ... P80339 19064930
    167485 4v67:D6 (3.0) BS01 rna ? GO:0000049 ... P35871 19064930
    167486 4v67:D7 (3.0) BS01 rna ? GO:0003735 ... P80340 19064930
    167487 4v67:D8 (3.0) BS01 rna ? GO:0003735 ... Q5SKU1 19064930
    167488 4v67:DD (3.0) BS01 rna ? GO:0002181 ... P60405 19064930
    167489 4v67:DD (3.0) BS02 MG ? GO:0002181 ... P60405 19064930
    167490 4v67:DE (3.0) BS01 rna ? GO:0003735 ... Q5SHN8 19064930
    167491 4v67:DF (3.0) BS01 rna ? GO:0003735 ... Q5SHN9 19064930
    167492 4v67:DG (3.0) BS01 rna ? GO:0000049 ... Q5SHQ0 19064930
    167493 4v67:DG (3.0) BS02 rna ? GO:0000049 ... Q5SHQ0 19064930
    167494 4v67:DG (3.0) BS03 rna ? GO:0000049 ... Q5SHQ0 19064930
    167495 4v67:DH (3.0) BS01 rna ? GO:0002181 ... P0DOY8 19064930
    167496 4v67:DI (3.0) BS01 rna ? GO:0003735 ... Q5SLQ1 19064930
    167497 4v67:DI (3.0) BS02 rna ? GO:0003735 ... Q5SLQ1 19064930
    167498 4v67:DK (3.0) BS01 rna ? GO:0003735 ... Q5SLP6 19064930
    167499 4v67:DN (3.0) BS01 rna ? GO:0003729 ... P60488 19064930
    167500 4v67:DO (3.0) BS01 rna ? GO:0003735 ... Q5SHP8 19064930
    167501 4v67:DO (3.0) BS02 rna ? GO:0003735 ... Q5SHP8 19064930
    167502 4v67:DP (3.0) BS01 rna ? GO:0003735 ... Q5SHQ7 19064930
    167503 4v67:DQ (3.0) BS01 rna ? GO:0000049 ... P60489 19064930
    167504 4v67:DQ (3.0) BS02 rna ? GO:0000049 ... P60489 19064930
    167505 4v67:DR (3.0) BS01 rna ? GO:0003735 ... Q9Z9H5 19064930
    167506 4v67:DS (3.0) BS01 rna ? GO:0003735 ... Q5SHQ4 19064930
    167507 4v67:DS (3.0) BS02 rna ? GO:0003735 ... Q5SHQ4 19064930
    167508 4v67:DT (3.0) BS01 rna ? GO:0003735 ... P60490 19064930
    167509 4v67:DT (3.0) BS02 rna ? GO:0003735 ... P60490 19064930
    167510 4v67:DU (3.0) BS01 rna ? GO:0000027 ... P60491 19064930
    167511 4v67:DV (3.0) BS01 rna ? GO:0003723 ... P60492 19064930
    167512 4v67:DW (3.0) BS01 rna ? GO:0003735 ... Q5SHP3 19064930
    167513 4v67:DX (3.0) BS01 rna ? GO:0000027 ... Q5SHP0 19064930
    167514 4v67:DY (3.0) BS01 rna ? GO:0003723 ... Q5SHP9 19064930
    167515 4v67:DZ (3.0) BS01 rna ? GO:0003723 ... Q5SHZ1 19064930
    167516 4v67:DZ (3.0) BS02 rna ? GO:0003723 ... Q5SHZ1 19064930
    167517 4v68:AB (6.4) BS01 rna ? GO:0003735 ... P80371 19229291
    167518 4v68:AD (6.4) BS01 rna ? GO:0003723 ... P80373 19229291
    167519 4v68:AE (6.4) BS01 rna ? GO:0003723 ... Q5SHQ5 19229291
    167520 4v68:AF (6.4) BS01 rna ? GO:0003735 ... Q5SLP8 19229291
    167521 4v68:AG (6.4) BS01 rna ? GO:0000028 ... P17291 19229291
    167522 4v68:AG (6.4) BS02 rna ? GO:0000028 ... P17291 19229291
    167523 4v68:AH (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    167524 4v68:AI (6.4) BS01 rna ? GO:0000049 ... P62669 19229291
    167525 4v68:AI (6.4) BS02 rna ? GO:0000049 ... P62669 19229291
    167526 4v68:AJ (6.4) BS01 rna ? GO:0000049 ... Q5SHN7 19229291
    167527 4v68:AK (6.4) BS01 rna ? GO:0003735 ... P80376 19229291
    167528 4v68:AL (6.4) BS01 rna ? GO:0000049 ... Q5SHN3 19229291
    167529 4v68:AM (6.4) BS01 rna ? GO:0000049 ... P80377 19229291
    167530 4v68:AM (6.4) BS02 rna ? GO:0000049 ... P80377 19229291
    167531 4v68:AM (6.4) BS03 rna ? GO:0000049 ... P80377 19229291
    167532 4v68:AN (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    167533 4v68:AO (6.4) BS01 rna ? GO:0003735 ... Q5SJ76 19229291
    167534 4v68:AO (6.4) BS02 rna ? GO:0003735 ... Q5SJ76 19229291
    167535 4v68:AP (6.4) BS01 rna ? GO:0003735 ... Q5SJH3 19229291
    167536 4v68:AQ (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    167537 4v68:AR (6.4) BS01 rna ? GO:0003735 ... Q5SLQ0 19229291
    167538 4v68:AS (6.4) BS01 rna ? GO:0003723 ... Q5SHP2 19229291
    167539 4v68:AT (6.4) BS01 rna ? GO:0003723 ... P80380 19229291
    167540 4v68:AZ (6.4) BS01 rna ? GO:0003746 ... P60339 19229291
    167541 4v68:AZ (6.4) BS02 rna ? GO:0003746 ... P60339 19229291
    167542 4v68:AZ (6.4) BS03 PHA ? GO:0003746 ... P60339 19229291
    167543 4v68:AZ (6.4) BS04 GDP ? GO:0003746 ... P60339 19229291
    167544 4v68:AZ (6.4) BS05 MAU ? GO:0003746 ... P60339 19229291
    167545 4v68:B0 (6.4) BS01 rna ? GO:0003735 ... P60493 19229291
    167546 4v68:B0 (6.4) BS02 rna ? GO:0003735 ... P60493 19229291
    167547 4v68:B0 (6.4) BS03 rna ? GO:0003735 ... P60493 19229291
    167548 4v68:B1 (6.4) BS01 rna ? GO:0005840 ... P60494 19229291
    167549 4v68:B2 (6.4) BS01 rna ? GO:0003735 ... Q5SHP6 19229291
    167550 4v68:B3 (6.4) BS01 rna ? GO:0003735 ... Q5SHQ6 19229291
    167551 4v68:B3 (6.4) BS02 rna ? GO:0003735 ... Q5SHQ6 19229291
    167552 4v68:B4 (6.4) BS01 rna ? GO:0003735 ... Q5SJE1 19229291
    167553 4v68:B5 (6.4) BS01 rna ? GO:0003735 ... P80339 19229291
    167554 4v68:B6 (6.4) BS01 rna ? GO:0003735 ... P35871 19229291
    167555 4v68:B7 (6.4) BS01 rna ? GO:0003735 ... P80340 19229291
    167556 4v68:B8 (6.4) BS01 rna ? GO:0003735 ... P80341 19229291
    167557 4v68:B9 (6.4) BS01 rna ? GO:0003735 ... Q72I28 19229291
    167558 4v68:BC (6.4) BS01 rna ? GO:0003723 ... Q5SLP7 19229291
    167559 4v68:BD (6.4) BS01 rna ? GO:0002181 ... P60405 19229291
    167560 4v68:BD (6.4) BS02 rna ? GO:0002181 ... P60405 19229291
    167561 4v68:BE (6.4) BS01 rna ? GO:0003735 ... Q5SHN8 19229291
    167562 4v68:BF (6.4) BS01 rna ? GO:0003735 ... Q5SHN9 19229291
    167563 4v68:BG (6.4) BS01 rna ? GO:0000049 ... Q5SHQ0 19229291
    167564 4v68:BG (6.4) BS02 rna ? GO:0000049 ... Q5SHQ0 19229291
    167565 4v68:BG (6.4) BS03 rna ? GO:0000049 ... Q5SHQ0 19229291
    167566 4v68:BH (6.4) BS01 rna N/A GO:0003735 ... N/A 19229291
    167567 4v68:BI (6.4) BS01 rna ? GO:0003735 ... Q5SLQ1 19229291
    167568 4v68:BL (6.4) BS01 rna ? GO:0003735 ... P36238 19229291
    167569 4v68:BN (6.4) BS01 rna ? GO:0003729 ... P60488 19229291
    167570 4v68:BO (6.4) BS01 rna ? GO:0003735 ... Q5SHP8 19229291
    167571 4v68:BO (6.4) BS02 rna ? GO:0003735 ... Q5SHP8 19229291
    167572 4v68:BP (6.4) BS01 rna ? GO:0003735 ... Q5SHQ7 19229291
    167573 4v68:BQ (6.4) BS01 rna ? GO:0000049 ... P60489 19229291
    167574 4v68:BR (6.4) BS01 rna ? GO:0003735 ... Q9Z9H5 19229291
    167575 4v68:BS (6.4) BS01 rna ? GO:0003735 ... Q5SHQ4 19229291
    167576 4v68:BS (6.4) BS02 rna ? GO:0003735 ... Q5SHQ4 19229291
    167577 4v68:BT (6.4) BS01 rna ? GO:0003735 ... P60490 19229291
    167578 4v68:BT (6.4) BS02 rna ? GO:0003735 ... P60490 19229291
    167579 4v68:BU (6.4) BS01 rna ? GO:0000027 ... P60491 19229291
    167580 4v68:BV (6.4) BS01 rna ? GO:0003723 ... P60492 19229291
    167581 4v68:BW (6.4) BS01 rna ? GO:0003735 ... Q5SHP3 19229291
    167582 4v68:BX (6.4) BS01 rna ? GO:0000027 ... Q5SHP0 19229291
    167583 4v68:BY (6.4) BS01 rna ? GO:0003723 ... Q5SHP9 19229291
    167584 4v68:BZ (6.4) BS01 rna ? GO:0003735 ... Q5SHZ1 19229291
    167585 4v68:BZ (6.4) BS02 rna ? GO:0003735 ... Q5SHZ1 19229291
    167586 4v69:AB (6.7) BS01 rna ? GO:0000028 ... P0A7V0 19122150
    167587 4v69:AD (6.7) BS01 rna ? GO:0000028 ... P0A7V8 19122150
    167588 4v69:AE (6.7) BS01 rna ? GO:0000028 ... P0A7W1 19122150
    167589 4v69:AF (6.7) BS01 rna ? GO:0003735 ... P02358 19122150
    167590 4v69:AG (6.7) BS01 rna ? GO:0003723 ... P02359 19122150
    167591 4v69:AG (6.7) BS02 rna ? GO:0003723 ... P02359 19122150
    167592 4v69:AG (6.7) BS03 rna ? GO:0003723 ... P02359 19122150
    167593 4v69:AH (6.7) BS01 rna ? GO:0000028 ... P0A7W7 19122150
    167594 4v69:AI (6.7) BS01 rna ? GO:0000049 ... P0A7X3 19122150
    167595 4v69:AI (6.7) BS02 rna ? GO:0000049 ... P0A7X3 19122150
    167596 4v69:AJ (6.7) BS01 rna ? GO:0000049 ... P0A7R5 19122150
    167597 4v69:AK (6.7) BS01 rna ? GO:0002181 ... P0A7R9 19122150
    167598 4v69:AL (6.7) BS01 rna ? GO:0000049 ... P0A7S3 19122150
    167599 4v69:AL (6.7) BS02 rna ? GO:0000049 ... P0A7S3 19122150
    167600 4v69:AM (6.7) BS01 rna ? GO:0000049 ... P0A7S9 19122150
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417