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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    167001 4v63:B7 (3.207) BS01 rna ? GO:0003735 ... P80340 18596689
    167002 4v63:B8 (3.207) BS01 rna ? GO:0003735 ... Q72L77 18596689
    167003 4v63:BD (3.207) BS01 rna ? GO:0002181 ... Q72I07 18596689
    167004 4v63:BD (3.207) BS02 rna ? GO:0002181 ... Q72I07 18596689
    167005 4v63:BE (3.207) BS01 rna ? GO:0003735 ... Q72I04 18596689
    167006 4v63:BF (3.207) BS01 rna ? GO:0003735 ... Q72I05 18596689
    167007 4v63:BF (3.207) BS02 MG ? GO:0003735 ... Q72I05 18596689
    167008 4v63:BG (3.207) BS01 rna ? GO:0000049 ... Q72I16 18596689
    167009 4v63:BG (3.207) BS02 rna ? GO:0000049 ... Q72I16 18596689
    167010 4v63:BG (3.207) BS03 rna ? GO:0000049 ... Q72I16 18596689
    167011 4v63:BG (3.207) BS04 MG ? GO:0000049 ... Q72I16 18596689
    167012 4v63:BG (3.207) BS05 MG ? GO:0000049 ... Q72I16 18596689
    167013 4v63:BH (3.207) BS01 rna ? GO:0002181 ... Q72I19 18596689
    167014 4v63:BI (3.207) BS01 rna ? GO:0003735 ... Q72GV5 18596689
    167015 4v63:BN (3.207) BS01 rna ? GO:0003729 ... Q72IN1 18596689
    167016 4v63:BO (3.207) BS01 rna ? GO:0003735 ... Q72I14 18596689
    167017 4v63:BO (3.207) BS02 rna ? GO:0003735 ... Q72I14 18596689
    167018 4v63:BO (3.207) BS03 MG ? GO:0003735 ... Q72I14 18596689
    167019 4v63:BO (3.207) BS04 MG ? GO:0003735 ... Q72I14 18596689
    167020 4v63:BP (3.207) BS01 rna ? GO:0003735 ... Q72I23 18596689
    167021 4v63:BQ (3.207) BS01 rna ? GO:0000049 ... Q72I11 18596689
    167022 4v63:BQ (3.207) BS02 rna ? GO:0000049 ... Q72I11 18596689
    167023 4v63:BQ (3.207) BS03 MG ? GO:0000049 ... Q72I11 18596689
    167024 4v63:BR (3.207) BS01 rna ? GO:0003735 ... Q72I33 18596689
    167025 4v63:BS (3.207) BS01 rna ? GO:0003735 ... Q72I20 18596689
    167026 4v63:BS (3.207) BS02 rna ? GO:0003735 ... Q72I20 18596689
    167027 4v63:BT (3.207) BS01 rna ? GO:0003735 ... Q72JU9 18596689
    167028 4v63:BT (3.207) BS02 rna ? GO:0003735 ... Q72JU9 18596689
    167029 4v63:BU (3.207) BS01 rna ? GO:0000027 ... Q72L76 18596689
    167030 4v63:BV (3.207) BS01 rna ? GO:0003723 ... Q72HR2 18596689
    167031 4v63:BW (3.207) BS01 rna ? GO:0003735 ... Q72I09 18596689
    167032 4v63:BX (3.207) BS01 rna ? GO:0000027 ... Q72I06 18596689
    167033 4v63:BY (3.207) BS01 rna ? GO:0003723 ... Q72I15 18596689
    167034 4v63:BZ (3.207) BS01 rna ? GO:0003723 ... Q72IA7 18596689
    167035 4v63:BZ (3.207) BS02 rna ? GO:0003723 ... Q72IA7 18596689
    167036 4v63:CB (3.207) BS01 rna ? GO:0003735 ... P62662 18596689
    167037 4v63:CC (3.207) BS01 rna ? GO:0003676 ... P62663 18596689
    167038 4v63:CC (3.207) BS02 MG ? GO:0003676 ... P62663 18596689
    167039 4v63:CD (3.207) BS01 rna ? GO:0003723 ... P62664 18596689
    167040 4v63:CE (3.207) BS01 rna ? GO:0003723 ... P62665 18596689
    167041 4v63:CF (3.207) BS01 rna ? GO:0003735 ... P62666 18596689
    167042 4v63:CF (3.207) BS02 MG ? GO:0003735 ... P62666 18596689
    167043 4v63:CG (3.207) BS01 rna ? GO:0000028 ... P62667 18596689
    167044 4v63:CG (3.207) BS02 rna ? GO:0000028 ... P62667 18596689
    167045 4v63:CG (3.207) BS03 MG ? GO:0000028 ... P62667 18596689
    167046 4v63:CH (3.207) BS01 rna ? GO:0003735 ... P62668 18596689
    167047 4v63:CI (3.207) BS01 rna ? GO:0000049 ... P62669 18596689
    167048 4v63:CI (3.207) BS02 rna ? GO:0000049 ... P62669 18596689
    167049 4v63:CJ (3.207) BS01 rna ? GO:0000049 ... P62653 18596689
    167050 4v63:CK (3.207) BS01 rna ? GO:0003735 ... P62654 18596689
    167051 4v63:CK (3.207) BS02 rna ? GO:0003735 ... P62654 18596689
    167052 4v63:CL (3.207) BS01 rna ? GO:0000049 ... P61941 18596689
    167053 4v63:CM (3.207) BS01 rna ? GO:0000049 ... P62655 18596689
    167054 4v63:CM (3.207) BS02 rna ? GO:0000049 ... P62655 18596689
    167055 4v63:CN (3.207) BS01 rna ? GO:0003735 ... P62656 18596689
    167056 4v63:CN (3.207) BS02 ZN ? GO:0003735 ... P62656 18596689
    167057 4v63:CO (3.207) BS01 rna ? GO:0003735 ... P62657 18596689
    167058 4v63:CO (3.207) BS02 rna ? GO:0003735 ... P62657 18596689
    167059 4v63:CP (3.207) BS01 rna ? GO:0003735 ... P62238 18596689
    167060 4v63:CQ (3.207) BS01 rna ? GO:0003735 ... P62658 18596689
    167061 4v63:CR (3.207) BS01 rna ? GO:0003735 ... P62659 18596689
    167062 4v63:CS (3.207) BS01 rna ? GO:0000028 ... P62660 18596689
    167063 4v63:CT (3.207) BS01 rna ? GO:0003723 ... P62661 18596689
    167064 4v63:CX (3.207) BS01 rna ? GO:0003747 ... Q72HB8 18596689
    167065 4v63:CX (3.207) BS02 rna ? GO:0003747 ... Q72HB8 18596689
    167066 4v63:CX (3.207) BS03 rna ? GO:0003747 ... Q72HB8 18596689
    167067 4v63:CX (3.207) BS04 rna ? GO:0003747 ... Q72HB8 18596689
    167068 4v63:CX (3.207) BS05 MG ? GO:0003747 ... Q72HB8 18596689
    167069 4v63:D0 (3.207) BS01 rna ? GO:0003735 ... Q72HR3 18596689
    167070 4v63:D0 (3.207) BS02 rna ? GO:0003735 ... Q72HR3 18596689
    167071 4v63:D1 (3.207) BS01 rna ? GO:0003735 ... Q72G84 18596689
    167072 4v63:D2 (3.207) BS01 rna ? GO:0003735 ... Q72I12 18596689
    167073 4v63:D2 (3.207) BS02 MG ? GO:0003735 ... Q72I12 18596689
    167074 4v63:D3 (3.207) BS01 rna ? GO:0003735 ... Q72I22 18596689
    167075 4v63:D5 (3.207) BS01 rna ? GO:0003735 ... P62652 18596689
    167076 4v63:D6 (3.207) BS01 rna ? GO:0003735 ... Q72GW3 18596689
    167077 4v63:D7 (3.207) BS01 rna ? GO:0003735 ... P80340 18596689
    167078 4v63:D7 (3.207) BS02 MG ? GO:0003735 ... P80340 18596689
    167079 4v63:D8 (3.207) BS01 rna ? GO:0003735 ... Q72L77 18596689
    167080 4v63:DD (3.207) BS01 rna ? GO:0002181 ... Q72I07 18596689
    167081 4v63:DD (3.207) BS02 MG ? GO:0002181 ... Q72I07 18596689
    167082 4v63:DE (3.207) BS01 rna ? GO:0003735 ... Q72I04 18596689
    167083 4v63:DF (3.207) BS01 rna ? GO:0003735 ... Q72I05 18596689
    167084 4v63:DG (3.207) BS01 rna ? GO:0000049 ... Q72I16 18596689
    167085 4v63:DG (3.207) BS02 rna ? GO:0000049 ... Q72I16 18596689
    167086 4v63:DG (3.207) BS03 rna ? GO:0000049 ... Q72I16 18596689
    167087 4v63:DG (3.207) BS04 MG ? GO:0000049 ... Q72I16 18596689
    167088 4v63:DH (3.207) BS01 rna ? GO:0002181 ... Q72I19 18596689
    167089 4v63:DI (3.207) BS01 rna ? GO:0003735 ... Q72GV5 18596689
    167090 4v63:DI (3.207) BS02 rna ? GO:0003735 ... Q72GV5 18596689
    167091 4v63:DN (3.207) BS01 rna ? GO:0003729 ... Q72IN1 18596689
    167092 4v63:DO (3.207) BS01 rna ? GO:0003735 ... Q72I14 18596689
    167093 4v63:DO (3.207) BS02 rna ? GO:0003735 ... Q72I14 18596689
    167094 4v63:DO (3.207) BS03 MG ? GO:0003735 ... Q72I14 18596689
    167095 4v63:DP (3.207) BS01 rna ? GO:0003735 ... Q72I23 18596689
    167096 4v63:DQ (3.207) BS01 rna ? GO:0000049 ... Q72I11 18596689
    167097 4v63:DQ (3.207) BS02 rna ? GO:0000049 ... Q72I11 18596689
    167098 4v63:DR (3.207) BS01 rna ? GO:0003735 ... Q72I33 18596689
    167099 4v63:DS (3.207) BS01 rna ? GO:0003735 ... Q72I20 18596689
    167100 4v63:DS (3.207) BS02 rna ? GO:0003735 ... Q72I20 18596689
    167101 4v63:DT (3.207) BS01 rna ? GO:0003735 ... Q72JU9 18596689
    167102 4v63:DT (3.207) BS02 rna ? GO:0003735 ... Q72JU9 18596689
    167103 4v63:DU (3.207) BS01 rna ? GO:0000027 ... Q72L76 18596689
    167104 4v63:DV (3.207) BS01 rna ? GO:0003723 ... Q72HR2 18596689
    167105 4v63:DW (3.207) BS01 rna ? GO:0003735 ... Q72I09 18596689
    167106 4v63:DX (3.207) BS01 rna ? GO:0000027 ... Q72I06 18596689
    167107 4v63:DY (3.207) BS01 rna ? GO:0003723 ... Q72I15 18596689
    167108 4v63:DZ (3.207) BS01 rna ? GO:0003723 ... Q72IA7 18596689
    167109 4v63:DZ (3.207) BS02 rna ? GO:0003723 ... Q72IA7 18596689
    167110 4v64:AB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 18567815
    167111 4v64:AC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 18567815
    167112 4v64:AD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 18567815
    167113 4v64:AE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 18567815
    167114 4v64:AF (3.5) BS01 rna ? GO:0002181 ... P02358 18567815
    167115 4v64:AG (3.5) BS01 rna ? GO:0000028 ... P02359 18567815
    167116 4v64:AH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 18567815
    167117 4v64:AI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 18567815
    167118 4v64:AJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 18567815
    167119 4v64:AK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 18567815
    167120 4v64:AL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 18567815
    167121 4v64:AM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 18567815
    167122 4v64:AN (3.5) BS01 rna ? GO:0000028 ... P0AG59 18567815
    167123 4v64:AO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 18567815
    167124 4v64:AO (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 18567815
    167125 4v64:AP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 18567815
    167126 4v64:AQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 18567815
    167127 4v64:AR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 18567815
    167128 4v64:AS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 18567815
    167129 4v64:AT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 18567815
    167130 4v64:AU (3.5) BS01 rna ? GO:0000028 ... P68679 18567815
    167131 4v64:B0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 18567815
    167132 4v64:B1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 18567815
    167133 4v64:B2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 18567815
    167134 4v64:B3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 18567815
    167135 4v64:B4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 18567815
    167136 4v64:B4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 18567815
    167137 4v64:BC (3.5) BS01 rna ? GO:0000027 ... P60422 18567815
    167138 4v64:BD (3.5) BS01 rna ? GO:0000027 ... P60438 18567815
    167139 4v64:BE (3.5) BS01 rna ? GO:0001070 ... P60723 18567815
    167140 4v64:BF (3.5) BS01 rna ? GO:0000027 ... P62399 18567815
    167141 4v64:BF (3.5) BS02 rna ? GO:0000027 ... P62399 18567815
    167142 4v64:BG (3.5) BS01 rna ? GO:0000027 ... P0AG55 18567815
    167143 4v64:BH (3.5) BS01 rna ? GO:0002181 ... P0A7R1 18567815
    167144 4v64:BH (3.5) BS02 rna ? GO:0002181 ... P0A7R1 18567815
    167145 4v64:BI (3.5) BS01 rna ? GO:0000027 ... P0A7J7 18567815
    167146 4v64:BJ (3.5) BS01 rna ? GO:0002181 ... P0AA10 18567815
    167147 4v64:BK (3.5) BS01 rna ? GO:0002181 ... P0ADY3 18567815
    167148 4v64:BL (3.5) BS01 rna ? GO:0002181 ... P02413 18567815
    167149 4v64:BM (3.5) BS01 rna ? GO:0000027 ... P0ADY7 18567815
    167150 4v64:BM (3.5) BS02 rna ? GO:0000027 ... P0ADY7 18567815
    167151 4v64:BN (3.5) BS01 rna ? GO:0000027 ... P0AG44 18567815
    167152 4v64:BO (3.5) BS01 rna ? GO:0002181 ... P0C018 18567815
    167153 4v64:BO (3.5) BS02 rna ? GO:0002181 ... P0C018 18567815
    167154 4v64:BP (3.5) BS01 rna ? GO:0000027 ... P0A7K6 18567815
    167155 4v64:BP (3.5) BS02 rna ? GO:0000027 ... P0A7K6 18567815
    167156 4v64:BQ (3.5) BS01 rna ? GO:0000027 ... P0A7L3 18567815
    167157 4v64:BR (3.5) BS01 rna ? GO:0002181 ... P0AG48 18567815
    167158 4v64:BS (3.5) BS01 rna ? GO:0002181 ... P61175 18567815
    167159 4v64:BT (3.5) BS01 rna ? GO:0000027 ... P0ADZ0 18567815
    167160 4v64:BU (3.5) BS01 rna ? GO:0000027 ... P60624 18567815
    167161 4v64:BV (3.5) BS01 rna ? GO:0000027 ... P68919 18567815
    167162 4v64:BV (3.5) BS02 rna ? GO:0000027 ... P68919 18567815
    167163 4v64:BW (3.5) BS01 rna ? GO:0000027 ... P0A7L8 18567815
    167164 4v64:BW (3.5) BS02 rna ? GO:0000027 ... P0A7L8 18567815
    167165 4v64:BX (3.5) BS01 rna ? GO:0000027 ... P0A7M6 18567815
    167166 4v64:BY (3.5) BS01 rna ? GO:0000027 ... P0AG51 18567815
    167167 4v64:BY (3.5) BS02 rna ? GO:0000027 ... P0AG51 18567815
    167168 4v64:BZ (3.5) BS01 rna ? GO:0000027 ... P0A7M2 18567815
    167169 4v64:CB (3.5) BS01 rna ? GO:0000028 ... P0A7V0 18567815
    167170 4v64:CC (3.5) BS01 rna ? GO:0000028 ... P0A7V3 18567815
    167171 4v64:CD (3.5) BS01 rna ? GO:0000028 ... P0A7V8 18567815
    167172 4v64:CE (3.5) BS01 rna ? GO:0000028 ... P0A7W1 18567815
    167173 4v64:CF (3.5) BS01 rna ? GO:0002181 ... P02358 18567815
    167174 4v64:CG (3.5) BS01 rna ? GO:0000028 ... P02359 18567815
    167175 4v64:CH (3.5) BS01 rna ? GO:0000028 ... P0A7W7 18567815
    167176 4v64:CI (3.5) BS01 rna ? GO:0000049 ... P0A7X3 18567815
    167177 4v64:CJ (3.5) BS01 rna ? GO:0000049 ... P0A7R5 18567815
    167178 4v64:CJ (3.5) BS02 rna ? GO:0000049 ... P0A7R5 18567815
    167179 4v64:CK (3.5) BS01 rna ? GO:0002181 ... P0A7R9 18567815
    167180 4v64:CL (3.5) BS01 rna ? GO:0000049 ... P0A7S3 18567815
    167181 4v64:CM (3.5) BS01 rna ? GO:0000049 ... P0A7S9 18567815
    167182 4v64:CN (3.5) BS01 rna ? GO:0000028 ... P0AG59 18567815
    167183 4v64:CO (3.5) BS01 rna ? GO:0000028 ... P0ADZ4 18567815
    167184 4v64:CO (3.5) BS02 rna ? GO:0000028 ... P0ADZ4 18567815
    167185 4v64:CP (3.5) BS01 rna ? GO:0000028 ... P0A7T3 18567815
    167186 4v64:CQ (3.5) BS01 rna ? GO:0000028 ... P0AG63 18567815
    167187 4v64:CR (3.5) BS01 rna ? GO:0002181 ... P0A7T7 18567815
    167188 4v64:CS (3.5) BS01 rna ? GO:0000028 ... P0A7U3 18567815
    167189 4v64:CT (3.5) BS01 rna ? GO:0000028 ... P0A7U7 18567815
    167190 4v64:CU (3.5) BS01 rna ? GO:0000028 ... P68679 18567815
    167191 4v64:D0 (3.5) BS01 rna ? GO:0000027 ... P0A7N4 18567815
    167192 4v64:D1 (3.5) BS01 rna ? GO:0000027 ... P0A7N9 18567815
    167193 4v64:D2 (3.5) BS01 rna ? GO:0002181 ... P0A7P5 18567815
    167194 4v64:D3 (3.5) BS01 rna ? GO:0002181 ... P0A7Q1 18567815
    167195 4v64:D4 (3.5) BS01 rna ? GO:0002181 ... P0A7Q6 18567815
    167196 4v64:D4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 18567815
    167197 4v64:DC (3.5) BS01 rna ? GO:0000027 ... P60422 18567815
    167198 4v64:DD (3.5) BS01 rna ? GO:0000027 ... P60438 18567815
    167199 4v64:DE (3.5) BS01 rna ? GO:0001070 ... P60723 18567815
    167200 4v64:DF (3.5) BS01 rna ? GO:0000027 ... P62399 18567815
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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