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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167201 4v64:DF (3.5) BS02 rna ? GO:0000027 ... P62399 18567815
    167202 4v64:DG (3.5) BS01 rna ? GO:0000027 ... P0AG55 18567815
    167203 4v64:DH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 18567815
    167204 4v64:DI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 18567815
    167205 4v64:DJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 18567815
    167206 4v64:DK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 18567815
    167207 4v64:DL (3.5) BS01 rna ? GO:0002181 ... P02413 18567815
    167208 4v64:DM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 18567815
    167209 4v64:DM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 18567815
    167210 4v64:DN (3.5) BS01 rna ? GO:0000027 ... P0AG44 18567815
    167211 4v64:DO (3.5) BS01 rna ? GO:0002181 ... P0C018 18567815
    167212 4v64:DO (3.5) BS02 rna ? GO:0002181 ... P0C018 18567815
    167213 4v64:DP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 18567815
    167214 4v64:DP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 18567815
    167215 4v64:DQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 18567815
    167216 4v64:DR (3.5) BS01 rna ? GO:0002181 ... P0AG48 18567815
    167217 4v64:DS (3.5) BS01 rna ? GO:0002181 ... P61175 18567815
    167218 4v64:DT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 18567815
    167219 4v64:DU (3.5) BS01 rna ? GO:0000027 ... P60624 18567815
    167220 4v64:DV (3.5) BS01 rna ? GO:0000027 ... P68919 18567815
    167221 4v64:DW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 18567815
    167222 4v64:DW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 18567815
    167223 4v64:DX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 18567815
    167224 4v64:DY (3.5) BS01 rna ? GO:0000027 ... P0AG51 18567815
    167225 4v64:DY (3.5) BS02 rna ? GO:0000027 ... P0AG51 18567815
    167226 4v64:DZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 18567815
    167227 4v65:AB (9.0) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    167228 4v65:AC (9.0) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    167229 4v65:AC (9.0) BS02 rna ? GO:0002181 ... P0A7R9 N/A
    167230 4v65:AD (9.0) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    167231 4v65:AD (9.0) BS02 rna ? GO:0000049 ... P0A7S3 N/A
    167232 4v65:AF (9.0) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    167233 4v65:AG (9.0) BS01 rna ? GO:0000028 ... P0AG59 N/A
    167234 4v65:AH (9.0) BS01 rna ? GO:0003735 ... Q8X9M2 N/A
    167235 4v65:AH (9.0) BS02 rna ? GO:0003735 ... Q8X9M2 N/A
    167236 4v65:AI (9.0) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    167237 4v65:AJ (9.0) BS01 rna ? GO:0000028 ... P0AG63 N/A
    167238 4v65:AK (9.0) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    167239 4v65:AL (9.0) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    167240 4v65:AN (9.0) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    167241 4v65:AO (9.0) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    167242 4v65:AQ (9.0) BS01 rna ? GO:0000028 ... P68679 N/A
    167243 4v65:AQ (9.0) BS02 rna ? GO:0000028 ... P68679 N/A
    167244 4v65:AR (9.0) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    167245 4v65:AS (9.0) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    167246 4v65:AT (9.0) BS01 rna ? GO:0002181 ... P02358 N/A
    167247 4v65:AU (9.0) BS01 rna ? GO:0000028 ... P02359 N/A
    167248 4v65:AU (9.0) BS02 rna ? GO:0000028 ... P02359 N/A
    167249 4v65:AV (9.0) BS01 rna ? GO:0003735 ... Q3YWV3 N/A
    167250 4v65:AW (9.0) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    167251 4v65:AX (9.0) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    167252 4v65:B1 (9.0) BS01 rna ? GO:0001070 ... P60723 N/A
    167253 4v65:B2 (9.0) BS01 rna ? GO:0000027 ... P62399 N/A
    167254 4v65:B2 (9.0) BS02 rna ? GO:0000027 ... P62399 N/A
    167255 4v65:B2 (9.0) BS03 rna ? GO:0000027 ... P62399 N/A
    167256 4v65:B3 (9.0) BS01 rna ? GO:0000027 ... P0AG55 N/A
    167257 4v65:B4 (9.0) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    167258 4v65:B5 (9.0) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    167259 4v65:B6 (9.0) BS01 rna ? GO:0002181 ... P0AA10 N/A
    167260 4v65:BC (9.0) BS01 rna ? GO:0000027 ... P68919 N/A
    167261 4v65:BC (9.0) BS02 rna ? GO:0000027 ... P68919 N/A
    167262 4v65:BD (9.0) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    167263 4v65:BD (9.0) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    167264 4v65:BE (9.0) BS01 rna ? GO:0002181 ... P02413 N/A
    167265 4v65:BF (9.0) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    167266 4v65:BG (9.0) BS01 rna ? GO:0000027 ... P0AG44 N/A
    167267 4v65:BH (9.0) BS01 rna ? GO:0002181 ... P0C018 N/A
    167268 4v65:BH (9.0) BS02 rna ? GO:0002181 ... P0C018 N/A
    167269 4v65:BI (9.0) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    167270 4v65:BI (9.0) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    167271 4v65:BJ (9.0) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    167272 4v65:BK (9.0) BS01 rna ? GO:0002181 ... P0AG48 N/A
    167273 4v65:BL (9.0) BS01 rna ? GO:0002181 ... P61175 N/A
    167274 4v65:BM (9.0) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    167275 4v65:BN (9.0) BS01 rna ? GO:0000027 ... P60422 N/A
    167276 4v65:BO (9.0) BS01 rna ? GO:0000027 ... P60624 N/A
    167277 4v65:BP (9.0) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    167278 4v65:BQ (9.0) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    167279 4v65:BR (9.0) BS01 rna ? GO:0000027 ... P0AG51 N/A
    167280 4v65:BR (9.0) BS02 rna ? GO:0000027 ... P0AG51 N/A
    167281 4v65:BS (9.0) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    167282 4v65:BT (9.0) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    167283 4v65:BU (9.0) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    167284 4v65:BV (9.0) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    167285 4v65:BW (9.0) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    167286 4v65:BX (9.0) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    167287 4v65:BY (9.0) BS01 rna ? GO:0000027 ... P60438 N/A
    167288 4v65:BZ (9.0) BS01 rna ? GO:0000049 ... P35024 N/A
    167289 4v65:BZ (9.0) BS02 rna ? GO:0000049 ... P35024 N/A
    167290 4v66:AB (9.0) BS01 rna ? GO:0000028 ... P0A7V0 N/A
    167291 4v66:AC (9.0) BS01 rna ? GO:0002181 ... P0A7R9 N/A
    167292 4v66:AC (9.0) BS02 rna ? GO:0002181 ... P0A7R9 N/A
    167293 4v66:AD (9.0) BS01 rna ? GO:0000049 ... P0A7S3 N/A
    167294 4v66:AF (9.0) BS01 rna ? GO:0000049 ... P0A7S9 N/A
    167295 4v66:AG (9.0) BS01 rna ? GO:0000028 ... P0AG59 N/A
    167296 4v66:AH (9.0) BS01 rna ? GO:0003735 ... Q8X9M2 N/A
    167297 4v66:AH (9.0) BS02 rna ? GO:0003735 ... Q8X9M2 N/A
    167298 4v66:AI (9.0) BS01 rna ? GO:0000028 ... P0A7T3 N/A
    167299 4v66:AJ (9.0) BS01 rna ? GO:0000028 ... P0AG63 N/A
    167300 4v66:AK (9.0) BS01 rna ? GO:0002181 ... P0A7T7 N/A
    167301 4v66:AL (9.0) BS01 rna ? GO:0000028 ... P0A7U3 N/A
    167302 4v66:AN (9.0) BS01 rna ? GO:0000028 ... P0A7U7 N/A
    167303 4v66:AO (9.0) BS01 rna ? GO:0000028 ... P0A7V3 N/A
    167304 4v66:AO (9.0) BS02 rna ? GO:0000028 ... P0A7V3 N/A
    167305 4v66:AQ (9.0) BS01 rna ? GO:0000028 ... P68679 N/A
    167306 4v66:AQ (9.0) BS02 rna ? GO:0000028 ... P68679 N/A
    167307 4v66:AR (9.0) BS01 rna ? GO:0000028 ... P0A7V8 N/A
    167308 4v66:AS (9.0) BS01 rna ? GO:0000028 ... P0A7W1 N/A
    167309 4v66:AT (9.0) BS01 rna ? GO:0002181 ... P02358 N/A
    167310 4v66:AU (9.0) BS01 rna ? GO:0000028 ... P02359 N/A
    167311 4v66:AU (9.0) BS02 rna ? GO:0000028 ... P02359 N/A
    167312 4v66:AV (9.0) BS01 rna ? GO:0003735 ... Q3YWV3 N/A
    167313 4v66:AW (9.0) BS01 rna ? GO:0000049 ... P0A7X3 N/A
    167314 4v66:AX (9.0) BS01 rna ? GO:0000049 ... P0A7R5 N/A
    167315 4v66:B1 (9.0) BS01 rna ? GO:0001070 ... P60723 N/A
    167316 4v66:B2 (9.0) BS01 rna ? GO:0000027 ... P62399 N/A
    167317 4v66:B2 (9.0) BS02 rna ? GO:0000027 ... P62399 N/A
    167318 4v66:B2 (9.0) BS03 rna ? GO:0000027 ... P62399 N/A
    167319 4v66:B3 (9.0) BS01 rna ? GO:0000027 ... P0AG55 N/A
    167320 4v66:B4 (9.0) BS01 rna ? GO:0002181 ... P0A7R1 N/A
    167321 4v66:B5 (9.0) BS01 rna ? GO:0000027 ... P0A7J7 N/A
    167322 4v66:B6 (9.0) BS01 rna ? GO:0002181 ... P0AA10 N/A
    167323 4v66:BC (9.0) BS01 rna ? GO:0000027 ... P68919 N/A
    167324 4v66:BC (9.0) BS02 rna ? GO:0000027 ... P68919 N/A
    167325 4v66:BD (9.0) BS01 rna ? GO:0002181 ... P0ADY3 N/A
    167326 4v66:BD (9.0) BS02 rna ? GO:0002181 ... P0ADY3 N/A
    167327 4v66:BE (9.0) BS01 rna ? GO:0002181 ... P02413 N/A
    167328 4v66:BF (9.0) BS01 rna ? GO:0000027 ... P0ADY7 N/A
    167329 4v66:BG (9.0) BS01 rna ? GO:0000027 ... P0AG44 N/A
    167330 4v66:BH (9.0) BS01 rna ? GO:0002181 ... P0C018 N/A
    167331 4v66:BH (9.0) BS02 rna ? GO:0002181 ... P0C018 N/A
    167332 4v66:BI (9.0) BS01 rna ? GO:0000027 ... P0A7K6 N/A
    167333 4v66:BI (9.0) BS02 rna ? GO:0000027 ... P0A7K6 N/A
    167334 4v66:BJ (9.0) BS01 rna ? GO:0000027 ... P0A7L3 N/A
    167335 4v66:BK (9.0) BS01 rna ? GO:0002181 ... P0AG48 N/A
    167336 4v66:BL (9.0) BS01 rna ? GO:0002181 ... P61175 N/A
    167337 4v66:BM (9.0) BS01 rna ? GO:0000027 ... P0ADZ0 N/A
    167338 4v66:BN (9.0) BS01 rna ? GO:0000027 ... P60422 N/A
    167339 4v66:BN (9.0) BS02 rna ? GO:0000027 ... P60422 N/A
    167340 4v66:BO (9.0) BS01 rna ? GO:0000027 ... P60624 N/A
    167341 4v66:BP (9.0) BS01 rna ? GO:0000027 ... P0A7L8 N/A
    167342 4v66:BQ (9.0) BS01 rna ? GO:0000027 ... P0A7M6 N/A
    167343 4v66:BR (9.0) BS01 rna ? GO:0000027 ... P0AG51 N/A
    167344 4v66:BR (9.0) BS02 rna ? GO:0000027 ... P0AG51 N/A
    167345 4v66:BS (9.0) BS01 rna ? GO:0002181 ... P0A7M9 N/A
    167346 4v66:BT (9.0) BS01 rna ? GO:0000027 ... P0A7N4 N/A
    167347 4v66:BU (9.0) BS01 rna ? GO:0000027 ... P0A7N9 N/A
    167348 4v66:BV (9.0) BS01 rna ? GO:0002181 ... P0A7P5 N/A
    167349 4v66:BW (9.0) BS01 rna ? GO:0002181 ... P0A7Q1 N/A
    167350 4v66:BX (9.0) BS01 rna ? GO:0002181 ... P0A7Q6 N/A
    167351 4v66:BY (9.0) BS01 rna ? GO:0000027 ... P60438 N/A
    167352 4v66:BZ (9.0) BS01 rna ? GO:0000049 ... P35024 N/A
    167353 4v66:BZ (9.0) BS02 rna ? GO:0000049 ... P35024 N/A
    167354 4v67:AB (3.0) BS01 rna ? GO:0003735 ... P80371 19064930
    167355 4v67:AB (3.0) BS02 MG ? GO:0003735 ... P80371 19064930
    167356 4v67:AB (3.0) BS03 MG ? GO:0003735 ... P80371 19064930
    167357 4v67:AB (3.0) BS04 MG ? GO:0003735 ... P80371 19064930
    167358 4v67:AC (3.0) BS01 rna ? GO:0003676 ... P80372 19064930
    167359 4v67:AC (3.0) BS02 MG ? GO:0003676 ... P80372 19064930
    167360 4v67:AD (3.0) BS01 rna ? GO:0003723 ... P80373 19064930
    167361 4v67:AD (3.0) BS02 MG ? GO:0003723 ... P80373 19064930
    167362 4v67:AE (3.0) BS01 rna ? GO:0003723 ... Q5SHQ5 19064930
    167363 4v67:AE (3.0) BS02 rna ? GO:0003723 ... Q5SHQ5 19064930
    167364 4v67:AE (3.0) BS03 MG ? GO:0003723 ... Q5SHQ5 19064930
    167365 4v67:AF (3.0) BS01 rna ? GO:0003735 ... Q5SLP8 19064930
    167366 4v67:AG (3.0) BS01 rna ? GO:0000028 ... P17291 19064930
    167367 4v67:AG (3.0) BS02 rna ? GO:0000028 ... P17291 19064930
    167368 4v67:AH (3.0) BS01 rna ? GO:0003735 ... P0DOY9 19064930
    167369 4v67:AI (3.0) BS01 rna ? GO:0000049 ... P80374 19064930
    167370 4v67:AI (3.0) BS02 rna ? GO:0000049 ... P80374 19064930
    167371 4v67:AJ (3.0) BS01 rna ? GO:0000049 ... Q5SHN7 19064930
    167372 4v67:AJ (3.0) BS02 MG ? GO:0000049 ... Q5SHN7 19064930
    167373 4v67:AK (3.0) BS01 rna ? GO:0003735 ... P80376 19064930
    167374 4v67:AK (3.0) BS02 MG ? GO:0003735 ... P80376 19064930
    167375 4v67:AK (3.0) BS03 MG ? GO:0003735 ... P80376 19064930
    167376 4v67:AL (3.0) BS01 rna ? GO:0000049 ... Q5SHN3 19064930
    167377 4v67:AM (3.0) BS01 rna ? GO:0000049 ... P80377 19064930
    167378 4v67:AM (3.0) BS02 rna ? GO:0000049 ... P80377 19064930
    167379 4v67:AN (3.0) BS01 rna ? GO:0003735 ... P0DOY6 19064930
    167380 4v67:AN (3.0) BS02 ZN ? GO:0003735 ... P0DOY6 19064930
    167381 4v67:AN (3.0) BS03 MG ? GO:0003735 ... P0DOY6 19064930
    167382 4v67:AO (3.0) BS01 rna ? GO:0003735 ... Q5SJ76 19064930
    167383 4v67:AP (3.0) BS01 rna ? GO:0003735 ... Q5SJH3 19064930
    167384 4v67:AQ (3.0) BS01 rna ? GO:0003735 ... P0DOY7 19064930
    167385 4v67:AR (3.0) BS01 rna ? GO:0003735 ... Q5SLQ0 19064930
    167386 4v67:AS (3.0) BS01 rna ? GO:0000028 ... Q5SHP2 19064930
    167387 4v67:AT (3.0) BS01 rna ? GO:0003723 ... P80380 19064930
    167388 4v67:AT (3.0) BS02 MG ? GO:0003723 ... P80380 19064930
    167389 4v67:AT (3.0) BS03 MG ? GO:0003723 ... P80380 19064930
    167390 4v67:AX (3.0) BS01 rna ? GO:0000049 ... Q5SM01 19064930
    167391 4v67:AX (3.0) BS02 rna ? GO:0000049 ... Q5SM01 19064930
    167392 4v67:AX (3.0) BS03 rna ? GO:0000049 ... Q5SM01 19064930
    167393 4v67:AX (3.0) BS04 rna ? GO:0000049 ... Q5SM01 19064930
    167394 4v67:AX (3.0) BS05 MG ? GO:0000049 ... Q5SM01 19064930
    167395 4v67:AX (3.0) BS06 MG ? GO:0000049 ... Q5SM01 19064930
    167396 4v67:B0 (3.0) BS01 rna ? GO:0003735 ... P60493 19064930
    167397 4v67:B0 (3.0) BS02 rna ? GO:0003735 ... P60493 19064930
    167398 4v67:B1 (3.0) BS01 rna ? GO:0003735 ... P60494 19064930
    167399 4v67:B1 (3.0) BS02 MG ? GO:0003735 ... P60494 19064930
    167400 4v67:B2 (3.0) BS01 rna ? GO:0003735 ... Q5SHP6 19064930
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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