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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    166401 4v5r:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166402 4v5r:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166403 4v5r:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166404 4v5r:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166405 4v5r:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166406 4v5r:DT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166407 4v5r:DT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166408 4v5r:DU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166409 4v5r:DV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166410 4v5r:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166411 4v5r:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166412 4v5r:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166413 4v5r:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166414 4v5r:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166415 4v5s:AB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166416 4v5s:AC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166417 4v5s:AD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166418 4v5s:AD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166419 4v5s:AE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166420 4v5s:AF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166421 4v5s:AG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166422 4v5s:AG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166423 4v5s:AH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166424 4v5s:AI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166425 4v5s:AJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166426 4v5s:AK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166427 4v5s:AL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166428 4v5s:AM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166429 4v5s:AM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166430 4v5s:AN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166431 4v5s:AN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166432 4v5s:AO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166433 4v5s:AO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166434 4v5s:AP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166435 4v5s:AQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166436 4v5s:AR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166437 4v5s:AS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166438 4v5s:AT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166439 4v5s:AZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166440 4v5s:AZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166441 4v5s:AZ (3.1) BS03 GDP ? GO:0003723 ... Q5SHN6 21378964
    166442 4v5s:AZ (3.1) BS04 KIR ? GO:0003723 ... Q5SHN6 21378964
    166443 4v5s:B0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166444 4v5s:B0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166445 4v5s:B0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    166446 4v5s:B1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166447 4v5s:B1 (3.1) BS02 rna ? GO:0003735 ... P60494 21378964
    166448 4v5s:B2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166449 4v5s:B3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166450 4v5s:B3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 21378964
    166451 4v5s:B5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166452 4v5s:B6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166453 4v5s:B7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166454 4v5s:B8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166455 4v5s:B9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166456 4v5s:B9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166457 4v5s:BC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166458 4v5s:BC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166459 4v5s:BD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166460 4v5s:BD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    166461 4v5s:BE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166462 4v5s:BF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166463 4v5s:BG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166464 4v5s:BG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166465 4v5s:BG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166466 4v5s:BH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166467 4v5s:BN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166468 4v5s:BO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166469 4v5s:BO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166470 4v5s:BP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166471 4v5s:BQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166472 4v5s:BQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166473 4v5s:BR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166474 4v5s:BS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166475 4v5s:BS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166476 4v5s:BT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166477 4v5s:BT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166478 4v5s:BU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166479 4v5s:BV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166480 4v5s:BW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166481 4v5s:BX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166482 4v5s:BY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166483 4v5s:BZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166484 4v5s:BZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166485 4v5s:CB (3.1) BS01 rna ? GO:0003735 ... P80371 21378964
    166486 4v5s:CC (3.1) BS01 rna ? GO:0003676 ... P80372 21378964
    166487 4v5s:CD (3.1) BS01 rna ? GO:0003723 ... P80373 21378964
    166488 4v5s:CD (3.1) BS02 ZN ? GO:0003723 ... P80373 21378964
    166489 4v5s:CE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 21378964
    166490 4v5s:CF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 21378964
    166491 4v5s:CG (3.1) BS01 rna ? GO:0000028 ... P17291 21378964
    166492 4v5s:CG (3.1) BS02 rna ? GO:0000028 ... P17291 21378964
    166493 4v5s:CH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166494 4v5s:CI (3.1) BS01 rna ? GO:0000049 ... P80374 21378964
    166495 4v5s:CI (3.1) BS02 rna ? GO:0000049 ... P80374 21378964
    166496 4v5s:CJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 21378964
    166497 4v5s:CK (3.1) BS01 rna ? GO:0003735 ... P80376 21378964
    166498 4v5s:CL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 21378964
    166499 4v5s:CM (3.1) BS01 rna ? GO:0000049 ... P80377 21378964
    166500 4v5s:CM (3.1) BS02 rna ? GO:0000049 ... P80377 21378964
    166501 4v5s:CN (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166502 4v5s:CN (3.1) BS02 ZN N/A GO:0003735 ... N/A 21378964
    166503 4v5s:CO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 21378964
    166504 4v5s:CO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 21378964
    166505 4v5s:CP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 21378964
    166506 4v5s:CQ (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166507 4v5s:CR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 21378964
    166508 4v5s:CS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 21378964
    166509 4v5s:CT (3.1) BS01 rna ? GO:0003723 ... P80380 21378964
    166510 4v5s:CZ (3.1) BS01 rna ? GO:0003723 ... Q5SHN6 21378964
    166511 4v5s:CZ (3.1) BS02 rna ? GO:0003723 ... Q5SHN6 21378964
    166512 4v5s:CZ (3.1) BS03 rna ? GO:0003723 ... Q5SHN6 21378964
    166513 4v5s:CZ (3.1) BS04 GDP ? GO:0003723 ... Q5SHN6 21378964
    166514 4v5s:CZ (3.1) BS05 KIR ? GO:0003723 ... Q5SHN6 21378964
    166515 4v5s:D0 (3.1) BS01 rna ? GO:0003735 ... P60493 21378964
    166516 4v5s:D0 (3.1) BS02 rna ? GO:0003735 ... P60493 21378964
    166517 4v5s:D0 (3.1) BS03 rna ? GO:0003735 ... P60493 21378964
    166518 4v5s:D1 (3.1) BS01 rna ? GO:0003735 ... P60494 21378964
    166519 4v5s:D1 (3.1) BS02 rna ? GO:0003735 ... P60494 21378964
    166520 4v5s:D2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 21378964
    166521 4v5s:D3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 21378964
    166522 4v5s:D5 (3.1) BS01 rna ? GO:0003735 ... P80339 21378964
    166523 4v5s:D6 (3.1) BS01 rna ? GO:0000049 ... P35871 21378964
    166524 4v5s:D7 (3.1) BS01 rna ? GO:0003735 ... P80340 21378964
    166525 4v5s:D8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 21378964
    166526 4v5s:D9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 21378964
    166527 4v5s:D9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 21378964
    166528 4v5s:DC (3.1) BS01 rna ? GO:0000049 ... Q5SLP7 21378964
    166529 4v5s:DC (3.1) BS02 rna ? GO:0000049 ... Q5SLP7 21378964
    166530 4v5s:DD (3.1) BS01 rna ? GO:0002181 ... P60405 21378964
    166531 4v5s:DD (3.1) BS02 rna ? GO:0002181 ... P60405 21378964
    166532 4v5s:DE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 21378964
    166533 4v5s:DF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 21378964
    166534 4v5s:DG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 21378964
    166535 4v5s:DG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 21378964
    166536 4v5s:DG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 21378964
    166537 4v5s:DH (3.1) BS01 rna N/A GO:0003735 ... N/A 21378964
    166538 4v5s:DN (3.1) BS01 rna ? GO:0003729 ... P60488 21378964
    166539 4v5s:DO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 21378964
    166540 4v5s:DO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 21378964
    166541 4v5s:DP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 21378964
    166542 4v5s:DQ (3.1) BS01 rna ? GO:0000049 ... P60489 21378964
    166543 4v5s:DQ (3.1) BS02 rna ? GO:0000049 ... P60489 21378964
    166544 4v5s:DR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 21378964
    166545 4v5s:DS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 21378964
    166546 4v5s:DS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 21378964
    166547 4v5s:DT (3.1) BS01 rna ? GO:0003735 ... P60490 21378964
    166548 4v5s:DT (3.1) BS02 rna ? GO:0003735 ... P60490 21378964
    166549 4v5s:DU (3.1) BS01 rna ? GO:0000027 ... P60491 21378964
    166550 4v5s:DV (3.1) BS01 rna ? GO:0003723 ... P60492 21378964
    166551 4v5s:DW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 21378964
    166552 4v5s:DX (3.1) BS01 rna ? GO:0000027 ... Q5SHP0 21378964
    166553 4v5s:DY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 21378964
    166554 4v5s:DZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 21378964
    166555 4v5s:DZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 21378964
    166556 4v5v:AA (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166557 4v5v:AB (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166558 4v5v:AC (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166559 4v5v:AD (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166560 4v5v:AE (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166561 4v5v:AF (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166562 4v5v:AG (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166563 4v5v:AH (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166564 4v5v:AI (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166565 4v5v:AJ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166566 4v5v:AL (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166567 4v5v:AN (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166568 4v5v:AO (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166569 4v5v:AP (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166570 4v5v:AQ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166571 4v5v:AR (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166572 4v5v:AS (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166573 4v5v:AT (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166574 4v5v:AU (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166575 4v5v:AV (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166576 4v5v:BA (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166577 4v5v:BB (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166578 4v5v:BC (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166579 4v5v:BD (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166580 4v5v:BE (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166581 4v5v:BF (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166582 4v5v:BG (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166583 4v5v:BH (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166584 4v5v:BI (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166585 4v5v:BJ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166586 4v5v:BK (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166587 4v5v:BL (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166588 4v5v:BM (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166589 4v5v:BN (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166590 4v5v:BO (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166591 4v5v:BP (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166592 4v5v:BQ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166593 4v5v:BW (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166594 4v5v:BY (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166595 4v5v:BZ (3.6) BS01 rna ? GO:0003723 ... Q4KRW9 22102022
    166596 4v5y:AB (4.45) BS01 rna ? GO:0000028 ... P0A7V0 17660832
    166597 4v5y:AC (4.45) BS01 rna ? GO:0000028 ... P0A7V3 17660832
    166598 4v5y:AD (4.45) BS01 rna ? GO:0000028 ... P0A7V8 17660832
    166599 4v5y:AE (4.45) BS01 rna ? GO:0000028 ... P0A7W1 17660832
    166600 4v5y:AF (4.45) BS01 rna ? GO:0002181 ... P02358 17660832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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