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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166601 4v5y:AG (4.45) BS01 rna ? GO:0000028 ... P02359 17660832
    166602 4v5y:AH (4.45) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    166603 4v5y:AI (4.45) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    166604 4v5y:AJ (4.45) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    166605 4v5y:AK (4.45) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    166606 4v5y:AL (4.45) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    166607 4v5y:AM (4.45) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    166608 4v5y:AN (4.45) BS01 rna ? GO:0000028 ... P0AG59 17660832
    166609 4v5y:AO (4.45) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    166610 4v5y:AO (4.45) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    166611 4v5y:AP (4.45) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    166612 4v5y:AQ (4.45) BS01 rna ? GO:0000028 ... P0AG63 17660832
    166613 4v5y:AR (4.45) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    166614 4v5y:AS (4.45) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    166615 4v5y:AT (4.45) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    166616 4v5y:AU (4.45) BS01 rna ? GO:0000028 ... P68679 17660832
    166617 4v5y:B0 (4.45) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    166618 4v5y:B1 (4.45) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    166619 4v5y:B2 (4.45) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    166620 4v5y:B3 (4.45) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    166621 4v5y:B4 (4.45) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    166622 4v5y:B4 (4.45) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    166623 4v5y:B6 (4.45) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    166624 4v5y:BC (4.45) BS01 rna ? GO:0000027 ... P60422 17660832
    166625 4v5y:BD (4.45) BS01 rna ? GO:0000027 ... P60438 17660832
    166626 4v5y:BE (4.45) BS01 rna ? GO:0001070 ... P60723 17660832
    166627 4v5y:BF (4.45) BS01 rna ? GO:0000027 ... P62399 17660832
    166628 4v5y:BF (4.45) BS02 rna ? GO:0000027 ... P62399 17660832
    166629 4v5y:BG (4.45) BS01 rna ? GO:0000027 ... P0AG55 17660832
    166630 4v5y:BH (4.45) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    166631 4v5y:BH (4.45) BS02 rna ? GO:0002181 ... P0A7R1 17660832
    166632 4v5y:BI (4.45) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    166633 4v5y:BJ (4.45) BS01 rna ? GO:0002181 ... P0AA10 17660832
    166634 4v5y:BK (4.45) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    166635 4v5y:BL (4.45) BS01 rna ? GO:0002181 ... P02413 17660832
    166636 4v5y:BM (4.45) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    166637 4v5y:BM (4.45) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    166638 4v5y:BN (4.45) BS01 rna ? GO:0000027 ... P0AG44 17660832
    166639 4v5y:BO (4.45) BS01 rna ? GO:0002181 ... P0C018 17660832
    166640 4v5y:BO (4.45) BS02 rna ? GO:0002181 ... P0C018 17660832
    166641 4v5y:BP (4.45) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    166642 4v5y:BP (4.45) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    166643 4v5y:BQ (4.45) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    166644 4v5y:BR (4.45) BS01 rna ? GO:0002181 ... P0AG48 17660832
    166645 4v5y:BS (4.45) BS01 rna ? GO:0002181 ... P61175 17660832
    166646 4v5y:BT (4.45) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    166647 4v5y:BU (4.45) BS01 rna ? GO:0000027 ... P60624 17660832
    166648 4v5y:BV (4.45) BS01 rna ? GO:0000027 ... P68919 17660832
    166649 4v5y:BV (4.45) BS02 rna ? GO:0000027 ... P68919 17660832
    166650 4v5y:BW (4.45) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    166651 4v5y:BW (4.45) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    166652 4v5y:BX (4.45) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    166653 4v5y:BY (4.45) BS01 rna ? GO:0000027 ... P0AG51 17660832
    166654 4v5y:BY (4.45) BS02 rna ? GO:0000027 ... P0AG51 17660832
    166655 4v5y:BZ (4.45) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    166656 4v5y:CB (4.45) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    166657 4v5y:CC (4.45) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    166658 4v5y:CD (4.45) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    166659 4v5y:CE (4.45) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    166660 4v5y:CF (4.45) BS01 rna ? GO:0002181 ... P02358 17660832
    166661 4v5y:CG (4.45) BS01 rna ? GO:0000028 ... P02359 17660832
    166662 4v5y:CH (4.45) BS01 rna ? GO:0000028 ... P0A7W7 17660832
    166663 4v5y:CI (4.45) BS01 rna ? GO:0000049 ... P0A7X3 17660832
    166664 4v5y:CJ (4.45) BS01 rna ? GO:0000049 ... P0A7R5 17660832
    166665 4v5y:CK (4.45) BS01 rna ? GO:0002181 ... P0A7R9 17660832
    166666 4v5y:CL (4.45) BS01 rna ? GO:0000049 ... P0A7S3 17660832
    166667 4v5y:CM (4.45) BS01 rna ? GO:0000049 ... P0A7S9 17660832
    166668 4v5y:CN (4.45) BS01 rna ? GO:0000028 ... P0AG59 17660832
    166669 4v5y:CO (4.45) BS01 rna ? GO:0000028 ... P0ADZ4 17660832
    166670 4v5y:CO (4.45) BS02 rna ? GO:0000028 ... P0ADZ4 17660832
    166671 4v5y:CP (4.45) BS01 rna ? GO:0000028 ... P0A7T3 17660832
    166672 4v5y:CQ (4.45) BS01 rna ? GO:0000028 ... P0AG63 17660832
    166673 4v5y:CR (4.45) BS01 rna ? GO:0002181 ... P0A7T7 17660832
    166674 4v5y:CS (4.45) BS01 rna ? GO:0000028 ... P0A7U3 17660832
    166675 4v5y:CT (4.45) BS01 rna ? GO:0000028 ... P0A7U7 17660832
    166676 4v5y:CU (4.45) BS01 rna ? GO:0000028 ... P68679 17660832
    166677 4v5y:D0 (4.45) BS01 rna ? GO:0000027 ... P0A7N4 17660832
    166678 4v5y:D1 (4.45) BS01 rna ? GO:0000027 ... P0A7N9 17660832
    166679 4v5y:D2 (4.45) BS01 rna ? GO:0002181 ... P0A7P5 17660832
    166680 4v5y:D3 (4.45) BS01 rna ? GO:0002181 ... P0A7Q1 17660832
    166681 4v5y:D4 (4.45) BS01 rna ? GO:0002181 ... P0A7Q6 17660832
    166682 4v5y:D4 (4.45) BS02 ZN ? GO:0002181 ... P0A7Q6 17660832
    166683 4v5y:D6 (4.45) BS01 rna ? GO:0005737 ... Q9WX76 17660832
    166684 4v5y:DC (4.45) BS01 rna ? GO:0000027 ... P60422 17660832
    166685 4v5y:DD (4.45) BS01 rna ? GO:0000027 ... P60438 17660832
    166686 4v5y:DE (4.45) BS01 rna ? GO:0001070 ... P60723 17660832
    166687 4v5y:DF (4.45) BS01 rna ? GO:0000027 ... P62399 17660832
    166688 4v5y:DF (4.45) BS02 rna ? GO:0000027 ... P62399 17660832
    166689 4v5y:DG (4.45) BS01 rna ? GO:0000027 ... P0AG55 17660832
    166690 4v5y:DH (4.45) BS01 rna ? GO:0002181 ... P0A7R1 17660832
    166691 4v5y:DI (4.45) BS01 rna ? GO:0000027 ... P0A7J7 17660832
    166692 4v5y:DJ (4.45) BS01 rna ? GO:0002181 ... P0AA10 17660832
    166693 4v5y:DK (4.45) BS01 rna ? GO:0002181 ... P0ADY3 17660832
    166694 4v5y:DL (4.45) BS01 rna ? GO:0002181 ... P02413 17660832
    166695 4v5y:DM (4.45) BS01 rna ? GO:0000027 ... P0ADY7 17660832
    166696 4v5y:DM (4.45) BS02 rna ? GO:0000027 ... P0ADY7 17660832
    166697 4v5y:DN (4.45) BS01 rna ? GO:0000027 ... P0AG44 17660832
    166698 4v5y:DO (4.45) BS01 rna ? GO:0002181 ... P0C018 17660832
    166699 4v5y:DO (4.45) BS02 rna ? GO:0002181 ... P0C018 17660832
    166700 4v5y:DP (4.45) BS01 rna ? GO:0000027 ... P0A7K6 17660832
    166701 4v5y:DP (4.45) BS02 rna ? GO:0000027 ... P0A7K6 17660832
    166702 4v5y:DQ (4.45) BS01 rna ? GO:0000027 ... P0A7L3 17660832
    166703 4v5y:DR (4.45) BS01 rna ? GO:0002181 ... P0AG48 17660832
    166704 4v5y:DS (4.45) BS01 rna ? GO:0002181 ... P61175 17660832
    166705 4v5y:DT (4.45) BS01 rna ? GO:0000027 ... P0ADZ0 17660832
    166706 4v5y:DU (4.45) BS01 rna ? GO:0000027 ... P60624 17660832
    166707 4v5y:DV (4.45) BS01 rna ? GO:0000027 ... P68919 17660832
    166708 4v5y:DW (4.45) BS01 rna ? GO:0000027 ... P0A7L8 17660832
    166709 4v5y:DW (4.45) BS02 rna ? GO:0000027 ... P0A7L8 17660832
    166710 4v5y:DX (4.45) BS01 rna ? GO:0000027 ... P0A7M6 17660832
    166711 4v5y:DY (4.45) BS01 rna ? GO:0000027 ... P0AG51 17660832
    166712 4v5y:DY (4.45) BS02 rna ? GO:0000027 ... P0AG51 17660832
    166713 4v5y:DZ (4.45) BS01 rna ? GO:0000027 ... P0A7M2 17660832
    166714 4v5z:Ac (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166715 4v5z:Ae (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166716 4v5z:Ag (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166717 4v5z:Ah (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166718 4v5z:Ai (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166719 4v5z:Ak (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166720 4v5z:Al (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166721 4v5z:Am (8.7) BS01 rna N/A GO:0003676 ... N/A 18400176
    166722 4v5z:An (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166723 4v5z:An (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166724 4v5z:Ao (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166725 4v5z:Aq (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166726 4v5z:As (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166727 4v5z:As (8.7) BS02 rna N/A GO:0003723 ... N/A 18400176
    166728 4v5z:B2 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166729 4v5z:B3 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166730 4v5z:B3 (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166731 4v5z:B4 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166732 4v5z:B4 (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166733 4v5z:B5 (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166734 4v5z:B6 (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166735 4v5z:B9 (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166736 4v5z:Ba (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166737 4v5z:Bb (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166738 4v5z:Bc (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166739 4v5z:Bd (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166740 4v5z:Bd (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166741 4v5z:Be (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166742 4v5z:Bf (8.7) BS01 rna N/A GO:0042254 ... N/A 18400176
    166743 4v5z:Bh (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166744 4v5z:Bi (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166745 4v5z:Bj (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166746 4v5z:Bk (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166747 4v5z:Bk (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166748 4v5z:Bl (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166749 4v5z:Bl (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166750 4v5z:Bl (8.7) BS03 rna N/A GO:0003735 ... N/A 18400176
    166751 4v5z:Bm (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166752 4v5z:Bn (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166753 4v5z:Bn (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166754 4v5z:Bn (8.7) BS03 rna N/A GO:0003735 ... N/A 18400176
    166755 4v5z:Bo (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166756 4v5z:Bo (8.7) BS02 rna N/A GO:0003735 ... N/A 18400176
    166757 4v5z:Bp (8.7) BS01 rna N/A GO:0003723 ... N/A 18400176
    166758 4v5z:Bp (8.7) BS02 rna N/A GO:0003723 ... N/A 18400176
    166759 4v5z:Bp (8.7) BS03 rna N/A GO:0003723 ... N/A 18400176
    166760 4v5z:Bp (8.7) BS04 peptide N/A GO:0003723 ... N/A 18400176
    166761 4v5z:Bq (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166762 4v5z:Br (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166763 4v5z:Bs (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166764 4v5z:Bv (8.7) BS01 rna N/A GO:0000463 ... N/A 18400176
    166765 4v5z:Bv (8.7) BS02 peptide N/A GO:0000463 ... N/A 18400176
    166766 4v5z:Bx (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166767 4v5z:By (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166768 4v5z:Bz (8.7) BS01 rna N/A GO:0003735 ... N/A 18400176
    166769 4v61:AB (9.4) BS01 rna ? GO:0003735 ... P08242 18042701
    166770 4v61:AC (9.4) BS01 rna ? GO:0003723 ... P09595 18042701
    166771 4v61:AD (9.4) BS01 rna ? GO:0003723 ... P13788 18042701
    166772 4v61:AE (9.4) BS01 rna ? GO:0003723 ... Q9ST69 18042701
    166773 4v61:AF (9.4) BS01 rna ? GO:0003735 ... P82403 18042701
    166774 4v61:AG (9.4) BS01 rna ? GO:0000028 ... P82129 18042701
    166775 4v61:AH (9.4) BS01 rna ? GO:0003735 ... P09597 18042701
    166776 4v61:AI (9.4) BS01 rna ? GO:0000312 ... P82278 18042701
    166777 4v61:AJ (9.4) BS01 rna N/A GO:0003723 ... N/A 18042701
    166778 4v61:AK (9.4) BS01 rna ? GO:0003735 ... P06506 18042701
    166779 4v61:AL (9.4) BS01 rna ? GO:0003735 ... P62128 18042701
    166780 4v61:AM (9.4) BS01 rna ? GO:0003676 ... P82163 18042701
    166781 4v61:AN (9.4) BS01 rna ? GO:0003735 ... P06507 18042701
    166782 4v61:AO (9.4) BS01 rna ? GO:0003735 ... Q9M3I4 18042701
    166783 4v61:AO (9.4) BS02 rna ? GO:0003735 ... Q9M3I4 18042701
    166784 4v61:AP (9.4) BS01 rna ? GO:0003735 ... P28807 18042701
    166785 4v61:AQ (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166786 4v61:AR (9.4) BS01 rna ? GO:0003735 ... Q9M3K7 18042701
    166787 4v61:AS (9.4) BS01 rna ? GO:0000028 ... P06508 18042701
    166788 4v61:AT (9.4) BS01 rna N/A GO:0003723 ... N/A 18042701
    166789 4v61:AU (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166790 4v61:B2 (9.4) BS01 rna ? GO:0003735 ... P28804 18042701
    166791 4v61:B2 (9.4) BS02 rna ? GO:0003735 ... P28804 18042701
    166792 4v61:B3 (9.4) BS01 rna ? GO:0003735 ... P28805 18042701
    166793 4v61:B4 (9.4) BS01 rna ? GO:0003735 ... P82244 18042701
    166794 4v61:B5 (9.4) BS01 rna ? GO:0003735 ... P23326 18042701
    166795 4v61:B6 (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166796 4v61:BD (9.4) BS01 rna ? GO:0003723 ... Q9LE95 18042701
    166797 4v61:BE (9.4) BS01 rna ? GO:0002181 ... P06509 18042701
    166798 4v61:BE (9.4) BS02 rna ? GO:0002181 ... P06509 18042701
    166799 4v61:BF (9.4) BS01 rna N/A GO:0003735 ... N/A 18042701
    166800 4v61:BF (9.4) BS02 rna N/A GO:0003735 ... N/A 18042701
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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